Wall clock time and date at job start Mon Mar 30 2020 01:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 110.99773 * 2 1 4 4 C 1.50700 * 109.47193 * 293.95062 * 3 2 1 5 5 C 1.38296 * 119.93011 * 269.73292 * 4 3 2 6 6 C 1.38099 * 120.07001 * 179.72491 * 5 4 3 7 7 C 1.38887 * 119.92551 * 0.54409 * 6 5 4 8 8 O 1.35753 * 120.06510 * 179.74908 * 7 6 5 9 9 C 1.34830 * 116.99641 * 174.22529 * 8 7 6 10 10 H 1.07999 * 120.00182 * 5.07514 * 9 8 7 11 11 C 1.38658 * 119.99928 * 185.08001 * 9 8 7 12 12 N 1.31555 * 119.99884 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 119.99845 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47434 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46917 * 120.00083 * 13 11 9 16 16 H 1.48500 * 109.47360 * 239.99512 * 13 11 9 17 17 C 1.38878 * 119.86423 * 359.72905 * 7 6 5 18 18 C 1.38101 * 119.93029 * 359.97438 * 17 7 6 19 19 C 1.46904 * 110.99864 * 123.95315 * 2 1 3 20 20 H 1.09006 * 110.80190 * 303.97187 * 19 2 1 21 21 C 1.54808 * 110.90860 * 180.34623 * 19 2 1 22 22 C 1.54098 * 104.18755 * 220.92170 * 21 19 2 23 23 O 1.43741 * 107.29546 * 357.96508 * 22 21 19 24 24 C 1.44384 * 106.97467 * 26.51754 * 23 22 21 25 25 H 1.08998 * 109.47144 * 55.35197 * 1 2 3 26 26 H 1.09007 * 109.47142 * 175.35137 * 1 2 3 27 27 H 1.09005 * 109.47243 * 295.35010 * 1 2 3 28 28 H 1.09005 * 109.46791 * 173.94973 * 3 2 1 29 29 H 1.08998 * 109.47525 * 53.95480 * 3 2 1 30 30 H 1.08002 * 119.96666 * 359.97438 * 5 4 3 31 31 H 1.07994 * 120.04094 * 180.27004 * 6 5 4 32 32 H 0.97001 * 119.99986 * 180.02562 * 12 11 9 33 33 H 1.08000 * 120.03484 * 179.97438 * 17 7 6 34 34 H 1.08000 * 119.96983 * 179.97438 * 18 17 7 35 35 H 1.09004 * 110.48459 * 339.59551 * 21 19 2 36 36 H 1.08997 * 110.48777 * 102.10629 * 21 19 2 37 37 H 1.09003 * 109.87973 * 117.39527 * 22 21 19 38 38 H 1.09002 * 109.87789 * 238.54404 * 22 21 19 39 39 H 1.09000 * 110.61859 * 201.43982 * 24 23 22 40 40 H 1.08997 * 110.61816 * 78.43539 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 6 2.4980 1.9686 -2.3778 6 6 2.1697 2.5819 -3.5708 7 6 0.9787 3.2876 -3.6824 8 8 0.6556 3.8958 -4.8523 9 6 -0.5659 4.4612 -4.9312 10 1 -1.2051 4.4894 -4.0612 11 6 -1.0014 5.0063 -6.1294 12 7 -0.2226 4.9724 -7.1891 13 14 -2.6940 5.7890 -6.2389 14 1 -3.3674 5.6989 -4.9185 15 1 -2.5555 7.2153 -6.6283 16 1 -3.5048 5.0745 -7.2574 17 6 0.1188 3.3693 -2.5950 18 6 0.4499 2.7486 -1.4065 19 6 1.9954 -0.7660 1.1376 20 1 1.6026 -0.3808 2.0787 21 6 3.5435 -0.7574 1.1405 22 6 3.9285 -2.1983 1.5279 23 8 2.7070 -2.9174 1.7670 24 6 1.6793 -2.2754 0.9819 25 1 -0.3633 0.5842 -0.8454 26 1 -0.3634 -1.0243 -0.0833 27 1 -0.3634 0.4400 0.9287 28 1 3.0797 1.3444 0.1083 29 1 1.5611 1.9274 0.8309 30 1 3.4262 1.4238 -2.2889 31 1 2.8404 2.5167 -4.4147 32 1 -0.5271 5.3541 -8.0273 33 1 -0.8079 3.9176 -2.6786 34 1 -0.2181 2.8121 -0.5603 35 1 3.9254 -0.5139 0.1490 36 1 3.9197 -0.0484 1.8779 37 1 4.4807 -2.6663 0.7129 38 1 4.5362 -2.1890 2.4327 39 1 0.6916 -2.5040 1.3821 40 1 1.7504 -2.5765 -0.0632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264593470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:30 Heat of formation + Delta-G solvation = -59.084314 kcal Electronic energy + Delta-G solvation = -21096.407427 eV Core-core repulsion = 17876.226997 eV Total energy + Delta-G solvation = -3220.180430 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98783 -40.46010 -38.74812 -37.05888 -34.31128 -32.40260 -31.76280 -31.48235 -29.31136 -27.92542 -27.20941 -24.69033 -23.58009 -23.20380 -22.08484 -21.06210 -19.82479 -18.80466 -17.70307 -17.44186 -16.61757 -16.41067 -16.18183 -15.96103 -15.64441 -15.39601 -15.32858 -15.01711 -14.51026 -14.26571 -14.13190 -14.05646 -13.59759 -13.32406 -12.99387 -12.82295 -12.68253 -12.51759 -12.32789 -12.10663 -12.05125 -11.90340 -11.85124 -11.69963 -11.15598 -10.79659 -10.64717 -9.74871 -9.32209 -8.87801 -8.47032 -6.15052 0.61764 0.68514 1.34901 1.43068 1.53143 2.17574 2.66113 2.91176 3.11970 3.35703 3.54180 3.59004 3.91218 4.00761 4.04853 4.09039 4.21858 4.29673 4.33552 4.42342 4.50696 4.61290 4.64959 4.77689 4.79324 4.82068 4.86261 4.91620 5.00407 5.08344 5.10247 5.14106 5.16120 5.31888 5.58853 5.72764 5.80086 5.83291 6.03575 6.06323 6.18676 6.26914 6.97968 7.79621 8.76582 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039406 B = 0.003236 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.382361 B = 8650.253402 C = 8966.287414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.535 5.535 3 C 0.114 3.886 4 C -0.152 4.152 5 C -0.047 4.047 6 C -0.206 4.206 7 C 0.114 3.886 8 O -0.234 6.234 9 C -0.412 4.412 10 H 0.101 0.899 11 C -0.024 4.024 12 N -0.921 5.921 13 Si 1.019 2.981 14 H -0.251 1.251 15 H -0.268 1.268 16 H -0.269 1.269 17 C -0.243 4.243 18 C -0.060 4.060 19 C 0.051 3.949 20 H 0.061 0.939 21 C -0.150 4.150 22 C 0.046 3.954 23 O -0.401 6.401 24 C 0.057 3.943 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.036 0.964 28 H 0.096 0.904 29 H 0.046 0.954 30 H 0.145 0.855 31 H 0.111 0.889 32 H 0.272 0.728 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.870 -10.543 18.895 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.260 5.260 3 C -0.013 4.013 4 C -0.153 4.153 5 C -0.065 4.065 6 C -0.226 4.226 7 C 0.064 3.936 8 O -0.141 6.141 9 C -0.488 4.488 10 H 0.119 0.881 11 C -0.221 4.221 12 N -0.560 5.560 13 Si 0.838 3.162 14 H -0.174 1.174 15 H -0.193 1.193 16 H -0.194 1.194 17 C -0.262 4.262 18 C -0.079 4.079 19 C -0.057 4.057 20 H 0.079 0.921 21 C -0.187 4.187 22 C -0.031 4.031 23 O -0.320 6.320 24 C -0.020 4.020 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.114 0.886 29 H 0.065 0.935 30 H 0.163 0.837 31 H 0.129 0.871 32 H 0.081 0.919 33 H 0.134 0.866 34 H 0.152 0.848 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.143 -10.882 18.213 21.617 hybrid contribution -0.995 1.136 -0.197 1.523 sum 3.147 -9.747 18.017 20.725 Atomic orbital electron populations 1.22479 0.86969 1.02616 1.00862 1.62040 1.08448 1.13737 1.41775 1.20869 1.00986 0.86927 0.92523 1.19542 0.95862 1.03147 0.96792 1.20822 0.99391 0.95866 0.90425 1.20470 0.97050 1.04808 1.00238 1.19941 0.94942 0.92037 0.86669 1.83944 1.34840 1.63741 1.31565 1.21849 0.91228 1.36993 0.98754 0.88149 1.26586 1.04252 0.97789 0.93474 1.70191 1.38915 1.44994 1.01887 0.84531 0.74527 0.77677 0.79478 1.17448 1.19330 1.19391 1.21208 1.02071 1.08383 0.94562 1.20910 0.96182 0.94948 0.95812 1.23214 0.95719 0.94464 0.92333 0.92094 1.23045 0.94134 0.97745 1.03819 1.23261 0.87153 0.90654 1.02026 1.88844 1.19567 1.55321 1.68223 1.23561 0.92160 0.90146 0.96145 0.92057 0.90713 0.94563 0.88603 0.93541 0.83703 0.87097 0.91865 0.86591 0.84826 0.89525 0.89007 0.91888 0.88445 0.88380 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.08 127.69 1.16 1.55 16 2 N -0.53 -11.16 4.60 -893.94 -4.12 -15.27 16 3 C 0.11 2.45 4.90 85.56 0.42 2.87 16 4 C -0.15 -4.54 4.90 -19.84 -0.10 -4.64 16 5 C -0.05 -1.53 9.69 22.25 0.22 -1.32 16 6 C -0.21 -8.78 9.99 22.39 0.22 -8.55 16 7 C 0.11 5.70 6.65 22.58 0.15 5.85 16 8 O -0.23 -14.20 9.76 -22.78 -0.22 -14.42 16 9 C -0.41 -24.11 9.49 67.92 0.64 -23.47 16 10 H 0.10 5.40 5.21 -2.91 -0.02 5.38 16 11 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 12 N -0.92 -56.88 13.67 21.61 0.30 -56.59 16 13 Si 1.02 42.96 29.55 68.60 2.03 44.99 16 14 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 15 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 16 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 17 C -0.24 -10.48 9.17 22.39 0.21 -10.27 16 18 C -0.06 -2.00 7.88 22.25 0.18 -1.82 16 19 C 0.05 0.88 2.81 46.22 0.13 1.01 16 20 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 21 C -0.15 -2.17 5.38 31.58 0.17 -2.00 16 22 C 0.05 0.69 7.70 72.35 0.56 1.25 16 23 O -0.40 -8.19 11.52 -148.98 -1.72 -9.90 16 24 C 0.06 1.03 6.43 72.67 0.47 1.50 16 25 H 0.06 1.55 5.83 -2.39 -0.01 1.53 16 26 H 0.07 1.38 7.37 -2.38 -0.02 1.36 16 27 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.10 1.77 6.28 -2.38 -0.01 1.75 16 29 H 0.05 0.93 8.06 -2.39 -0.02 0.91 16 30 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 32 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 33 H 0.12 5.13 5.64 -2.91 -0.02 5.11 16 34 H 0.13 3.63 7.97 -2.91 -0.02 3.60 16 35 H 0.09 1.34 7.39 -2.39 -0.02 1.32 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.10 1.55 8.05 -2.39 -0.02 1.54 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.27 325.06 2.18 -68.09 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 1.03 Total: 22.05 kcal Atomic # 6 Polarization: -43.82 SS G_CDS: 4.89 Total: -38.94 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -3.82 Total: -71.86 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -1.94 Total: -24.32 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -70.27 2.18 -68.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264593470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.001 kcal (2) G-P(sol) polarization free energy of solvation -70.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds