Wall clock time and date at job start Mon Mar 30 2020 01:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99773 * 2 1 4 4 C 1.50700 * 109.47193 * 293.95062 * 3 2 1 5 5 C 1.38296 * 119.93011 * 269.73292 * 4 3 2 6 6 C 1.38099 * 120.07001 * 179.72491 * 5 4 3 7 7 C 1.38887 * 119.92551 * 0.54409 * 6 5 4 8 8 O 1.35753 * 120.06510 * 179.74908 * 7 6 5 9 9 C 1.34830 * 116.99641 * 174.22529 * 8 7 6 10 10 H 1.07999 * 120.00182 * 5.07514 * 9 8 7 11 11 C 1.38658 * 119.99928 * 185.08001 * 9 8 7 12 12 N 1.31555 * 119.99884 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99845 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47434 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46917 * 120.00083 * 13 11 9 16 16 H 1.48500 * 109.47360 * 239.99512 * 13 11 9 17 17 C 1.38878 * 119.86423 * 359.72905 * 7 6 5 18 18 C 1.38101 * 119.93029 * 359.97438 * 17 7 6 19 19 C 1.46904 * 110.99864 * 123.95315 * 2 1 3 20 20 H 1.09006 * 110.80190 * 303.97187 * 19 2 1 21 21 C 1.54808 * 110.90860 * 180.34623 * 19 2 1 22 22 C 1.54098 * 104.18755 * 220.92170 * 21 19 2 23 23 O 1.43741 * 107.29546 * 357.96508 * 22 21 19 24 24 C 1.44384 * 106.97467 * 26.51754 * 23 22 21 25 25 H 1.08998 * 109.47144 * 55.35197 * 1 2 3 26 26 H 1.09007 * 109.47142 * 175.35137 * 1 2 3 27 27 H 1.09005 * 109.47243 * 295.35010 * 1 2 3 28 28 H 1.09005 * 109.46791 * 173.94973 * 3 2 1 29 29 H 1.08998 * 109.47525 * 53.95480 * 3 2 1 30 30 H 1.08002 * 119.96666 * 359.97438 * 5 4 3 31 31 H 1.07994 * 120.04094 * 180.27004 * 6 5 4 32 32 H 0.97001 * 119.99986 * 180.02562 * 12 11 9 33 33 H 1.08000 * 120.03484 * 179.97438 * 17 7 6 34 34 H 1.08000 * 119.96983 * 179.97438 * 18 17 7 35 35 H 1.09004 * 110.48459 * 339.59551 * 21 19 2 36 36 H 1.08997 * 110.48777 * 102.10629 * 21 19 2 37 37 H 1.09003 * 109.87973 * 117.39527 * 22 21 19 38 38 H 1.09002 * 109.87789 * 238.54404 * 22 21 19 39 39 H 1.09000 * 110.61859 * 201.43982 * 24 23 22 40 40 H 1.08997 * 110.61816 * 78.43539 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 6 2.4980 1.9686 -2.3778 6 6 2.1697 2.5819 -3.5708 7 6 0.9787 3.2876 -3.6824 8 8 0.6556 3.8958 -4.8523 9 6 -0.5659 4.4612 -4.9312 10 1 -1.2051 4.4894 -4.0612 11 6 -1.0014 5.0063 -6.1294 12 7 -0.2226 4.9724 -7.1891 13 14 -2.6940 5.7890 -6.2389 14 1 -3.3674 5.6989 -4.9185 15 1 -2.5555 7.2153 -6.6283 16 1 -3.5048 5.0745 -7.2574 17 6 0.1188 3.3693 -2.5950 18 6 0.4499 2.7486 -1.4065 19 6 1.9954 -0.7660 1.1376 20 1 1.6026 -0.3808 2.0787 21 6 3.5435 -0.7574 1.1405 22 6 3.9285 -2.1983 1.5279 23 8 2.7070 -2.9174 1.7670 24 6 1.6793 -2.2754 0.9819 25 1 -0.3633 0.5842 -0.8454 26 1 -0.3634 -1.0243 -0.0833 27 1 -0.3634 0.4400 0.9287 28 1 3.0797 1.3444 0.1083 29 1 1.5611 1.9274 0.8309 30 1 3.4262 1.4238 -2.2889 31 1 2.8404 2.5167 -4.4147 32 1 -0.5271 5.3541 -8.0273 33 1 -0.8079 3.9176 -2.6786 34 1 -0.2181 2.8121 -0.5603 35 1 3.9254 -0.5139 0.1490 36 1 3.9197 -0.0484 1.8779 37 1 4.4807 -2.6663 0.7129 38 1 4.5362 -2.1890 2.4327 39 1 0.6916 -2.5040 1.3821 40 1 1.7504 -2.5765 -0.0632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264593470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:30 Heat of formation + Delta-G solvation = -38.775444 kcal Electronic energy + Delta-G solvation = -21095.526768 eV Core-core repulsion = 17876.226997 eV Total energy + Delta-G solvation = -3219.299771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91163 -39.03061 -37.33434 -35.77078 -32.36485 -31.41853 -30.31103 -30.18350 -28.37671 -26.66068 -25.40245 -23.50600 -22.47855 -21.94294 -20.76419 -20.00246 -17.99601 -16.99181 -16.88439 -16.56947 -15.56099 -14.90093 -14.82221 -14.60372 -14.40864 -14.19808 -13.66639 -13.53547 -13.42788 -13.15007 -12.83388 -12.70989 -12.18657 -11.97611 -11.76358 -11.50658 -11.40229 -11.28577 -11.12895 -11.05340 -10.73257 -10.60836 -10.53276 -10.42555 -9.87342 -9.34281 -8.85434 -8.36971 -8.16743 -7.18942 -6.46591 -4.05415 2.20669 2.25594 3.10568 3.12444 3.17923 3.61879 3.95039 4.02380 4.35194 4.61391 4.66329 4.79683 5.03248 5.06812 5.08273 5.21015 5.27092 5.32512 5.48079 5.48988 5.53931 5.56862 5.65783 5.69258 5.73660 5.78911 5.83833 5.89408 6.07055 6.20381 6.40819 6.59394 6.69393 6.88023 6.97207 7.03289 7.13037 7.25839 7.38125 7.43366 7.81629 7.98541 8.99204 9.69553 10.71533 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039406 B = 0.003236 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.382361 B = 8650.253402 C = 8966.287414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.525 5.525 3 C 0.111 3.889 4 C -0.180 4.180 5 C -0.053 4.053 6 C -0.194 4.194 7 C 0.156 3.844 8 O -0.178 6.178 9 C -0.392 4.392 10 H 0.092 0.908 11 C 0.039 3.961 12 N -0.862 5.862 13 Si 0.941 3.059 14 H -0.267 1.267 15 H -0.276 1.276 16 H -0.276 1.276 17 C -0.234 4.234 18 C -0.065 4.065 19 C 0.049 3.951 20 H 0.054 0.946 21 C -0.153 4.153 22 C 0.050 3.950 23 O -0.382 6.382 24 C 0.056 3.944 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.022 0.978 28 H 0.076 0.924 29 H 0.032 0.968 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.269 0.731 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.907 -9.559 15.596 18.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.250 5.250 3 C -0.015 4.015 4 C -0.181 4.181 5 C -0.071 4.071 6 C -0.213 4.213 7 C 0.102 3.898 8 O -0.081 6.081 9 C -0.468 4.468 10 H 0.110 0.890 11 C -0.165 4.165 12 N -0.497 5.497 13 Si 0.766 3.234 14 H -0.191 1.191 15 H -0.201 1.201 16 H -0.201 1.201 17 C -0.254 4.254 18 C -0.084 4.084 19 C -0.061 4.061 20 H 0.072 0.928 21 C -0.191 4.191 22 C -0.027 4.027 23 O -0.300 6.300 24 C -0.020 4.020 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.040 0.960 28 H 0.094 0.906 29 H 0.050 0.950 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.120 0.880 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.157 -9.866 14.854 18.310 hybrid contribution -1.190 1.063 0.529 1.681 sum 2.966 -8.803 15.383 17.970 Atomic orbital electron populations 1.22485 0.87076 1.02092 1.01183 1.62137 1.08209 1.14308 1.40332 1.20857 0.99519 0.86524 0.94644 1.19033 0.97524 1.05870 0.95678 1.20429 0.98004 0.96987 0.91712 1.20220 0.97860 1.04548 0.98714 1.19398 0.93104 0.90470 0.86792 1.83981 1.34067 1.61017 1.29084 1.21369 0.90767 1.36681 0.97966 0.89047 1.25291 0.99705 0.97324 0.94214 1.70047 1.36245 1.42420 1.01004 0.85651 0.80252 0.78722 0.78818 1.19121 1.20146 1.20124 1.21121 1.02645 1.07818 0.93787 1.20589 0.95260 0.96168 0.96380 1.23211 0.94869 0.94984 0.92990 0.92785 1.23036 0.95194 0.97341 1.03492 1.23108 0.87733 0.90856 1.00996 1.88856 1.18624 1.54538 1.68008 1.23557 0.91763 0.90121 0.96606 0.89841 0.91793 0.95962 0.90587 0.95002 0.87180 0.86573 0.92058 0.85656 0.87964 0.89162 0.90645 0.92163 0.90067 0.89303 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.08 60.06 0.55 0.78 16 2 N -0.52 -6.50 4.60 -233.90 -1.08 -7.57 16 3 C 0.11 1.45 4.90 -4.98 -0.02 1.43 16 4 C -0.18 -2.96 4.90 -104.58 -0.51 -3.48 16 5 C -0.05 -0.92 9.69 -39.61 -0.38 -1.31 16 6 C -0.19 -4.07 9.99 -39.39 -0.39 -4.46 16 7 C 0.16 3.74 6.65 -39.10 -0.26 3.48 16 8 O -0.18 -5.07 9.76 0.04 0.00 -5.07 16 9 C -0.39 -10.89 9.49 30.89 0.29 -10.59 16 10 H 0.09 2.35 5.21 -52.49 -0.27 2.08 16 11 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 12 N -0.86 -25.22 13.67 55.48 0.76 -24.46 16 13 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 14 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 15 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 17 C -0.23 -5.00 9.17 -39.39 -0.36 -5.36 16 18 C -0.07 -1.16 7.88 -39.61 -0.31 -1.47 16 19 C 0.05 0.51 2.81 -65.70 -0.18 0.33 16 20 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 21 C -0.15 -1.41 5.38 -25.21 -0.14 -1.55 16 22 C 0.05 0.46 7.70 37.73 0.29 0.75 16 23 O -0.38 -4.41 11.52 -35.23 -0.41 -4.81 16 24 C 0.06 0.59 6.43 38.21 0.25 0.84 16 25 H 0.08 1.17 5.83 -51.93 -0.30 0.86 16 26 H 0.06 0.68 7.37 -51.93 -0.38 0.30 16 27 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 0.91 6.28 -51.93 -0.33 0.58 16 29 H 0.03 0.40 8.06 -51.93 -0.42 -0.01 16 30 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 32 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 34 H 0.10 1.57 7.97 -52.49 -0.42 1.15 16 35 H 0.09 0.88 7.39 -51.93 -0.38 0.50 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.83 8.05 -51.93 -0.42 0.41 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -30.34 325.06 -7.87 -38.21 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.74 Total: 3.06 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -1.29 Total: -19.64 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: -0.32 Total: -32.03 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.41 Total: -9.88 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.34 -7.87 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264593470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.565 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds