Wall clock time and date at job start Mon Mar 30 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 117.00095 * 2 1 4 4 C 1.38796 * 120.02525 * 0.02562 * 3 2 1 5 5 C 1.38154 * 120.05311 * 179.97438 * 4 3 2 6 6 C 1.38195 * 120.11045 * 359.97438 * 5 4 3 7 7 C 1.38758 * 120.05161 * 0.02562 * 6 5 4 8 8 O 1.35905 * 120.02357 * 180.27706 * 7 6 5 9 9 C 1.42900 * 117.00046 * 359.71755 * 8 7 6 10 10 C 1.53001 * 109.46950 * 180.02562 * 9 8 7 11 11 N 1.46505 * 109.46888 * 65.00043 * 10 9 8 12 12 C 1.36932 * 120.00076 * 269.99947 * 11 10 9 13 13 H 1.07996 * 120.00230 * 140.81144 * 12 11 10 14 14 C 1.38813 * 119.99734 * 320.80672 * 12 11 10 15 15 N 1.31623 * 119.99741 * 156.93189 * 14 12 11 16 16 Si 1.86797 * 120.00316 * 336.93013 * 14 12 11 17 17 H 1.48493 * 109.47280 * 91.95144 * 16 14 12 18 18 H 1.48499 * 109.47213 * 211.95486 * 16 14 12 19 19 H 1.48503 * 109.46977 * 331.94934 * 16 14 12 20 20 C 1.46503 * 119.99601 * 90.00260 * 11 10 9 21 21 C 1.53001 * 117.49360 * 183.90533 * 20 11 10 22 22 C 1.52999 * 117.49810 * 115.28450 * 20 11 10 23 23 C 1.38606 * 120.02514 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47530 * 299.99871 * 1 2 3 25 25 H 1.09005 * 109.47023 * 60.00103 * 1 2 3 26 26 H 1.08999 * 109.47305 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.97463 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.94416 * 180.02562 * 5 4 3 29 29 H 1.07997 * 119.97365 * 179.97438 * 6 5 4 30 30 H 1.08997 * 109.47045 * 300.00382 * 9 8 7 31 31 H 1.08999 * 109.46966 * 60.00254 * 9 8 7 32 32 H 1.09003 * 109.47062 * 184.99765 * 10 9 8 33 33 H 1.08995 * 109.47154 * 305.00384 * 10 9 8 34 34 H 0.97002 * 119.99940 * 180.02562 * 15 14 12 35 35 H 1.08996 * 115.55192 * 329.60763 * 20 11 10 36 36 H 1.08995 * 117.50185 * 359.97438 * 21 20 11 37 37 H 1.09002 * 117.49752 * 145.01794 * 21 20 11 38 38 H 1.09005 * 117.49713 * 214.97407 * 22 20 11 39 39 H 1.08996 * 117.49949 * 359.96926 * 22 20 11 40 40 H 1.08001 * 120.05856 * 0.04170 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9172 3.6065 0.0011 6 6 3.2971 3.6821 0.0016 7 6 4.0566 2.5209 0.0011 8 8 5.4136 2.5959 0.0073 9 6 5.9911 3.9031 0.0079 10 6 7.5166 3.7866 0.0146 11 7 7.9644 3.1656 -1.2345 12 6 8.0897 1.8045 -1.3160 13 1 7.7955 1.2881 -2.2177 14 6 8.5950 1.0884 -0.2395 15 7 8.3116 -0.1903 -0.1084 16 14 9.6771 1.9393 1.0231 17 1 8.8339 2.4522 2.1325 18 1 10.6665 0.9709 1.5603 19 1 10.3915 3.0714 0.3802 20 6 8.2781 4.0010 -2.3964 21 6 8.6521 3.2890 -3.6980 22 6 9.7275 4.0141 -2.8864 23 6 3.4301 1.2840 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2120 2.3187 0.0005 28 1 1.3277 4.5114 0.0019 29 1 3.7846 4.6458 0.0016 30 1 5.6720 4.4416 -0.8844 31 1 5.6638 4.4444 0.8955 32 1 7.9565 4.7799 0.1046 33 1 7.8304 3.1723 0.8585 34 1 8.6643 -0.6906 0.6440 35 1 7.7120 4.9291 -2.4748 36 1 8.6651 2.1991 -3.6897 37 1 8.3318 3.7486 -4.6330 38 1 10.1147 4.9507 -3.2875 39 1 10.4477 3.4015 -2.3440 40 1 4.0196 0.3791 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269865398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:09 Heat of formation + Delta-G solvation = 12.888262 kcal Electronic energy + Delta-G solvation = -21651.027487 eV Core-core repulsion = 18433.968022 eV Total energy + Delta-G solvation = -3217.059465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.06523 -38.68546 -37.20639 -35.99228 -33.55689 -31.56787 -30.61147 -29.16397 -28.16859 -27.09292 -24.25253 -23.00945 -22.16579 -21.48860 -20.97492 -19.58477 -18.40577 -16.62540 -16.24016 -15.94807 -15.82606 -15.64167 -15.48368 -15.19240 -14.60738 -14.22177 -13.67988 -13.35071 -12.79023 -12.69008 -12.66067 -12.17557 -12.09572 -12.04340 -11.79681 -11.31947 -11.12416 -10.84424 -10.78419 -10.49448 -10.44152 -10.28778 -9.98657 -9.72587 -9.42401 -9.40917 -8.41522 -8.15267 -7.75256 -6.70388 -5.92656 -3.35352 1.66174 1.75566 3.21148 3.31595 3.48331 3.52790 4.05570 4.07457 4.55619 4.75075 4.86822 4.92031 5.10751 5.12673 5.21967 5.35839 5.39963 5.43241 5.44926 5.68982 5.74290 5.77883 5.81545 5.88545 6.01940 6.05045 6.15705 6.32211 6.43514 6.48046 6.50346 6.56651 6.63691 6.69989 6.85959 6.93579 7.13687 7.57286 8.03991 8.12985 8.47457 9.00997 9.76005 10.12459 11.22388 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.005086 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.419015 B = 5503.559239 C = 5992.584699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.315 6.315 3 C 0.161 3.839 4 C -0.260 4.260 5 C -0.046 4.046 6 C -0.254 4.254 7 C 0.183 3.817 8 O -0.263 6.263 9 C 0.045 3.955 10 C 0.133 3.867 11 N -0.567 5.567 12 C -0.258 4.258 13 H 0.080 0.920 14 C 0.047 3.953 15 N -0.890 5.890 16 Si 0.866 3.134 17 H -0.284 1.284 18 H -0.301 1.301 19 H -0.268 1.268 20 C 0.117 3.883 21 C -0.187 4.187 22 C -0.223 4.223 23 C -0.187 4.187 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.097 0.903 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.262 0.738 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.454 8.128 0.339 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.228 6.228 3 C 0.116 3.884 4 C -0.279 4.279 5 C -0.065 4.065 6 C -0.273 4.273 7 C 0.135 3.865 8 O -0.173 6.173 9 C -0.034 4.034 10 C 0.007 3.993 11 N -0.285 5.285 12 C -0.387 4.387 13 H 0.098 0.902 14 C -0.155 4.155 15 N -0.530 5.530 16 Si 0.696 3.304 17 H -0.213 1.213 18 H -0.229 1.229 19 H -0.193 1.193 20 C 0.009 3.991 21 C -0.225 4.225 22 C -0.264 4.264 23 C -0.206 4.206 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.115 0.885 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.143 0.857 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.190 7.587 0.449 14.366 hybrid contribution 0.310 0.754 0.744 1.103 sum -11.880 8.341 1.193 14.565 Atomic orbital electron populations 1.23006 0.78781 1.03574 1.01147 1.86086 1.20996 1.27110 1.88637 1.18572 0.91417 0.83886 0.94566 1.20958 0.99440 0.92328 1.15193 1.20578 0.93762 0.96679 0.95432 1.21172 0.94673 0.97733 1.13713 1.18867 0.84277 0.92721 0.90621 1.86529 1.14637 1.30287 1.85882 1.23734 0.97483 0.82841 0.99292 1.21425 0.89218 0.97495 0.91137 1.43627 1.74084 1.03402 1.07437 1.18564 1.37486 0.79468 1.03137 0.90221 1.25413 0.97540 0.94834 0.97686 1.69878 1.44027 1.08463 1.30631 0.87148 0.81865 0.79550 0.81866 1.21253 1.22861 1.19279 1.21179 0.94029 0.94823 0.89111 1.23047 1.04277 1.01098 0.94057 1.23375 0.95414 1.01220 1.06403 1.19578 0.91166 0.97725 1.12112 0.92852 0.92807 0.88490 0.86032 0.86191 0.85697 0.92706 0.93495 0.91682 0.91246 0.92799 0.89273 0.87822 0.90570 0.90902 0.89257 0.83961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.83 10.49 -19.42 -0.20 -5.03 16 3 C 0.16 2.66 6.68 -39.24 -0.26 2.40 16 4 C -0.26 -3.64 9.04 -39.41 -0.36 -4.00 16 5 C -0.05 -0.64 10.04 -39.63 -0.40 -1.03 16 6 C -0.25 -4.04 9.04 -39.40 -0.36 -4.39 16 7 C 0.18 3.55 6.68 -39.23 -0.26 3.29 16 8 O -0.26 -5.82 9.61 -19.44 -0.19 -6.00 16 9 C 0.04 0.82 5.08 37.16 0.19 1.01 16 10 C 0.13 2.77 4.99 -4.04 -0.02 2.75 16 11 N -0.57 -13.14 2.36 -165.66 -0.39 -13.53 16 12 C -0.26 -7.07 8.43 -15.06 -0.13 -7.20 16 13 H 0.08 2.40 6.86 -52.49 -0.36 2.04 16 14 C 0.05 1.33 5.28 -17.43 -0.09 1.24 16 15 N -0.89 -27.15 13.97 55.49 0.78 -26.38 16 16 Si 0.87 21.91 25.31 -169.99 -4.30 17.61 16 17 H -0.28 -6.98 6.51 56.52 0.37 -6.62 16 18 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 20 C 0.12 2.32 6.57 -67.93 -0.45 1.88 16 21 C -0.19 -3.58 9.80 -26.73 -0.26 -3.84 16 22 C -0.22 -4.23 10.35 -26.73 -0.28 -4.51 16 23 C -0.19 -3.62 9.93 -39.29 -0.39 -4.01 16 24 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 25 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 26 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.12 1.34 6.29 -52.48 -0.33 1.01 16 28 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.13 1.75 6.29 -52.49 -0.33 1.42 16 30 H 0.05 0.94 7.67 -51.93 -0.40 0.54 16 31 H 0.05 0.74 7.65 -51.93 -0.40 0.34 16 32 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 33 H 0.07 1.62 3.45 -51.93 -0.18 1.44 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.10 2.27 6.45 -51.93 -0.33 1.93 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 40 H 0.14 3.01 8.06 -52.49 -0.42 2.59 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -31.84 327.37 -7.12 -38.95 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.67 Total: 4.57 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -2.07 Total: -15.12 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: 0.38 Total: -39.90 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.39 Total: -11.04 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.30 Total: 17.61 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.84 -7.12 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269865398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.841 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds