Wall clock time and date at job start Mon Mar 30 2020 02:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00251 * 2 1 4 4 H 1.09000 * 110.64586 * 328.30506 * 3 2 1 5 5 C 1.54601 * 110.72114 * 91.45315 * 3 2 1 6 6 C 1.53990 * 105.13907 * 140.31902 * 5 3 2 7 7 N 1.47912 * 107.05929 * 1.22224 * 6 5 3 8 8 C 1.46891 * 110.99888 * 214.15800 * 7 6 5 9 9 C 1.50704 * 109.47431 * 69.87813 * 8 7 6 10 10 C 1.38299 * 119.93126 * 89.99730 * 9 8 7 11 11 C 1.38103 * 120.06649 * 180.02562 * 10 9 8 12 12 C 1.38880 * 119.92898 * 359.97438 * 11 10 9 13 13 O 1.35750 * 120.06482 * 180.02562 * 12 11 10 14 14 C 1.34833 * 117.00335 * 5.53090 * 13 12 11 15 15 H 1.07997 * 119.99574 * 354.94346 * 14 13 12 16 16 C 1.38653 * 120.00019 * 174.94064 * 14 13 12 17 17 N 1.31559 * 120.00119 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00106 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47492 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47357 * 300.00667 * 18 16 14 21 21 H 1.48502 * 109.46837 * 59.99973 * 18 16 14 22 22 C 1.38879 * 119.86441 * 0.27433 * 12 11 10 23 23 C 1.38099 * 119.93015 * 359.45160 * 22 12 11 24 24 C 1.48534 * 105.81679 * 334.67523 * 7 6 5 25 25 H 1.08993 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47107 * 300.00256 * 1 2 3 27 27 H 1.09007 * 109.46898 * 59.99961 * 1 2 3 28 28 H 1.09001 * 110.30749 * 21.39907 * 5 3 2 29 29 H 1.09001 * 110.30917 * 259.23328 * 5 3 2 30 30 H 1.08998 * 109.91975 * 241.87461 * 6 5 3 31 31 H 1.08997 * 110.08613 * 120.66956 * 6 5 3 32 32 H 1.09000 * 109.47471 * 309.87257 * 8 7 6 33 33 H 1.09011 * 109.47047 * 189.87228 * 8 7 6 34 34 H 1.07997 * 119.96906 * 359.97438 * 10 9 8 35 35 H 1.08002 * 120.03564 * 179.97438 * 11 10 9 36 36 H 0.96996 * 120.00022 * 359.97438 * 17 16 14 37 37 H 1.07995 * 120.03419 * 179.72744 * 22 12 11 38 38 H 1.07995 * 119.96912 * 180.27497 * 23 22 12 39 39 H 1.09000 * 110.66514 * 157.64112 * 24 7 6 40 40 H 1.09007 * 110.66189 * 280.76634 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3738 2.0096 -0.5359 5 6 2.2663 1.7903 1.4455 6 6 3.6255 2.5121 1.3929 7 7 4.0896 2.4615 -0.0107 8 6 5.5524 2.3458 -0.0776 9 6 5.9708 0.9795 0.4012 10 6 6.0780 -0.0645 -0.4996 11 6 6.4607 -1.3178 -0.0638 12 6 6.7384 -1.5291 1.2804 13 8 7.1153 -2.7599 1.7117 14 6 7.3120 -3.7048 0.7702 15 1 7.0906 -3.4901 -0.2648 16 6 7.7987 -4.9521 1.1308 17 7 8.0679 -5.2137 2.3917 18 14 8.0719 -6.2609 -0.1736 19 1 8.5929 -7.4958 0.4657 20 1 6.7852 -6.5601 -0.8519 21 1 9.0544 -5.7673 -1.1718 22 6 6.6248 -0.4800 2.1833 23 6 6.2472 0.7723 1.7405 24 6 3.4335 1.2720 -0.6114 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.3153 0.9405 2.1264 29 1 1.4829 2.4811 1.7572 30 1 4.3412 2.0038 2.0390 31 1 3.5113 3.5489 1.7090 32 1 6.0065 3.1076 0.5561 33 1 5.8813 2.4863 -1.1073 34 1 5.8615 0.1004 -1.5447 35 1 6.5439 -2.1328 -0.7676 36 1 7.9264 -4.5340 3.0690 37 1 6.8358 -0.6424 3.2299 38 1 6.1629 1.5897 2.4413 39 1 3.3883 1.3646 -1.6965 40 1 3.9545 0.3588 -0.3235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267719576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:45 Heat of formation + Delta-G solvation = -40.956557 kcal Electronic energy + Delta-G solvation = -21689.852301 eV Core-core repulsion = 18470.457950 eV Total energy + Delta-G solvation = -3219.394351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.96957 -38.80070 -37.40051 -35.98687 -32.54259 -31.72869 -30.45115 -28.77489 -28.60602 -26.36682 -25.29727 -24.39545 -22.11895 -21.38898 -20.75380 -20.16023 -18.41404 -17.06412 -16.87190 -16.20706 -15.26569 -15.15079 -14.88909 -14.51678 -14.27073 -13.96639 -13.82320 -13.68722 -13.55544 -13.29012 -12.95571 -12.49930 -12.12359 -11.70311 -11.54990 -11.38081 -11.28013 -11.19545 -11.06217 -10.88019 -10.73707 -10.49325 -10.31247 -10.29405 -9.63074 -9.43499 -8.78393 -8.34918 -8.23505 -7.29241 -6.79455 -4.08457 2.09849 2.17421 3.23128 3.27742 3.44539 3.58416 4.10099 4.29579 4.49228 4.66829 4.72812 4.98573 5.03592 5.15456 5.16401 5.21720 5.28659 5.31550 5.41142 5.49140 5.60852 5.63127 5.70822 5.77524 5.86830 5.94687 6.03915 6.05512 6.09100 6.15579 6.29324 6.57448 6.74887 6.82953 6.97980 7.08682 7.19045 7.23381 7.28903 7.53708 7.67807 8.37393 8.89370 9.57616 10.64451 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019478 B = 0.004572 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.147754 B = 6123.406777 C = 6789.316905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.084 3.916 4 H 0.071 0.929 5 C -0.153 4.153 6 C 0.029 3.971 7 N -0.508 5.508 8 C 0.099 3.901 9 C -0.221 4.221 10 C -0.057 4.057 11 C -0.228 4.228 12 C 0.160 3.840 13 O -0.201 6.201 14 C -0.472 4.472 15 H 0.084 0.916 16 C 0.011 3.989 17 N -0.880 5.880 18 Si 1.095 2.905 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.196 4.196 23 C -0.064 4.064 24 C 0.027 3.973 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.128 0.872 36 H 0.282 0.718 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.779 13.627 -4.792 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.296 6.296 3 C 0.025 3.975 4 H 0.089 0.911 5 C -0.191 4.191 6 C -0.099 4.099 7 N -0.232 5.232 8 C -0.028 4.028 9 C -0.223 4.223 10 C -0.076 4.076 11 C -0.248 4.248 12 C 0.106 3.894 13 O -0.105 6.105 14 C -0.548 4.548 15 H 0.101 0.899 16 C -0.195 4.195 17 N -0.512 5.512 18 Si 0.919 3.081 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.216 4.216 23 C -0.083 4.083 24 C -0.100 4.100 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.092 0.908 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.099 0.901 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.233 12.239 -5.053 16.735 hybrid contribution -0.555 1.120 0.625 1.398 sum -10.788 13.359 -4.428 17.733 Atomic orbital electron populations 1.22757 0.81365 1.02692 0.99651 1.87986 1.19382 1.27342 1.94852 1.23024 0.94913 0.84235 0.95291 0.91137 1.22891 0.97524 1.00636 0.98068 1.22883 0.95699 1.00319 0.91014 1.65178 1.06694 1.37170 1.14110 1.21073 0.87048 0.93286 1.01413 1.19856 1.11477 0.96717 0.94244 1.20629 0.96628 0.92327 0.97970 1.21173 1.09329 0.98096 0.96178 1.19239 0.92239 0.85704 0.92168 1.83663 1.74633 1.15711 1.36484 1.22214 1.49161 0.93499 0.89878 0.89855 1.26554 0.94310 0.97085 1.01542 1.70575 1.41941 1.37690 1.00948 0.83112 0.77089 0.74921 0.72943 1.19741 1.20683 1.20701 1.20176 1.10604 0.91882 0.98925 1.20498 0.97739 0.95517 0.94541 1.23387 0.92501 0.94878 0.99262 0.89670 0.94254 0.94185 0.90415 0.91393 0.92066 0.90735 0.90703 0.90446 0.87445 0.85429 0.90816 0.86781 0.87182 0.90072 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.88 101.05 1.10 1.43 16 2 O -0.38 -5.43 10.44 -35.23 -0.37 -5.80 16 3 C 0.08 1.08 3.51 -24.87 -0.09 1.00 16 4 H 0.07 0.80 7.88 -51.93 -0.41 0.39 16 5 C -0.15 -1.87 6.69 -25.37 -0.17 -2.04 16 6 C 0.03 0.36 6.46 -2.75 -0.02 0.34 16 7 N -0.51 -6.76 5.54 -231.89 -1.28 -8.04 16 8 C 0.10 1.35 5.69 -4.98 -0.03 1.32 16 9 C -0.22 -3.70 3.96 -104.57 -0.41 -4.11 16 10 C -0.06 -1.04 7.48 -39.61 -0.30 -1.34 16 11 C -0.23 -5.05 9.17 -39.39 -0.36 -5.41 16 12 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 13 O -0.20 -5.72 9.16 0.04 0.00 -5.72 16 14 C -0.47 -13.40 9.49 30.89 0.29 -13.10 16 15 H 0.08 2.23 5.20 -52.49 -0.27 1.96 16 16 C 0.01 0.30 5.49 -17.52 -0.10 0.20 16 17 N -0.88 -26.42 13.70 55.48 0.76 -25.66 16 18 Si 1.10 23.83 29.92 -169.99 -5.09 18.75 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 21 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 22 C -0.20 -4.15 9.99 -39.40 -0.39 -4.54 16 23 C -0.06 -1.13 8.18 -39.61 -0.32 -1.45 16 24 C 0.03 0.39 5.78 -1.90 -0.01 0.38 16 25 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.34 8.11 -51.92 -0.42 -0.08 16 28 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.84 4.86 -51.93 -0.25 0.58 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 33 H 0.08 0.99 8.08 -51.92 -0.42 0.57 16 34 H 0.11 1.72 8.05 -52.49 -0.42 1.29 16 35 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 36 H 0.28 8.66 7.97 -40.82 -0.33 8.33 16 37 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 38 H 0.11 1.63 7.16 -52.49 -0.38 1.26 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.40 4.85 -51.93 -0.25 1.15 16 LS Contribution 322.17 15.07 4.86 4.86 Total: -1.00 -31.02 322.17 -7.80 -38.83 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.62 Total: 6.49 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -1.07 Total: -23.69 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: -0.52 Total: -33.70 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.37 Total: -11.53 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.09 Total: 18.75 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.02 -7.80 -38.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267719576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.132 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds