Wall clock time and date at job start Mon Mar 30 2020 01:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47192 * 2 1 4 4 C 1.36902 * 120.00237 * 279.27030 * 3 2 1 5 5 H 1.08004 * 120.00776 * 171.64862 * 4 3 2 6 6 C 1.39026 * 120.00062 * 351.64422 * 4 3 2 7 7 N 1.31386 * 119.99655 * 27.56892 * 6 4 3 8 8 Si 1.86794 * 120.00438 * 207.56291 * 6 4 3 9 9 H 1.48501 * 109.46865 * 94.99477 * 8 6 4 10 10 H 1.48504 * 109.47413 * 214.99289 * 8 6 4 11 11 H 1.48503 * 109.47264 * 334.99591 * 8 6 4 12 12 C 1.34779 * 120.00288 * 99.27550 * 3 2 1 13 13 O 1.21618 * 120.00283 * 186.56311 * 12 3 2 14 14 C 1.47432 * 119.99395 * 6.55520 * 12 3 2 15 15 C 1.39766 * 120.20198 * 330.32886 * 14 12 3 16 16 C 1.37767 * 119.89929 * 179.97438 * 15 14 12 17 17 C 1.38559 * 120.31246 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.80108 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.46859 * 299.99557 * 18 17 16 20 20 C 1.53003 * 109.47316 * 59.99841 * 18 17 16 21 21 C 1.38072 * 120.39698 * 0.03956 * 17 16 15 22 22 C 1.38684 * 120.09459 * 359.96207 * 21 17 16 23 23 O 1.35655 * 120.15551 * 180.29658 * 22 21 17 24 24 H 1.08995 * 109.47433 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46521 * 299.99954 * 1 2 3 26 26 H 1.08999 * 109.46847 * 59.99608 * 1 2 3 27 27 H 1.09002 * 109.47021 * 240.00017 * 2 1 3 28 28 H 1.09003 * 109.47331 * 120.00393 * 2 1 3 29 29 H 0.97000 * 120.00064 * 180.02562 * 7 6 4 30 30 H 1.07995 * 120.04277 * 0.02562 * 15 14 12 31 31 H 1.08008 * 119.84538 * 180.02562 * 16 15 14 32 32 H 1.08996 * 109.46793 * 179.97438 * 18 17 16 33 33 H 1.08996 * 109.47258 * 60.00481 * 19 18 17 34 34 H 1.09000 * 109.46559 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.46848 * 299.99980 * 19 18 17 36 36 H 1.09002 * 109.46469 * 299.99842 * 20 18 17 37 37 H 1.08995 * 109.47191 * 59.99585 * 20 18 17 38 38 H 1.08995 * 109.46576 * 180.02562 * 20 18 17 39 39 H 1.08004 * 119.95617 * 179.97438 * 21 17 16 40 40 H 0.96693 * 114.00176 * 269.72026 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0665 2.0902 -1.1701 5 1 2.2965 3.1453 -1.1532 6 6 1.8194 1.4521 -2.3803 7 7 1.0454 0.3910 -2.4174 8 14 2.5875 2.1032 -3.9536 9 1 3.8484 1.3690 -4.2295 10 1 1.6435 1.9077 -5.0832 11 1 2.8812 3.5507 -3.7988 12 6 2.4204 1.9538 1.1519 13 8 2.7123 3.1342 1.1747 14 6 2.5061 1.1492 2.3844 15 6 1.6534 0.0579 2.5722 16 6 1.7392 -0.6900 3.7261 17 6 2.6677 -0.3659 4.7021 18 6 2.7520 -1.1922 5.9595 19 6 1.4096 -1.1444 6.6921 20 6 3.0836 -2.6411 5.5965 21 6 3.5160 0.7097 4.5297 22 6 3.4440 1.4740 3.3747 23 8 4.2810 2.5275 3.2013 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.8733 -0.0545 -3.2616 30 1 0.9290 -0.1992 1.8137 31 1 1.0801 -1.5335 3.8702 32 1 3.5333 -0.7920 6.6055 33 1 0.6286 -1.5449 6.0459 34 1 1.4708 -1.7417 7.6018 35 1 1.1735 -0.1122 6.9507 36 1 2.3025 -3.0415 4.9502 37 1 4.0399 -2.6751 5.0745 38 1 3.1441 -3.2387 6.5060 39 1 4.2368 0.9562 5.2953 40 1 3.9330 3.3654 3.5357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271257383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:51 Heat of formation + Delta-G solvation = -19.293465 kcal Electronic energy + Delta-G solvation = -22151.289839 eV Core-core repulsion = 18932.834870 eV Total energy + Delta-G solvation = -3218.454969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.04065 -38.08132 -36.94469 -35.12802 -34.51204 -32.01835 -30.34968 -29.34065 -28.96321 -27.19077 -25.29848 -23.36509 -22.54373 -21.89351 -20.28257 -19.56862 -17.17202 -16.92605 -16.42750 -15.92723 -15.17903 -14.78969 -14.47026 -14.10386 -14.06186 -13.69733 -13.55831 -13.38093 -13.25034 -12.44079 -12.34836 -12.05927 -11.96454 -11.58720 -11.41894 -11.18388 -11.15093 -11.06164 -11.00242 -10.78317 -10.60647 -10.35566 -10.24923 -10.00816 -9.72459 -8.79576 -8.46723 -8.26337 -8.07409 -7.84651 -6.43628 -3.76034 1.40283 1.67621 3.13972 3.24562 3.30289 3.67165 4.06876 4.34103 4.56336 4.79299 4.84466 4.93754 5.07893 5.16814 5.32474 5.40107 5.48493 5.55547 5.63944 5.73039 5.76966 5.88904 5.93120 6.11587 6.15931 6.18871 6.28675 6.34621 6.51165 6.58640 6.63843 6.73687 6.83446 6.86815 7.18064 7.28676 7.45895 7.73761 8.06172 8.22096 8.47874 9.14487 9.38909 9.99835 10.51630 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025977 B = 0.005124 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.620942 B = 5462.820715 C = 6131.018245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.084 3.916 3 N -0.426 5.426 4 C -0.301 4.301 5 H 0.108 0.892 6 C 0.033 3.967 7 N -0.855 5.855 8 Si 0.918 3.082 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.473 3.527 13 O -0.590 6.590 14 C -0.126 4.126 15 C -0.113 4.113 16 C -0.136 4.136 17 C -0.066 4.066 18 C -0.055 4.055 19 C -0.143 4.143 20 C -0.144 4.144 21 C -0.157 4.157 22 C 0.146 3.854 23 O -0.484 6.484 24 H 0.040 0.960 25 H 0.025 0.975 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.268 0.732 30 H 0.166 0.834 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.123 0.877 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 -6.929 12.907 14.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.039 4.039 3 N -0.142 5.142 4 C -0.429 4.429 5 H 0.126 0.874 6 C -0.170 4.170 7 N -0.494 5.494 8 Si 0.745 3.255 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.192 1.192 12 C 0.263 3.737 13 O -0.477 6.477 14 C -0.130 4.130 15 C -0.131 4.131 16 C -0.154 4.154 17 C -0.067 4.067 18 C -0.073 4.073 19 C -0.201 4.201 20 C -0.201 4.201 21 C -0.175 4.175 22 C 0.100 3.900 23 O -0.295 6.295 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.183 0.817 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.141 0.859 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.158 -6.891 12.443 14.225 hybrid contribution 0.004 0.457 -0.651 0.796 sum 0.163 -6.433 11.792 13.434 Atomic orbital electron populations 1.22156 0.96287 1.00050 1.02214 1.22467 0.94789 0.84170 1.02451 1.43741 1.52297 1.11751 1.06430 1.19787 1.45151 0.95768 0.82146 0.87391 1.25282 0.95750 0.96466 0.99548 1.70200 1.30556 1.21514 1.27096 0.86033 0.79278 0.79749 0.80480 1.20311 1.21057 1.19215 1.17512 0.85909 0.87398 0.82839 1.90568 1.56420 1.15626 1.85086 1.20732 0.97153 0.97970 0.97155 1.22514 0.99548 0.93523 0.97525 1.20856 0.99776 1.00969 0.93816 1.19687 0.95780 0.95410 0.95782 1.20102 0.98340 0.95119 0.93737 1.21854 0.96532 1.01898 0.99773 1.21859 1.02037 0.94963 1.01265 1.21137 1.01245 0.97820 0.97310 1.18426 0.89485 0.90320 0.91808 1.84667 1.42205 1.18089 1.84512 0.94056 0.95583 0.88166 0.88032 0.91710 0.92124 0.81741 0.86173 0.90735 0.92290 0.92664 0.92557 0.92279 0.92483 0.92656 0.85890 0.75220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.49 37.16 0.32 -2.78 16 2 C 0.08 1.89 4.87 -4.05 -0.02 1.87 16 3 N -0.43 -11.11 2.64 -116.03 -0.31 -11.41 16 4 C -0.30 -8.37 9.36 -15.00 -0.14 -8.51 16 5 H 0.11 3.19 7.32 -52.48 -0.38 2.81 16 6 C 0.03 0.85 5.13 -17.45 -0.09 0.76 16 7 N -0.85 -21.20 7.95 55.50 0.44 -20.76 16 8 Si 0.92 20.36 29.63 -169.99 -5.04 15.32 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 C 0.47 12.29 7.31 -12.52 -0.09 12.19 16 13 O -0.59 -16.93 15.33 -13.96 -0.21 -17.14 16 14 C -0.13 -2.70 5.61 -104.84 -0.59 -3.29 16 15 C -0.11 -2.05 7.49 -39.18 -0.29 -2.35 16 16 C -0.14 -2.03 8.68 -39.64 -0.34 -2.37 16 17 C -0.07 -0.92 4.79 -104.56 -0.50 -1.42 16 18 C -0.05 -0.58 3.09 -91.77 -0.28 -0.87 16 19 C -0.14 -1.35 9.00 37.16 0.33 -1.01 16 20 C -0.14 -1.40 9.01 37.16 0.33 -1.06 16 21 C -0.16 -2.45 9.59 -39.48 -0.38 -2.83 16 22 C 0.15 2.83 6.69 -38.68 -0.26 2.57 16 23 O -0.48 -9.50 12.00 -37.89 -0.45 -9.96 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.03 0.51 7.13 -51.93 -0.37 0.14 16 26 H 0.10 2.38 6.16 -51.93 -0.32 2.06 16 27 H 0.10 2.46 5.88 -51.93 -0.31 2.15 16 28 H 0.07 1.32 3.93 -52.77 -0.21 1.12 16 29 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 30 H 0.17 2.99 2.63 -52.49 -0.14 2.85 16 31 H 0.12 1.48 7.07 -52.48 -0.37 1.11 16 32 H 0.07 0.74 7.86 -51.93 -0.41 0.33 16 33 H 0.06 0.55 7.37 -51.93 -0.38 0.17 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.57 7.37 -51.93 -0.38 0.19 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.12 1.65 7.93 -52.48 -0.42 1.23 16 40 H 0.39 6.26 9.05 45.56 0.41 6.67 16 LS Contribution 316.71 15.07 4.77 4.77 Total: -1.00 -30.70 316.71 -7.32 -38.02 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -4.52 Total: 10.25 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.00 Total: -9.09 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.13 Total: -32.17 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.67 Total: -27.10 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.04 Total: 15.32 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.70 -7.32 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271257383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.725 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds