Wall clock time and date at job start Mon Mar 30 2020 01:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42893 * 113.99994 * 2 1 4 4 C 1.53000 * 109.47307 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47414 * 180.02562 * 4 3 2 6 6 N 1.46503 * 109.47161 * 179.97438 * 5 4 3 7 7 C 1.46494 * 120.00427 * 270.00345 * 6 5 4 8 8 C 1.34775 * 119.99205 * 90.00491 * 6 5 4 9 9 O 1.21586 * 120.00721 * 354.93305 * 8 6 5 10 10 C 1.47643 * 119.99502 * 174.94024 * 8 6 5 11 11 C 1.40017 * 119.89552 * 334.89372 * 10 8 6 12 12 C 1.36320 * 120.10701 * 180.25981 * 11 10 8 13 13 C 1.40885 * 119.88918 * 359.45657 * 12 11 10 14 14 C 1.41112 * 120.10577 * 180.29985 * 13 12 11 15 15 H 1.07994 * 120.00646 * 154.50588 * 14 13 12 16 16 C 1.40228 * 119.99391 * 334.50973 * 14 13 12 17 17 N 1.30649 * 120.00151 * 343.25804 * 16 14 13 18 18 Si 1.86802 * 119.99993 * 163.26506 * 16 14 13 19 19 H 1.48499 * 109.47407 * 59.99552 * 18 16 14 20 20 H 1.48499 * 109.47322 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.46954 * 299.99759 * 18 16 14 22 22 C 1.40894 * 119.79516 * 0.27292 * 13 12 11 23 23 C 1.36316 * 119.89000 * 0.02562 * 22 13 12 24 24 H 1.08997 * 109.46873 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46956 * 299.99220 * 1 2 3 26 26 H 1.09000 * 109.47605 * 59.99725 * 1 2 3 27 27 H 1.09006 * 109.46923 * 60.00711 * 3 2 1 28 28 H 1.08998 * 109.47564 * 300.00775 * 3 2 1 29 29 H 1.08999 * 109.46958 * 60.00079 * 4 3 2 30 30 H 1.09005 * 109.46738 * 300.00427 * 4 3 2 31 31 H 1.09006 * 109.47045 * 60.00382 * 5 4 3 32 32 H 1.08998 * 109.47335 * 300.00512 * 5 4 3 33 33 H 1.09007 * 109.47078 * 275.90610 * 7 6 5 34 34 H 1.09001 * 109.47154 * 35.89671 * 7 6 5 35 35 H 1.08993 * 109.47316 * 155.89953 * 7 6 5 36 36 H 1.07995 * 119.94675 * 359.97438 * 11 10 8 37 37 H 1.07995 * 120.05476 * 179.73026 * 12 11 10 38 38 H 0.97000 * 119.99635 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.05168 * 180.02562 * 22 13 12 40 40 H 1.07999 * 119.94119 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4667 0.0000 7 6 6.3485 2.4082 1.2686 8 6 6.2899 2.4141 -1.1673 9 8 5.6801 2.3697 -2.2182 10 6 7.7663 2.4102 -1.1698 11 6 8.4675 2.9708 -0.0953 12 6 9.8307 2.9744 -0.0956 13 6 10.5340 2.4025 -1.1741 14 6 11.9451 2.3980 -1.1762 15 1 12.4819 1.6459 -1.7350 16 6 12.6502 3.3702 -0.4523 17 7 12.0425 4.4552 -0.0520 18 14 14.4587 3.1141 -0.0606 19 1 15.2254 2.9822 -1.3256 20 1 14.9682 4.2776 0.7087 21 1 14.6200 1.8783 0.7470 22 6 9.8240 1.8345 -2.2504 23 6 8.4609 1.8411 -2.2440 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.6887 1.8463 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 3.8567 0.6439 -0.8909 30 1 3.8574 0.6435 0.8891 31 1 3.8365 3.1227 0.8905 32 1 3.8358 3.1239 -0.8894 33 1 6.5190 3.4199 1.6367 34 1 5.7633 1.8497 1.9993 35 1 7.3062 1.9115 1.1140 36 1 7.9275 3.4053 0.7329 37 1 10.3706 3.4109 0.7316 38 1 12.5302 5.1275 0.4490 39 1 10.3589 1.3945 -3.0791 40 1 7.9158 1.4056 -3.0684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270293046.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:28 Heat of formation + Delta-G solvation = -55.854121 kcal Electronic energy + Delta-G solvation = -20849.619978 eV Core-core repulsion = 17629.579620 eV Total energy + Delta-G solvation = -3220.040358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.52618 -38.06877 -37.15030 -35.36055 -33.93960 -32.55666 -30.09359 -29.49994 -27.50211 -26.46802 -26.04096 -24.49701 -22.08137 -21.08898 -20.96718 -18.87149 -17.50921 -16.61310 -16.57816 -16.01417 -15.84983 -15.40011 -15.03651 -14.58579 -14.24691 -14.01323 -13.55665 -13.14942 -12.90133 -12.57983 -12.33487 -12.15388 -12.12444 -11.95936 -11.77991 -11.45812 -11.34899 -11.21536 -11.16354 -10.86282 -10.75743 -10.56847 -10.02532 -9.81492 -9.47461 -9.33933 -8.90502 -8.26756 -7.64507 -7.51288 -7.00183 -4.58515 2.27686 2.93947 2.95268 2.99105 3.03071 3.34321 3.75265 3.79768 3.85043 4.52995 4.87361 4.97357 5.11353 5.21801 5.24248 5.30518 5.38429 5.45126 5.49403 5.54241 5.66439 5.78294 5.84644 6.09963 6.15171 6.21631 6.29194 6.32128 6.79089 6.84798 6.93214 7.01667 7.09551 7.15149 7.46032 7.62169 7.81113 7.87723 8.06204 8.11370 8.42115 8.65564 8.77396 9.00834 9.92059 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.044275 B = 0.003117 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.262805 B = 8980.384328 C = 9234.038735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.066 3.934 4 C -0.134 4.134 5 C 0.124 3.876 6 N -0.624 5.624 7 C 0.074 3.926 8 C 0.573 3.427 9 O -0.569 6.569 10 C -0.282 4.282 11 C -0.080 4.080 12 C -0.179 4.179 13 C 0.128 3.872 14 C -0.446 4.446 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.775 5.775 18 Si 0.914 3.086 19 H -0.263 1.263 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.238 4.238 23 C -0.025 4.025 24 H 0.084 0.916 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.097 0.903 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.905 -2.333 5.964 13.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.011 4.011 4 C -0.173 4.173 5 C 0.001 3.999 6 N -0.357 5.357 7 C -0.069 4.069 8 C 0.369 3.631 9 O -0.450 6.450 10 C -0.286 4.286 11 C -0.099 4.099 12 C -0.199 4.199 13 C 0.125 3.875 14 C -0.473 4.473 15 H 0.101 0.899 16 C -0.146 4.146 17 N -0.398 5.398 18 Si 0.737 3.263 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.257 4.257 23 C -0.044 4.044 24 H 0.102 0.898 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.063 -2.269 5.542 13.467 hybrid contribution 0.563 0.312 0.293 0.707 sum -11.500 -1.957 5.835 13.043 Atomic orbital electron populations 1.22724 0.81275 1.02617 0.99866 1.87894 1.19508 1.28324 1.95403 1.22465 0.94148 0.84474 1.00062 1.21903 0.92540 0.98936 1.03941 1.21125 0.80681 0.95585 1.02529 1.47655 1.05636 1.75591 1.06848 1.22334 0.98647 1.01008 0.84903 1.18752 0.88306 0.73984 0.82074 1.90635 1.70654 1.52305 1.31408 1.18860 0.89790 1.18655 1.01306 1.21160 0.95014 0.97537 0.96139 1.21011 0.92437 1.06435 0.99985 1.17794 0.93275 0.87141 0.89275 1.19793 0.91678 1.10978 1.24896 0.89859 1.26082 1.01571 0.93794 0.93189 1.69737 1.39119 1.05187 1.25770 0.86268 0.81118 0.79149 0.79745 1.18712 1.20095 1.18514 1.20712 0.93131 1.11997 0.99877 1.20319 0.93913 0.95183 0.94969 0.89757 0.94212 0.94104 0.93404 0.93100 0.90424 0.91207 0.91153 0.90162 0.92844 0.92748 0.88370 0.87241 0.86196 0.90248 0.88443 0.88478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.96 10.70 -35.23 -0.38 -5.34 16 3 C 0.07 0.75 5.94 37.16 0.22 0.97 16 4 C -0.13 -1.81 5.91 -26.73 -0.16 -1.97 16 5 C 0.12 1.74 5.40 -4.04 -0.02 1.72 16 6 N -0.62 -10.66 2.87 -182.77 -0.53 -11.18 16 7 C 0.07 1.06 8.69 59.84 0.52 1.58 16 8 C 0.57 12.37 7.47 -12.42 -0.09 12.27 16 9 O -0.57 -13.70 16.23 5.29 0.09 -13.62 16 10 C -0.28 -6.47 5.50 -104.73 -0.58 -7.05 16 11 C -0.08 -1.76 7.44 -39.61 -0.29 -2.05 16 12 C -0.18 -4.36 8.63 -39.27 -0.34 -4.70 16 13 C 0.13 3.27 5.57 -106.80 -0.59 2.67 16 14 C -0.45 -11.11 9.05 -37.74 -0.34 -11.45 16 15 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 16 C 0.07 1.74 5.15 -17.31 -0.09 1.65 16 17 N -0.77 -18.65 10.94 55.56 0.61 -18.04 16 18 Si 0.91 17.31 29.59 -169.99 -5.03 12.28 16 19 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 20 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 22 C -0.24 -5.79 9.73 -39.27 -0.38 -6.17 16 23 C -0.02 -0.59 9.52 -39.61 -0.38 -0.96 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.08 1.22 7.50 -51.93 -0.39 0.83 16 33 H 0.05 0.70 7.12 -51.92 -0.37 0.33 16 34 H 0.05 0.63 8.12 -51.93 -0.42 0.21 16 35 H 0.10 1.59 5.12 -51.93 -0.27 1.32 16 36 H 0.11 2.07 4.45 -52.49 -0.23 1.84 16 37 H 0.12 2.95 6.17 -52.49 -0.32 2.62 16 38 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 39 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 40 H 0.10 2.23 7.84 -52.49 -0.41 1.81 16 LS Contribution 332.30 15.07 5.01 5.01 Total: -1.00 -29.31 332.30 -7.41 -36.72 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.77 Total: 6.26 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.41 Total: -12.09 kcal Atomic # 7 Polarization: -29.31 SS G_CDS: 0.08 Total: -29.23 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.29 Total: -18.96 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.31 -7.41 -36.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270293046.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.131 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds