Wall clock time and date at job start Mon Mar 30 2020 01:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46929 * 2 1 4 4 C 1.46506 * 119.99843 * 269.99741 * 3 2 1 5 5 C 1.50704 * 109.47117 * 270.00636 * 4 3 2 6 6 H 1.07998 * 119.99746 * 359.97438 * 5 4 3 7 7 C 1.37869 * 120.00085 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00187 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00363 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46671 * 59.99857 * 9 7 5 11 11 H 1.48497 * 109.47241 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47197 * 300.00351 * 9 7 5 13 13 C 1.34768 * 120.00379 * 90.00176 * 3 2 1 14 14 O 1.21285 * 120.00294 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99883 * 359.97438 * 13 3 2 16 16 O 1.42903 * 109.47122 * 180.02562 * 15 13 3 17 17 C 1.42893 * 113.99793 * 180.02562 * 16 15 13 18 18 C 1.50707 * 109.47070 * 179.97438 * 17 16 15 19 19 C 1.38238 * 119.99792 * 89.99993 * 18 17 16 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 17 21 21 C 1.38234 * 120.00220 * 359.97124 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00179 * 269.97930 * 18 17 16 24 24 H 1.09008 * 109.47073 * 300.00380 * 1 2 3 25 25 H 1.08995 * 109.47087 * 60.00085 * 1 2 3 26 26 H 1.08996 * 109.47027 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46926 * 239.99898 * 2 1 3 28 28 H 1.09007 * 109.46881 * 119.99527 * 2 1 3 29 29 H 1.08997 * 109.46902 * 29.99926 * 4 3 2 30 30 H 1.08990 * 109.47369 * 150.00151 * 4 3 2 31 31 H 0.96997 * 120.00729 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.47119 * 60.00082 * 15 13 3 33 33 H 1.08993 * 109.47044 * 300.00277 * 15 13 3 34 34 H 1.09005 * 109.47744 * 60.00256 * 17 16 15 35 35 H 1.09000 * 109.47353 * 299.99456 * 17 16 15 36 36 H 1.08005 * 120.00068 * 359.97438 * 19 18 17 37 37 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 39 39 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 40 40 H 1.07999 * 119.99968 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7039 6 1 4.3428 1.2308 -1.0958 7 6 4.1491 2.3894 -2.8780 8 7 3.3489 3.1247 -3.6187 9 14 5.9135 2.0964 -3.4170 10 1 6.1416 0.6397 -3.5937 11 1 6.1606 2.7953 -4.7037 12 1 6.8407 2.6207 -2.3823 13 6 2.2430 2.0166 1.1671 14 8 2.6476 3.1600 1.1671 15 6 1.9913 1.3064 2.4723 16 8 2.3004 2.1821 3.5584 17 6 2.0956 1.6027 4.8484 18 6 2.4513 2.6085 5.9130 19 6 1.4857 3.4688 6.4013 20 6 1.8119 4.3909 7.3782 21 6 3.1034 4.4523 7.8671 22 6 4.0702 3.5956 7.3750 23 6 3.7430 2.6704 6.4015 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.5817 1.6876 -2.0284 30 1 2.0955 3.1410 -1.1386 31 1 3.6748 3.5152 -4.4446 32 1 2.6212 0.4187 2.5302 33 1 0.9433 1.0126 2.5298 34 1 2.7283 0.7216 4.9557 35 1 1.0499 1.3144 4.9555 36 1 0.4765 3.4205 6.0196 37 1 1.0576 5.0633 7.7593 38 1 3.3580 5.1725 8.6306 39 1 5.0803 3.6465 7.7539 40 1 4.4972 1.9977 6.0205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264075305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:32 Heat of formation + Delta-G solvation = -55.849238 kcal Electronic energy + Delta-G solvation = -20829.282941 eV Core-core repulsion = 17609.242795 eV Total energy + Delta-G solvation = -3220.040146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.54899 -39.02548 -37.15132 -35.21393 -32.81355 -32.08013 -31.00127 -30.11558 -28.65479 -26.59586 -25.45197 -23.03083 -22.68641 -22.42309 -21.42915 -18.51583 -17.20629 -16.67352 -16.47101 -16.18175 -16.07775 -15.25915 -15.13896 -14.91490 -14.28770 -13.96209 -13.59470 -13.48671 -13.33797 -12.88188 -12.79351 -12.51326 -12.07301 -11.98914 -11.78692 -11.50983 -11.20011 -11.13132 -11.01303 -10.91510 -10.75016 -10.51146 -10.11251 -9.65357 -9.59196 -9.01014 -8.99949 -8.76808 -8.40997 -7.66156 -6.02033 -4.06833 1.15948 1.31204 3.29255 3.33717 3.38163 3.39932 3.44934 3.80369 4.33400 4.48127 4.70011 4.77652 4.90090 4.99250 5.13184 5.13287 5.16806 5.26677 5.32530 5.35157 5.43166 5.45190 5.54347 5.62683 5.76585 5.85645 5.93521 6.00019 6.21567 6.33271 6.38944 6.46241 6.50169 6.87530 6.97671 7.21862 7.46729 7.56854 7.94552 8.25523 8.41499 8.92428 9.11900 9.58155 11.06076 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019904 B = 0.003670 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.440905 B = 7628.404280 C = 8461.258655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.597 5.597 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.519 6.519 15 C 0.044 3.956 16 O -0.354 6.354 17 C 0.099 3.901 18 C -0.086 4.086 19 C -0.097 4.097 20 C -0.125 4.125 21 C -0.117 4.117 22 C -0.125 4.125 23 C -0.097 4.097 24 H 0.050 0.950 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.321 -6.180 19.796 21.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.331 5.331 4 C 0.130 3.870 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.036 4.036 16 O -0.273 6.273 17 C 0.022 3.978 18 C -0.086 4.086 19 C -0.115 4.115 20 C -0.143 4.143 21 C -0.135 4.135 22 C -0.143 4.143 23 C -0.115 4.115 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.042 -5.255 19.571 20.882 hybrid contribution 0.862 -0.491 -0.399 1.069 sum -4.180 -5.747 19.172 20.447 Atomic orbital electron populations 1.22239 0.96761 1.01437 1.02418 1.21441 0.93550 0.84220 1.02726 1.48217 1.64283 1.13280 1.07358 1.19272 0.96282 0.93687 0.77807 1.21410 0.96956 1.32042 1.06241 0.92499 1.24932 0.97865 0.94900 0.96382 1.69921 1.35734 1.33409 1.14353 0.86554 0.84819 0.78209 0.77817 1.20263 1.21167 1.20152 1.19904 0.79385 0.87160 0.84493 1.90705 1.44202 1.17735 1.86808 1.22413 1.00512 0.93359 0.87333 1.88133 1.88285 1.38689 1.12146 1.21350 0.99933 0.94035 0.82434 1.19598 0.94210 0.98100 0.96719 1.21083 0.99450 0.94691 0.96303 1.21136 0.96766 0.98821 0.97599 1.21182 0.93441 0.98918 0.99967 1.21145 0.99435 0.96109 0.97577 1.21100 0.95549 0.98567 0.96250 0.93135 0.91880 0.92105 0.89715 0.91927 0.94855 0.93859 0.92659 0.90919 0.90997 0.92411 0.92447 0.85894 0.85965 0.86118 0.85941 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 10.24 37.16 0.38 -1.84 16 2 C 0.10 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.81 2.46 -175.06 -0.43 -13.24 16 4 C 0.25 6.59 5.16 -5.19 -0.03 6.56 16 5 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.51 11.11 7.75 -10.99 -0.09 11.02 16 14 O -0.52 -14.22 16.08 -14.36 -0.23 -14.45 16 15 C 0.04 0.70 4.97 36.01 0.18 0.88 16 16 O -0.35 -6.12 9.86 -55.14 -0.54 -6.66 16 17 C 0.10 1.22 6.06 36.01 0.22 1.44 16 18 C -0.09 -1.09 5.51 -104.62 -0.58 -1.67 16 19 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 20 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 21 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 22 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 23 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 24 H 0.05 0.62 7.22 -51.92 -0.37 0.25 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 29 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.07 0.98 7.40 -51.93 -0.38 0.59 16 33 H 0.07 0.92 7.18 -51.93 -0.37 0.55 16 34 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 36 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 343.22 15.07 5.17 5.17 Total: -1.00 -35.63 343.22 -8.67 -44.29 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.03 Total: -2.19 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.32 Total: -3.86 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.31 Total: -39.42 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.77 Total: -21.11 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.63 -8.67 -44.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264075305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.555 kcal (2) G-P(sol) polarization free energy of solvation -35.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds