Wall clock time and date at job start Mon Mar 30 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35898 * 117.00095 * 2 1 4 4 C 1.38796 * 120.02525 * 0.02562 * 3 2 1 5 5 C 1.38154 * 120.05311 * 179.97438 * 4 3 2 6 6 C 1.38195 * 120.11045 * 359.97438 * 5 4 3 7 7 C 1.38758 * 120.05161 * 0.02562 * 6 5 4 8 8 O 1.35905 * 120.02357 * 180.27706 * 7 6 5 9 9 C 1.42900 * 117.00046 * 359.71755 * 8 7 6 10 10 C 1.53001 * 109.46950 * 180.02562 * 9 8 7 11 11 N 1.46505 * 109.46888 * 65.00043 * 10 9 8 12 12 C 1.36932 * 120.00076 * 269.99947 * 11 10 9 13 13 H 1.07996 * 120.00230 * 140.81144 * 12 11 10 14 14 C 1.38813 * 119.99734 * 320.80672 * 12 11 10 15 15 N 1.31623 * 119.99741 * 156.93189 * 14 12 11 16 16 Si 1.86797 * 120.00316 * 336.93013 * 14 12 11 17 17 H 1.48493 * 109.47280 * 91.95144 * 16 14 12 18 18 H 1.48499 * 109.47213 * 211.95486 * 16 14 12 19 19 H 1.48503 * 109.46977 * 331.94934 * 16 14 12 20 20 C 1.46503 * 119.99601 * 90.00260 * 11 10 9 21 21 C 1.53001 * 117.49360 * 183.90533 * 20 11 10 22 22 C 1.52999 * 117.49810 * 115.28450 * 20 11 10 23 23 C 1.38606 * 120.02514 * 180.02562 * 3 2 1 24 24 H 1.09001 * 109.47530 * 299.99871 * 1 2 3 25 25 H 1.09005 * 109.47023 * 60.00103 * 1 2 3 26 26 H 1.08999 * 109.47305 * 179.97438 * 1 2 3 27 27 H 1.08003 * 119.97463 * 359.97438 * 4 3 2 28 28 H 1.08001 * 119.94416 * 180.02562 * 5 4 3 29 29 H 1.07997 * 119.97365 * 179.97438 * 6 5 4 30 30 H 1.08997 * 109.47045 * 300.00382 * 9 8 7 31 31 H 1.08999 * 109.46966 * 60.00254 * 9 8 7 32 32 H 1.09003 * 109.47062 * 184.99765 * 10 9 8 33 33 H 1.08995 * 109.47154 * 305.00384 * 10 9 8 34 34 H 0.97002 * 119.99940 * 180.02562 * 15 14 12 35 35 H 1.08996 * 115.55192 * 329.60763 * 20 11 10 36 36 H 1.08995 * 117.50185 * 359.97438 * 21 20 11 37 37 H 1.09002 * 117.49752 * 145.01794 * 21 20 11 38 38 H 1.09005 * 117.49713 * 214.97407 * 22 20 11 39 39 H 1.08996 * 117.49949 * 359.96926 * 22 20 11 40 40 H 1.08001 * 120.05856 * 0.04170 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9172 3.6065 0.0011 6 6 3.2971 3.6821 0.0016 7 6 4.0566 2.5209 0.0011 8 8 5.4136 2.5959 0.0073 9 6 5.9911 3.9031 0.0079 10 6 7.5166 3.7866 0.0146 11 7 7.9644 3.1656 -1.2345 12 6 8.0897 1.8045 -1.3160 13 1 7.7955 1.2881 -2.2177 14 6 8.5950 1.0884 -0.2395 15 7 8.3116 -0.1903 -0.1084 16 14 9.6771 1.9393 1.0231 17 1 8.8339 2.4522 2.1325 18 1 10.6665 0.9709 1.5603 19 1 10.3915 3.0714 0.3802 20 6 8.2781 4.0010 -2.3964 21 6 8.6521 3.2890 -3.6980 22 6 9.7275 4.0141 -2.8864 23 6 3.4301 1.2840 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2120 2.3187 0.0005 28 1 1.3277 4.5114 0.0019 29 1 3.7846 4.6458 0.0016 30 1 5.6720 4.4416 -0.8844 31 1 5.6638 4.4444 0.8955 32 1 7.9565 4.7799 0.1046 33 1 7.8304 3.1723 0.8585 34 1 8.6643 -0.6906 0.6440 35 1 7.7120 4.9291 -2.4748 36 1 8.6651 2.1991 -3.6897 37 1 8.3318 3.7486 -4.6330 38 1 10.1147 4.9507 -3.2875 39 1 10.4477 3.4015 -2.3440 40 1 4.0196 0.3791 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269865398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:09 Heat of formation + Delta-G solvation = -7.892179 kcal Electronic energy + Delta-G solvation = -21651.928595 eV Core-core repulsion = 18433.968022 eV Total energy + Delta-G solvation = -3217.960572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31002 -40.01531 -38.82072 -37.27697 -35.29474 -33.53859 -31.89989 -30.49468 -29.69638 -28.06145 -26.18297 -24.45783 -23.47832 -22.99220 -22.31120 -21.34701 -19.66680 -18.48340 -17.61224 -17.37506 -17.19884 -16.97401 -16.77591 -16.69062 -16.15439 -15.51642 -15.39032 -14.66392 -14.49575 -14.23587 -14.11697 -13.85953 -13.48213 -13.35267 -12.98436 -12.71095 -12.60732 -12.45858 -12.25513 -12.12244 -11.82290 -11.79872 -11.57936 -11.47140 -11.21736 -10.94339 -10.53717 -9.45521 -9.00780 -8.59009 -8.12956 -5.51295 0.42664 0.50997 1.28194 1.39276 1.50013 2.07891 2.44794 2.80312 2.82135 3.01279 3.24237 3.39408 3.86130 4.12252 4.15447 4.21231 4.23982 4.30439 4.34196 4.40991 4.42225 4.44317 4.46473 4.52717 4.60455 4.65739 4.73102 4.95116 4.96557 4.99488 5.05136 5.28807 5.33303 5.38144 5.49374 5.55839 5.66863 6.00051 6.26232 6.46404 6.71555 7.04980 7.68757 8.06841 9.06966 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.005086 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.419015 B = 5503.559239 C = 5992.584699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.344 6.344 3 C 0.158 3.842 4 C -0.249 4.249 5 C -0.033 4.033 6 C -0.252 4.252 7 C 0.156 3.844 8 O -0.313 6.313 9 C 0.045 3.955 10 C 0.124 3.876 11 N -0.582 5.582 12 C -0.231 4.231 13 H 0.032 0.968 14 C -0.016 4.016 15 N -0.948 5.948 16 Si 0.934 3.066 17 H -0.272 1.272 18 H -0.314 1.314 19 H -0.253 1.253 20 C 0.105 3.895 21 C -0.192 4.192 22 C -0.209 4.209 23 C -0.231 4.231 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.116 0.884 27 H 0.161 0.839 28 H 0.168 0.832 29 H 0.149 0.851 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.040 0.960 34 H 0.257 0.743 35 H 0.132 0.868 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.058 0.942 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.598 12.649 0.399 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.258 6.258 3 C 0.112 3.888 4 C -0.268 4.268 5 C -0.051 4.051 6 C -0.271 4.271 7 C 0.109 3.891 8 O -0.226 6.226 9 C -0.032 4.032 10 C 0.000 4.000 11 N -0.301 5.301 12 C -0.361 4.361 13 H 0.050 0.950 14 C -0.212 4.212 15 N -0.592 5.592 16 Si 0.762 3.238 17 H -0.200 1.200 18 H -0.243 1.243 19 H -0.176 1.176 20 C -0.002 4.002 21 C -0.231 4.231 22 C -0.249 4.249 23 C -0.251 4.251 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.135 0.865 27 H 0.178 0.822 28 H 0.185 0.815 29 H 0.166 0.834 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.149 0.851 36 H 0.080 0.920 37 H 0.129 0.871 38 H 0.132 0.868 39 H 0.076 0.924 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.350 12.162 0.500 18.818 hybrid contribution 0.788 -0.674 0.608 1.202 sum -13.563 11.488 1.108 17.809 Atomic orbital electron populations 1.23403 0.75780 1.05612 1.02748 1.86058 1.24148 1.27123 1.88435 1.18658 0.90481 0.85477 0.94143 1.21395 1.01180 0.91211 1.12979 1.21141 0.93099 0.98263 0.92587 1.21425 0.95629 0.97038 1.13010 1.19087 0.83562 0.93903 0.92529 1.86444 1.16647 1.32565 1.86937 1.23732 0.95695 0.82108 1.01628 1.21594 0.91169 0.98597 0.88687 1.43711 1.74913 1.02087 1.09422 1.18270 1.35013 0.81836 1.00954 0.95011 1.26016 0.99389 0.95341 1.00425 1.70040 1.46515 1.10562 1.32054 0.86040 0.79589 0.78346 0.79783 1.19958 1.24283 1.17638 1.21563 0.95272 0.95701 0.87641 1.23014 1.05255 0.99012 0.95771 1.23345 0.94123 1.02102 1.05345 1.19564 0.92863 0.96732 1.15933 0.91021 0.91166 0.86548 0.82169 0.81472 0.83370 0.90944 0.90206 0.87461 0.94187 0.93370 0.85093 0.91985 0.87060 0.86790 0.92351 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.34 -10.65 10.49 -92.41 -0.97 -11.62 16 3 C 0.16 5.27 6.68 22.49 0.15 5.42 16 4 C -0.25 -6.16 9.04 22.38 0.20 -5.95 16 5 C -0.03 -0.77 10.04 22.24 0.22 -0.54 16 6 C -0.25 -7.38 9.04 22.38 0.20 -7.18 16 7 C 0.16 6.21 6.68 22.49 0.15 6.36 16 8 O -0.31 -14.37 9.61 -92.48 -0.89 -15.26 16 9 C 0.05 1.60 5.08 71.98 0.37 1.96 16 10 C 0.12 4.95 4.99 86.38 0.43 5.38 16 11 N -0.58 -26.80 2.36 -678.03 -1.60 -28.40 16 12 C -0.23 -13.31 8.43 84.03 0.71 -12.60 16 13 H 0.03 2.11 6.86 -2.91 -0.02 2.09 16 14 C -0.02 -0.94 5.28 84.86 0.45 -0.50 16 15 N -0.95 -62.28 13.97 21.65 0.30 -61.97 16 16 Si 0.93 47.18 25.31 68.60 1.74 48.92 16 17 H -0.27 -13.07 6.51 99.48 0.65 -12.42 16 18 H -0.31 -16.33 7.11 99.48 0.71 -15.62 16 19 H -0.25 -11.94 7.11 99.48 0.71 -11.23 16 20 C 0.11 3.94 6.57 44.99 0.30 4.24 16 21 C -0.19 -7.24 9.80 30.60 0.30 -6.94 16 22 C -0.21 -7.42 10.35 30.59 0.32 -7.10 16 23 C -0.23 -9.69 9.93 22.46 0.22 -9.46 16 24 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 25 H 0.07 1.01 7.66 -2.38 -0.02 0.99 16 26 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.16 2.68 6.29 -2.91 -0.02 2.66 16 28 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 29 H 0.15 3.54 6.29 -2.91 -0.02 3.52 16 30 H 0.07 2.25 7.67 -2.39 -0.02 2.24 16 31 H 0.08 2.25 7.65 -2.39 -0.02 2.23 16 32 H 0.11 3.32 8.07 -2.39 -0.02 3.30 16 33 H 0.04 1.84 3.45 -2.39 -0.01 1.83 16 34 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 35 H 0.13 3.85 8.14 -2.39 -0.02 3.83 16 36 H 0.06 2.86 6.45 -2.39 -0.02 2.85 16 37 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16 39 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -78.33 327.37 4.69 -73.65 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.97 Total: 20.17 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 5.13 Total: -25.48 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -1.30 Total: -90.37 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -1.86 Total: -26.88 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 1.74 Total: 48.92 kcal Total: -78.33 4.69 -73.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269865398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.756 kcal (2) G-P(sol) polarization free energy of solvation -78.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds