Wall clock time and date at job start Mon Mar 30 2020 02:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00251 * 2 1 4 4 H 1.09000 * 110.64586 * 328.30506 * 3 2 1 5 5 C 1.54601 * 110.72114 * 91.45315 * 3 2 1 6 6 C 1.53990 * 105.13907 * 140.31902 * 5 3 2 7 7 N 1.47912 * 107.05929 * 1.22224 * 6 5 3 8 8 C 1.46891 * 110.99888 * 214.15800 * 7 6 5 9 9 C 1.50704 * 109.47431 * 69.87813 * 8 7 6 10 10 C 1.38299 * 119.93126 * 89.99730 * 9 8 7 11 11 C 1.38103 * 120.06649 * 180.02562 * 10 9 8 12 12 C 1.38880 * 119.92898 * 359.97438 * 11 10 9 13 13 O 1.35750 * 120.06482 * 180.02562 * 12 11 10 14 14 C 1.34833 * 117.00335 * 5.53090 * 13 12 11 15 15 H 1.07997 * 119.99574 * 354.94346 * 14 13 12 16 16 C 1.38653 * 120.00019 * 174.94064 * 14 13 12 17 17 N 1.31559 * 120.00119 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00106 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47492 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.47357 * 300.00667 * 18 16 14 21 21 H 1.48502 * 109.46837 * 59.99973 * 18 16 14 22 22 C 1.38879 * 119.86441 * 0.27433 * 12 11 10 23 23 C 1.38099 * 119.93015 * 359.45160 * 22 12 11 24 24 C 1.48534 * 105.81679 * 334.67523 * 7 6 5 25 25 H 1.08993 * 109.47221 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47107 * 300.00256 * 1 2 3 27 27 H 1.09007 * 109.46898 * 59.99961 * 1 2 3 28 28 H 1.09001 * 110.30749 * 21.39907 * 5 3 2 29 29 H 1.09001 * 110.30917 * 259.23328 * 5 3 2 30 30 H 1.08998 * 109.91975 * 241.87461 * 6 5 3 31 31 H 1.08997 * 110.08613 * 120.66956 * 6 5 3 32 32 H 1.09000 * 109.47471 * 309.87257 * 8 7 6 33 33 H 1.09011 * 109.47047 * 189.87228 * 8 7 6 34 34 H 1.07997 * 119.96906 * 359.97438 * 10 9 8 35 35 H 1.08002 * 120.03564 * 179.97438 * 11 10 9 36 36 H 0.96996 * 120.00022 * 359.97438 * 17 16 14 37 37 H 1.07995 * 120.03419 * 179.72744 * 22 12 11 38 38 H 1.07995 * 119.96912 * 180.27497 * 23 22 12 39 39 H 1.09000 * 110.66514 * 157.64112 * 24 7 6 40 40 H 1.09007 * 110.66189 * 280.76634 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3738 2.0096 -0.5359 5 6 2.2663 1.7903 1.4455 6 6 3.6255 2.5121 1.3929 7 7 4.0896 2.4615 -0.0107 8 6 5.5524 2.3458 -0.0776 9 6 5.9708 0.9795 0.4012 10 6 6.0780 -0.0645 -0.4996 11 6 6.4607 -1.3178 -0.0638 12 6 6.7384 -1.5291 1.2804 13 8 7.1153 -2.7599 1.7117 14 6 7.3120 -3.7048 0.7702 15 1 7.0906 -3.4901 -0.2648 16 6 7.7987 -4.9521 1.1308 17 7 8.0679 -5.2137 2.3917 18 14 8.0719 -6.2609 -0.1736 19 1 8.5929 -7.4958 0.4657 20 1 6.7852 -6.5601 -0.8519 21 1 9.0544 -5.7673 -1.1718 22 6 6.6248 -0.4800 2.1833 23 6 6.2472 0.7723 1.7405 24 6 3.4335 1.2720 -0.6114 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 2.3153 0.9405 2.1264 29 1 1.4829 2.4811 1.7572 30 1 4.3412 2.0038 2.0390 31 1 3.5113 3.5489 1.7090 32 1 6.0065 3.1076 0.5561 33 1 5.8813 2.4863 -1.1073 34 1 5.8615 0.1004 -1.5447 35 1 6.5439 -2.1328 -0.7676 36 1 7.9264 -4.5340 3.0690 37 1 6.8358 -0.6424 3.2299 38 1 6.1629 1.5897 2.4413 39 1 3.3883 1.3646 -1.6965 40 1 3.9545 0.3588 -0.3235 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267719576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:45 Heat of formation + Delta-G solvation = -62.695468 kcal Electronic energy + Delta-G solvation = -21690.794971 eV Core-core repulsion = 18470.457950 eV Total energy + Delta-G solvation = -3220.337021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35284 -40.28529 -38.75547 -37.36217 -34.43141 -33.10643 -32.04869 -30.08673 -29.74980 -27.31510 -27.10202 -25.81089 -23.74718 -22.81122 -21.83172 -21.43433 -20.29326 -18.73274 -18.05412 -17.30141 -17.00753 -16.44081 -16.00219 -15.76196 -15.69874 -15.53910 -15.46022 -15.05749 -14.86406 -14.70138 -14.44982 -13.89614 -13.17748 -13.03332 -12.85983 -12.69191 -12.49634 -12.40689 -12.34938 -12.31068 -12.20191 -12.01395 -11.95127 -11.48791 -11.30453 -10.77740 -10.57400 -9.86306 -9.46470 -9.05130 -8.97091 -6.27919 0.46237 0.54542 1.46481 1.58884 1.76909 2.33279 2.60564 2.78585 3.07012 3.28892 3.33508 3.66555 3.71973 3.94833 3.96981 4.05810 4.08939 4.28247 4.36776 4.44525 4.47224 4.52217 4.56439 4.66846 4.75369 4.83091 4.84847 4.88096 4.95850 4.97650 5.05481 5.12809 5.16925 5.19046 5.45187 5.57829 5.66108 5.86317 5.97964 6.00506 6.24511 6.31141 6.82974 7.58219 8.46990 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019478 B = 0.004572 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.147754 B = 6123.406777 C = 6789.316905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.083 3.917 4 H 0.092 0.908 5 C -0.152 4.152 6 C 0.025 3.975 7 N -0.497 5.497 8 C 0.100 3.900 9 C -0.189 4.189 10 C -0.053 4.053 11 C -0.241 4.241 12 C 0.117 3.883 13 O -0.252 6.252 14 C -0.488 4.488 15 H 0.090 0.910 16 C -0.044 4.044 17 N -0.916 5.916 18 Si 1.145 2.855 19 H -0.272 1.272 20 H -0.261 1.261 21 H -0.259 1.259 22 C -0.207 4.207 23 C -0.056 4.056 24 C 0.023 3.977 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.259 0.741 37 H 0.113 0.887 38 H 0.149 0.851 39 H 0.093 0.907 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.240 16.931 -6.647 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C 0.024 3.976 4 H 0.110 0.890 5 C -0.190 4.190 6 C -0.102 4.102 7 N -0.220 5.220 8 C -0.028 4.028 9 C -0.192 4.192 10 C -0.071 4.071 11 C -0.261 4.261 12 C 0.067 3.933 13 O -0.160 6.160 14 C -0.564 4.564 15 H 0.107 0.893 16 C -0.240 4.240 17 N -0.550 5.550 18 Si 0.960 3.040 19 H -0.196 1.196 20 H -0.186 1.186 21 H -0.184 1.184 22 C -0.226 4.226 23 C -0.075 4.075 24 C -0.105 4.105 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.155 0.845 35 H 0.132 0.868 36 H 0.068 0.932 37 H 0.131 0.869 38 H 0.166 0.834 39 H 0.111 0.889 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.727 15.620 -6.924 20.723 hybrid contribution -0.291 0.501 1.159 1.296 sum -12.018 16.122 -5.764 20.918 Atomic orbital electron populations 1.22947 0.79442 1.03510 1.01084 1.87942 1.21672 1.28484 1.95077 1.23113 0.94501 0.84222 0.95715 0.88990 1.22893 0.98405 1.00368 0.97337 1.23006 0.95349 1.01693 0.90194 1.65233 1.06034 1.36196 1.14541 1.21262 0.87440 0.91118 1.02953 1.20419 1.07107 0.98156 0.93478 1.20961 0.95243 0.91045 0.99888 1.21260 1.10114 0.99544 0.95135 1.19831 0.93903 0.85502 0.94022 1.83641 1.77800 1.17345 1.37207 1.22575 1.49265 0.94176 0.90397 0.89294 1.28408 0.93354 0.99469 1.02735 1.70714 1.45644 1.37027 1.01661 0.82600 0.78385 0.72161 0.70875 1.19623 1.18566 1.18376 1.20468 1.10789 0.92643 0.98710 1.20939 0.95818 0.94881 0.95825 1.23402 0.93301 0.93559 1.00211 0.89344 0.93089 0.92376 0.92649 0.88871 0.93335 0.88185 0.88304 0.88699 0.84498 0.86758 0.93228 0.86922 0.83372 0.88900 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.88 113.37 1.23 1.72 16 2 O -0.41 -11.29 10.44 -148.98 -1.56 -12.85 16 3 C 0.08 1.90 3.51 31.80 0.11 2.02 16 4 H 0.09 1.71 7.88 -2.39 -0.02 1.69 16 5 C -0.15 -3.26 6.69 31.47 0.21 -3.05 16 6 C 0.03 0.53 6.46 86.44 0.56 1.09 16 7 N -0.50 -11.01 5.54 -887.56 -4.91 -15.92 16 8 C 0.10 2.22 5.69 85.56 0.49 2.71 16 9 C -0.19 -5.78 3.96 -19.83 -0.08 -5.86 16 10 C -0.05 -1.85 7.48 22.25 0.17 -1.68 16 11 C -0.24 -10.92 9.17 22.39 0.21 -10.71 16 12 C 0.12 6.00 6.65 22.58 0.15 6.15 16 13 O -0.25 -15.43 9.16 -22.77 -0.21 -15.63 16 14 C -0.49 -29.36 9.49 67.92 0.64 -28.71 16 15 H 0.09 5.01 5.20 -2.91 -0.02 5.00 16 16 C -0.04 -2.56 5.49 84.83 0.47 -2.09 16 17 N -0.92 -58.36 13.70 21.61 0.30 -58.06 16 18 Si 1.14 49.09 29.92 68.60 2.05 51.14 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 21 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 22 C -0.21 -8.89 9.99 22.39 0.22 -8.66 16 23 C -0.06 -1.86 8.18 22.25 0.18 -1.68 16 24 C 0.02 0.59 5.78 86.65 0.50 1.09 16 25 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.84 8.11 -2.38 -0.02 0.83 16 28 H 0.05 1.44 8.07 -2.39 -0.02 1.42 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.14 4.86 -2.39 -0.01 1.13 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.10 1.85 8.02 -2.39 -0.02 1.83 16 33 H 0.09 1.90 8.08 -2.38 -0.02 1.88 16 34 H 0.14 3.98 8.05 -2.91 -0.02 3.96 16 35 H 0.11 5.38 5.64 -2.91 -0.02 5.36 16 36 H 0.26 17.24 7.97 -92.71 -0.74 16.50 16 37 H 0.11 4.76 8.06 -2.91 -0.02 4.73 16 38 H 0.15 3.81 7.16 -2.91 -0.02 3.79 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.05 1.58 4.85 -2.38 -0.01 1.56 16 Total: -1.00 -73.25 322.17 1.80 -71.46 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 1.07 Total: 27.56 kcal Atomic # 6 Polarization: -52.75 SS G_CDS: 5.06 Total: -47.69 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -4.62 Total: -73.98 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -1.76 Total: -28.48 kcal Atomic # 14 Polarization: 49.09 SS G_CDS: 2.05 Total: 51.14 kcal Total: -73.25 1.80 -71.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267719576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.761 kcal (2) G-P(sol) polarization free energy of solvation -73.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds