Wall clock time and date at job start Mon Mar 30 2020 01:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 116.99867 * 2 1 4 4 O 1.20830 * 120.00323 * 359.72425 * 3 2 1 5 5 C 1.50706 * 120.00024 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46564 * 299.72723 * 5 3 2 7 7 C 1.50700 * 109.46871 * 59.72047 * 5 3 2 8 8 C 1.38240 * 119.99637 * 79.73175 * 7 5 3 9 9 C 1.38234 * 119.99607 * 179.80848 * 8 7 5 10 10 C 1.38241 * 120.00148 * 0.39350 * 9 8 7 11 11 C 1.38232 * 119.99642 * 359.85768 * 10 9 8 12 12 C 1.38227 * 120.00401 * 359.95767 * 11 10 9 13 13 N 1.46895 * 109.47182 * 179.72426 * 5 3 2 14 14 C 1.46902 * 111.00036 * 183.95339 * 13 5 3 15 15 C 1.46897 * 111.00425 * 60.00041 * 13 5 3 16 16 C 1.53001 * 109.47445 * 189.99776 * 15 13 5 17 17 C 1.50704 * 109.46896 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00284 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99395 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00374 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99353 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47043 * 90.00387 * 21 19 17 23 23 H 1.48504 * 109.47051 * 209.99931 * 21 19 17 24 24 H 1.48500 * 109.47601 * 330.00267 * 21 19 17 25 25 H 1.09009 * 109.46864 * 300.00062 * 1 2 3 26 26 H 1.09001 * 109.47271 * 60.00074 * 1 2 3 27 27 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99998 * 359.97438 * 8 7 5 29 29 H 1.08005 * 119.99839 * 180.22936 * 9 8 7 30 30 H 1.08001 * 119.99609 * 179.83425 * 10 9 8 31 31 H 1.08002 * 119.99539 * 179.97438 * 11 10 9 32 32 H 1.08002 * 120.00195 * 179.97438 * 12 11 10 33 33 H 1.09007 * 109.47093 * 59.99619 * 14 13 5 34 34 H 1.09000 * 109.47293 * 179.97438 * 14 13 5 35 35 H 1.09005 * 109.47133 * 300.00467 * 14 13 5 36 36 H 1.09000 * 109.47112 * 310.00102 * 15 13 5 37 37 H 1.09004 * 109.47337 * 69.99735 * 15 13 5 38 38 H 1.08999 * 109.47189 * 299.99700 * 16 15 13 39 39 H 1.09001 * 109.46781 * 60.00441 * 16 15 13 40 40 H 0.96999 * 119.99993 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 1 3.9561 0.7848 0.8916 7 6 4.1049 0.5860 -1.2279 8 6 4.0994 1.2398 -2.4459 9 6 4.5970 0.6094 -3.5710 10 6 5.0928 -0.6779 -3.4797 11 6 5.0936 -1.3334 -2.2627 12 6 4.5994 -0.7017 -1.1369 13 7 3.9828 2.6835 -0.0071 14 6 5.4441 2.8000 -0.1024 15 6 3.4747 3.3883 1.1774 16 6 3.7104 4.8915 1.0166 17 6 3.1885 5.6145 2.2316 18 1 2.7346 5.0575 3.0379 19 6 3.2916 6.9869 2.3141 20 7 3.8447 7.6651 1.3325 21 14 2.6453 7.8830 3.8204 22 1 3.7253 7.9897 4.8341 23 1 2.1953 9.2438 3.4317 24 1 1.5018 7.1281 4.3929 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.7086 2.2440 -2.5180 29 1 4.5961 1.1215 -4.5219 30 1 5.4792 -1.1713 -4.3593 31 1 5.4806 -2.3392 -2.1915 32 1 4.5997 -1.2141 -0.1862 33 1 5.7867 2.3299 -1.0243 34 1 5.7252 3.8532 -0.1058 35 1 5.9047 2.3033 0.7516 36 1 2.4069 3.1972 1.2836 37 1 3.9977 3.0314 2.0647 38 1 4.7782 5.0825 0.9105 39 1 3.1873 5.2484 0.1294 40 1 3.9175 8.6306 1.3908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265537319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:19 Heat of formation + Delta-G solvation = -64.845124 kcal Electronic energy + Delta-G solvation = -21779.499816 eV Core-core repulsion = 18559.069579 eV Total energy + Delta-G solvation = -3220.430237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.95155 -40.15525 -38.56199 -37.21345 -35.31621 -33.34986 -31.79638 -31.00114 -29.64199 -28.09029 -27.10433 -24.82887 -23.46671 -23.16155 -21.97354 -21.20952 -18.84864 -18.62305 -17.95375 -17.73323 -17.16611 -16.65506 -16.53997 -16.02260 -15.61272 -15.34655 -15.03121 -14.55926 -14.39211 -14.21595 -14.04153 -13.90039 -13.65254 -13.36915 -13.19405 -12.98092 -12.86674 -12.61126 -12.49664 -12.14561 -12.01686 -11.87136 -11.77216 -11.50929 -11.28252 -11.07824 -10.52418 -9.77021 -9.65161 -9.34859 -8.20754 -6.31915 0.34608 0.54914 1.11979 1.37473 1.40167 1.51132 1.58119 2.38938 2.78465 3.09055 3.12284 3.54990 3.82198 3.90681 4.16555 4.23300 4.28673 4.29983 4.33188 4.34847 4.40608 4.61074 4.66230 4.67454 4.72941 4.75727 4.97045 5.04993 5.07351 5.21450 5.31773 5.42185 5.55814 5.63669 5.64943 5.67138 5.77275 6.02853 6.06677 6.14340 6.28353 6.72856 6.83753 7.36378 8.91666 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021421 B = 0.004610 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.815953 B = 6072.285259 C = 6915.876937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.465 3.535 4 O -0.513 6.513 5 C 0.136 3.864 6 H 0.097 0.903 7 C -0.093 4.093 8 C -0.107 4.107 9 C -0.131 4.131 10 C -0.112 4.112 11 C -0.120 4.120 12 C -0.102 4.102 13 N -0.535 5.535 14 C 0.034 3.966 15 C 0.066 3.934 16 C 0.045 3.955 17 C -0.545 4.545 18 H 0.055 0.945 19 C 0.003 3.997 20 N -0.931 5.931 21 Si 0.967 3.033 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.266 1.266 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.140 0.860 28 H 0.105 0.895 29 H 0.135 0.865 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.141 0.859 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.072 0.928 37 H 0.023 0.977 38 H 0.000 1.000 39 H -0.015 1.015 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.132 -22.525 -7.078 23.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.308 3.692 4 O -0.401 6.401 5 C 0.027 3.973 6 H 0.114 0.886 7 C -0.094 4.094 8 C -0.126 4.126 9 C -0.149 4.149 10 C -0.129 4.129 11 C -0.137 4.137 12 C -0.120 4.120 13 N -0.261 5.261 14 C -0.113 4.113 15 C -0.061 4.061 16 C 0.008 3.992 17 C -0.583 4.583 18 H 0.073 0.927 19 C -0.195 4.195 20 N -0.571 5.571 21 Si 0.791 3.209 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.191 1.191 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.123 0.877 29 H 0.153 0.847 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.159 0.841 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.090 0.910 37 H 0.041 0.959 38 H 0.018 0.982 39 H 0.003 0.997 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.724 -21.845 -7.544 23.123 hybrid contribution -0.348 1.008 1.351 1.721 sum 0.376 -20.838 -6.193 21.741 Atomic orbital electron populations 1.23555 0.74827 1.05835 1.02223 1.86467 1.24833 1.31917 1.83853 1.23741 0.91989 0.81519 0.71995 1.90699 1.67328 1.37214 1.44845 1.20077 0.87122 0.90972 0.99170 0.88563 1.19257 1.02115 0.95466 0.92559 1.21094 0.99023 0.99670 0.92802 1.21378 0.99109 0.96101 0.98263 1.21554 0.98189 0.94271 0.98930 1.21442 0.99295 1.01075 0.91938 1.21228 0.97394 0.92867 1.00528 1.61731 1.12944 1.09153 1.42257 1.22376 0.85200 1.02173 1.01529 1.22279 0.99944 0.95416 0.88411 1.18816 0.95074 0.90232 0.95115 1.21576 1.39509 0.92808 1.04422 0.92663 1.25953 0.95377 0.98498 0.99698 1.70108 1.45424 1.07629 1.33893 0.85426 0.78922 0.77599 0.78957 1.19277 1.20529 1.19089 0.92399 0.92494 0.84187 0.87709 0.84690 0.83221 0.82839 0.84136 0.89792 0.92267 0.94521 0.91006 0.95887 0.98177 0.99667 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.35 -9.82 10.48 -51.34 -0.54 -10.36 16 3 C 0.47 16.09 6.88 71.24 0.49 16.58 16 4 O -0.51 -22.16 13.63 21.95 0.30 -21.86 16 5 C 0.14 4.31 2.19 43.43 0.10 4.41 16 6 H 0.10 2.68 8.00 -2.39 -0.02 2.66 16 7 C -0.09 -2.48 3.69 -19.86 -0.07 -2.55 16 8 C -0.11 -2.98 8.08 22.27 0.18 -2.80 16 9 C -0.13 -2.79 10.05 22.27 0.22 -2.56 16 10 C -0.11 -1.85 10.05 22.27 0.22 -1.62 16 11 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 12 C -0.10 -2.04 9.67 22.27 0.22 -1.83 16 13 N -0.54 -20.97 3.78 -905.90 -3.42 -24.39 16 14 C 0.03 1.19 8.94 127.69 1.14 2.33 16 15 C 0.07 3.11 4.49 86.30 0.39 3.50 16 16 C 0.05 2.58 4.90 29.85 0.15 2.73 16 17 C -0.54 -33.05 9.11 25.60 0.23 -32.82 16 18 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 19 C 0.00 0.16 5.46 84.66 0.46 0.62 16 20 N -0.93 -58.90 13.29 21.45 0.28 -58.62 16 21 Si 0.97 46.09 29.54 68.60 2.03 48.12 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 25 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 27 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.10 3.50 7.73 -2.91 -0.02 3.48 16 29 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 30 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.14 2.25 8.04 -2.91 -0.02 2.23 16 33 H 0.08 2.53 6.12 -2.38 -0.01 2.52 16 34 H 0.06 2.35 6.30 -2.39 -0.02 2.34 16 35 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.07 3.59 5.21 -2.39 -0.01 3.58 16 37 H 0.02 1.03 8.12 -2.38 -0.02 1.01 16 38 H 0.00 0.00 6.47 -2.39 -0.02 -0.02 16 39 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 40 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -75.41 333.06 4.81 -70.60 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 1.02 Total: 10.41 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 5.15 Total: -13.90 kcal Atomic # 7 Polarization: -79.87 SS G_CDS: -3.14 Total: -83.01 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.24 Total: -32.22 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -75.41 4.81 -70.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265537319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.754 kcal (2) G-P(sol) polarization free energy of solvation -75.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds