Wall clock time and date at job start Mon Mar 30 2020 01:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34233 * 116.99940 * 2 1 4 4 O 1.20819 * 119.99909 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99853 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47286 * 59.99591 * 5 3 2 7 7 C 1.50703 * 109.46901 * 300.00187 * 5 3 2 8 8 C 1.38235 * 120.00292 * 100.00039 * 7 5 3 9 9 C 1.38230 * 119.99899 * 179.97438 * 8 7 5 10 10 C 1.38235 * 120.00326 * 359.95697 * 9 8 7 11 11 C 1.38234 * 119.99814 * 359.97438 * 10 9 8 12 12 C 1.38234 * 119.99503 * 279.97332 * 7 5 3 13 13 N 1.46896 * 109.47169 * 179.97438 * 5 3 2 14 14 C 1.46898 * 110.99978 * 176.04308 * 13 5 3 15 15 C 1.46899 * 110.99782 * 299.99949 * 13 5 3 16 16 C 1.53008 * 109.46811 * 169.99828 * 15 13 5 17 17 C 1.50706 * 109.46949 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99747 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99711 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00185 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99704 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47166 * 60.00259 * 21 19 17 23 23 H 1.48505 * 109.47114 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47210 * 300.00371 * 21 19 17 25 25 H 1.09002 * 109.47677 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47396 * 299.99915 * 1 2 3 27 27 H 1.09000 * 109.47183 * 59.99840 * 1 2 3 28 28 H 1.08001 * 119.99730 * 359.97438 * 8 7 5 29 29 H 1.08000 * 120.00376 * 179.97438 * 9 8 7 30 30 H 1.08000 * 120.00616 * 179.72578 * 10 9 8 31 31 H 1.08001 * 120.00299 * 179.97438 * 11 10 9 32 32 H 1.07997 * 120.00455 * 0.02562 * 12 7 5 33 33 H 1.09008 * 109.46991 * 60.00493 * 14 13 5 34 34 H 1.08999 * 109.47198 * 179.97438 * 14 13 5 35 35 H 1.08994 * 109.47443 * 300.00101 * 14 13 5 36 36 H 1.08993 * 109.47478 * 289.99508 * 15 13 5 37 37 H 1.08999 * 109.47184 * 50.00362 * 15 13 5 38 38 H 1.09002 * 109.47350 * 299.99883 * 16 15 13 39 39 H 1.08999 * 109.46811 * 60.00305 * 16 15 13 40 40 H 0.97004 * 120.00118 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7809 -0.8908 7 6 4.1056 0.5914 1.2295 8 6 4.6000 -0.6966 1.1440 9 6 5.0951 -1.3233 2.2722 10 6 5.0966 -0.6616 3.4859 11 6 4.6035 0.6270 3.5712 12 6 4.1063 1.2529 2.4434 13 7 3.9828 2.6835 -0.0011 14 6 5.4441 2.8004 0.0930 15 6 3.4741 3.3825 -1.1888 16 6 3.7098 4.8865 -1.0354 17 6 3.1884 5.6035 -2.2541 18 1 2.7340 5.0426 -3.0574 19 6 3.2906 6.9756 -2.3430 20 7 3.8435 7.6586 -1.3645 21 14 2.6438 7.8644 -3.8533 22 1 1.1890 7.6030 -3.9962 23 1 2.8726 9.3241 -3.7045 24 1 3.3560 7.3726 -5.0600 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 4.5994 -1.2133 0.1956 29 1 5.4810 -2.3298 2.2055 30 1 5.4794 -1.1528 4.3684 31 1 4.6043 1.1439 4.5195 32 1 3.7200 2.2592 2.5103 33 1 5.9043 2.2997 -0.7589 34 1 5.7253 3.8535 0.0902 35 1 5.7872 2.3349 1.0169 36 1 3.9966 3.0214 -2.0745 37 1 2.4062 3.1909 -1.2934 38 1 3.1873 5.2477 -0.1496 39 1 4.7777 5.0780 -0.9307 40 1 3.9157 8.6239 -1.4272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265537322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:22 Heat of formation + Delta-G solvation = -44.466485 kcal Electronic energy + Delta-G solvation = -21777.971486 eV Core-core repulsion = 18558.424933 eV Total energy + Delta-G solvation = -3219.546553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.68058 -39.13647 -37.23124 -35.83207 -33.28245 -31.88420 -30.88919 -29.20603 -28.53578 -26.93701 -25.29711 -23.12390 -22.51857 -22.07953 -20.35365 -19.79405 -17.57799 -16.88934 -16.72282 -16.25737 -16.02394 -15.29129 -15.06742 -14.44720 -14.25903 -14.04542 -13.82499 -13.36234 -13.28596 -12.90736 -12.64612 -12.32815 -12.20514 -12.07973 -11.90660 -11.36295 -11.12684 -11.04642 -11.02094 -10.89047 -10.61963 -10.51775 -10.27282 -9.60350 -9.30623 -9.04507 -8.89231 -8.69097 -8.25750 -7.85614 -5.93287 -3.94770 1.26473 1.42778 2.42618 2.74168 3.37524 3.41380 3.44200 3.76650 4.34580 4.55829 4.64570 4.91952 4.95853 5.01377 5.14373 5.15651 5.21429 5.29236 5.42639 5.50561 5.54335 5.63158 5.76489 5.89391 5.92279 6.08177 6.28714 6.40078 6.43093 6.45111 6.53421 6.55218 6.65199 6.98615 7.11120 7.38992 7.45150 7.80905 7.96944 8.03058 8.14831 8.50527 9.11549 9.67864 11.18250 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021405 B = 0.004611 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.786980 B = 6071.030445 C = 6916.289041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.362 6.362 3 C 0.463 3.537 4 O -0.466 6.466 5 C 0.135 3.865 6 H 0.078 0.922 7 C -0.079 4.079 8 C -0.101 4.101 9 C -0.126 4.126 10 C -0.118 4.118 11 C -0.126 4.126 12 C -0.084 4.084 13 N -0.520 5.520 14 C 0.026 3.974 15 C 0.047 3.953 16 C 0.035 3.965 17 C -0.518 4.518 18 H 0.052 0.948 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.278 1.278 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.021 0.979 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.017 0.983 37 H 0.085 0.915 38 H 0.026 0.974 39 H 0.015 0.985 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 -19.725 7.519 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.350 6.350 5 C 0.025 3.975 6 H 0.096 0.904 7 C -0.079 4.079 8 C -0.120 4.120 9 C -0.144 4.144 10 C -0.136 4.136 11 C -0.144 4.144 12 C -0.103 4.103 13 N -0.246 5.246 14 C -0.121 4.121 15 C -0.079 4.079 16 C -0.003 4.003 17 C -0.557 4.557 18 H 0.070 0.930 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.719 3.281 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.204 1.204 25 H 0.116 0.884 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.154 0.846 33 H 0.039 0.961 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.103 0.897 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.232 -18.996 7.973 20.602 hybrid contribution -0.197 0.248 -1.579 1.610 sum 0.035 -18.747 6.394 19.808 Atomic orbital electron populations 1.23215 0.76648 1.03225 1.02674 1.86480 1.23101 1.33660 1.84653 1.23419 0.91428 0.81461 0.73381 1.90714 1.66286 1.35607 1.42383 1.20013 0.87603 0.92919 0.96983 0.90429 1.19389 1.00327 0.94309 0.93886 1.20998 0.98071 0.94024 0.98899 1.21034 1.00763 0.99875 0.92760 1.21165 0.99703 0.95126 0.97622 1.21185 0.99428 0.95222 0.98549 1.21232 0.97168 1.00452 0.91409 1.61966 1.11804 1.06873 1.43942 1.22463 0.86222 1.03596 0.99849 1.22738 1.00456 0.98105 0.86582 1.19025 0.96920 0.86927 0.97391 1.21135 1.39060 0.91893 1.03646 0.92994 1.24966 0.95431 0.97595 0.96248 1.69962 1.44461 1.07039 1.31870 0.86671 0.79486 0.78530 0.83364 1.20262 1.21284 1.20353 0.88420 0.91969 0.91882 0.85999 0.86134 0.86314 0.85980 0.84582 0.96053 0.89491 0.91837 0.96498 0.89660 0.95545 0.96632 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.18 10.48 -39.27 -0.41 -5.59 16 3 C 0.46 7.88 6.88 36.01 0.25 8.13 16 4 O -0.47 -9.58 13.63 -18.74 -0.26 -9.84 16 5 C 0.13 2.14 2.19 -70.01 -0.15 1.99 16 6 H 0.08 1.13 8.00 -51.93 -0.42 0.71 16 7 C -0.08 -1.08 3.70 -104.62 -0.39 -1.47 16 8 C -0.10 -1.17 9.67 -39.59 -0.38 -1.55 16 9 C -0.13 -1.28 10.05 -39.59 -0.40 -1.67 16 10 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 11 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 12 C -0.08 -1.17 8.06 -39.58 -0.32 -1.48 16 13 N -0.52 -9.80 3.77 -237.69 -0.90 -10.70 16 14 C 0.03 0.44 8.94 60.06 0.54 0.98 16 15 C 0.05 1.05 4.49 -3.82 -0.02 1.04 16 16 C 0.03 0.94 4.90 -27.88 -0.14 0.80 16 17 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -27.48 13.29 55.43 0.74 -26.74 16 21 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.12 1.20 8.04 -52.49 -0.42 0.78 16 29 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.14 2.11 7.72 -52.49 -0.41 1.70 16 33 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 34 H 0.09 1.63 6.30 -51.93 -0.33 1.30 16 35 H 0.06 0.95 6.11 -51.93 -0.32 0.63 16 36 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 37 H 0.09 2.03 5.21 -51.93 -0.27 1.76 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.02 0.43 6.47 -51.93 -0.34 0.09 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -33.23 333.02 -7.82 -41.05 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.84 Total: -1.30 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -1.15 Total: -9.11 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.16 Total: -37.44 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.67 Total: -15.43 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.23 -7.82 -41.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265537322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.421 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds