Wall clock time and date at job start Mon Mar 30 2020 01:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47192 * 2 1 4 4 C 1.36902 * 120.00237 * 279.27030 * 3 2 1 5 5 H 1.08004 * 120.00776 * 171.64862 * 4 3 2 6 6 C 1.39026 * 120.00062 * 351.64422 * 4 3 2 7 7 N 1.31386 * 119.99655 * 27.56892 * 6 4 3 8 8 Si 1.86794 * 120.00438 * 207.56291 * 6 4 3 9 9 H 1.48501 * 109.46865 * 94.99477 * 8 6 4 10 10 H 1.48504 * 109.47413 * 214.99289 * 8 6 4 11 11 H 1.48503 * 109.47264 * 334.99591 * 8 6 4 12 12 C 1.34779 * 120.00288 * 99.27550 * 3 2 1 13 13 O 1.21618 * 120.00283 * 186.56311 * 12 3 2 14 14 C 1.47432 * 119.99395 * 6.55520 * 12 3 2 15 15 C 1.39766 * 120.20198 * 330.32886 * 14 12 3 16 16 C 1.37767 * 119.89929 * 179.97438 * 15 14 12 17 17 C 1.38559 * 120.31246 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.80108 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.46859 * 299.99557 * 18 17 16 20 20 C 1.53003 * 109.47316 * 59.99841 * 18 17 16 21 21 C 1.38072 * 120.39698 * 0.03956 * 17 16 15 22 22 C 1.38684 * 120.09459 * 359.96207 * 21 17 16 23 23 O 1.35655 * 120.15551 * 180.29658 * 22 21 17 24 24 H 1.08995 * 109.47433 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46521 * 299.99954 * 1 2 3 26 26 H 1.08999 * 109.46847 * 59.99608 * 1 2 3 27 27 H 1.09002 * 109.47021 * 240.00017 * 2 1 3 28 28 H 1.09003 * 109.47331 * 120.00393 * 2 1 3 29 29 H 0.97000 * 120.00064 * 180.02562 * 7 6 4 30 30 H 1.07995 * 120.04277 * 0.02562 * 15 14 12 31 31 H 1.08008 * 119.84538 * 180.02562 * 16 15 14 32 32 H 1.08996 * 109.46793 * 179.97438 * 18 17 16 33 33 H 1.08996 * 109.47258 * 60.00481 * 19 18 17 34 34 H 1.09000 * 109.46559 * 180.02562 * 19 18 17 35 35 H 1.09000 * 109.46848 * 299.99980 * 19 18 17 36 36 H 1.09002 * 109.46469 * 299.99842 * 20 18 17 37 37 H 1.08995 * 109.47191 * 59.99585 * 20 18 17 38 38 H 1.08995 * 109.46576 * 180.02562 * 20 18 17 39 39 H 1.08004 * 119.95617 * 179.97438 * 21 17 16 40 40 H 0.96693 * 114.00176 * 269.72026 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0665 2.0902 -1.1701 5 1 2.2965 3.1453 -1.1532 6 6 1.8194 1.4521 -2.3803 7 7 1.0454 0.3910 -2.4174 8 14 2.5875 2.1032 -3.9536 9 1 3.8484 1.3690 -4.2295 10 1 1.6435 1.9077 -5.0832 11 1 2.8812 3.5507 -3.7988 12 6 2.4204 1.9538 1.1519 13 8 2.7123 3.1342 1.1747 14 6 2.5061 1.1492 2.3844 15 6 1.6534 0.0579 2.5722 16 6 1.7392 -0.6900 3.7261 17 6 2.6677 -0.3659 4.7021 18 6 2.7520 -1.1922 5.9595 19 6 1.4096 -1.1444 6.6921 20 6 3.0836 -2.6411 5.5965 21 6 3.5160 0.7097 4.5297 22 6 3.4440 1.4740 3.3747 23 8 4.2810 2.5275 3.2013 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 0.8733 -0.0545 -3.2616 30 1 0.9290 -0.1992 1.8137 31 1 1.0801 -1.5335 3.8702 32 1 3.5333 -0.7920 6.6055 33 1 0.6286 -1.5449 6.0459 34 1 1.4708 -1.7417 7.6018 35 1 1.1735 -0.1122 6.9507 36 1 2.3025 -3.0415 4.9502 37 1 4.0399 -2.6751 5.0745 38 1 3.1441 -3.2387 6.5060 39 1 4.2368 0.9562 5.2953 40 1 3.9330 3.3654 3.5357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271257383.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:50 Heat of formation + Delta-G solvation = -37.792556 kcal Electronic energy + Delta-G solvation = -22152.092020 eV Core-core repulsion = 18932.834870 eV Total energy + Delta-G solvation = -3219.257150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.57208 -39.71227 -38.31999 -37.01832 -35.77836 -33.84383 -31.96490 -30.92732 -30.35014 -27.88666 -27.14387 -24.79129 -24.05501 -23.46820 -21.56657 -21.12266 -18.93292 -18.47341 -18.14940 -17.26504 -16.70467 -16.47202 -16.05111 -15.82002 -15.44826 -15.28733 -14.78368 -14.70381 -14.26338 -14.07661 -13.82579 -13.40757 -13.12547 -13.02026 -12.90883 -12.71526 -12.62907 -12.51551 -12.16636 -12.15625 -12.11830 -11.96102 -11.61274 -11.55591 -11.22352 -10.73286 -10.32936 -9.89979 -9.62161 -9.46946 -8.39075 -5.82530 -0.00327 0.34426 1.34634 1.40412 1.51199 2.06756 2.23506 2.70734 2.95181 3.13211 3.34227 3.75377 3.88877 3.99652 4.19452 4.33440 4.36053 4.39592 4.54556 4.58055 4.81291 4.82346 4.87871 4.91503 4.98754 5.04138 5.08682 5.09363 5.21895 5.32614 5.35805 5.42457 5.46246 5.48630 5.52793 5.67084 5.90263 5.94149 6.04395 6.50953 6.84142 7.14423 7.43900 8.04214 8.54040 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025977 B = 0.005124 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.620942 B = 5462.820715 C = 6131.018245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.086 3.914 3 N -0.438 5.438 4 C -0.354 4.354 5 H 0.071 0.929 6 C 0.012 3.988 7 N -0.852 5.852 8 Si 0.978 3.022 9 H -0.272 1.272 10 H -0.266 1.266 11 H -0.281 1.281 12 C 0.458 3.542 13 O -0.637 6.637 14 C -0.165 4.165 15 C -0.116 4.116 16 C -0.126 4.126 17 C -0.046 4.046 18 C -0.053 4.053 19 C -0.143 4.143 20 C -0.144 4.144 21 C -0.151 4.151 22 C 0.129 3.871 23 O -0.503 6.503 24 H 0.074 0.926 25 H 0.030 0.970 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.277 0.723 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.150 0.850 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 -9.853 14.827 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.036 4.036 3 N -0.154 5.154 4 C -0.481 4.481 5 H 0.089 0.911 6 C -0.192 4.192 7 N -0.489 5.489 8 Si 0.802 3.198 9 H -0.197 1.197 10 H -0.191 1.191 11 H -0.206 1.206 12 C 0.249 3.751 13 O -0.527 6.527 14 C -0.169 4.169 15 C -0.134 4.134 16 C -0.143 4.143 17 C -0.047 4.047 18 C -0.072 4.072 19 C -0.200 4.200 20 C -0.201 4.201 21 C -0.170 4.170 22 C 0.083 3.917 23 O -0.315 6.315 24 H 0.093 0.907 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.180 0.820 31 H 0.174 0.826 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.167 0.833 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -0.256 -9.863 14.366 17.427 hybrid contribution 0.108 1.296 -1.105 1.706 sum -0.148 -8.567 13.261 15.788 Atomic orbital electron populations 1.21987 0.94929 1.01702 1.00868 1.22572 0.95853 0.82486 1.02641 1.43930 1.52579 1.12800 1.06048 1.19561 1.49281 0.95075 0.84165 0.91068 1.25878 0.95152 0.96876 1.01305 1.70253 1.29202 1.21273 1.28176 0.85168 0.78766 0.78393 0.77452 1.19733 1.19071 1.20570 1.18360 0.84951 0.87489 0.84275 1.90495 1.58238 1.17784 1.86223 1.20560 1.00360 0.99783 0.96162 1.22466 0.98871 0.93092 0.98988 1.21204 0.99928 1.00902 0.92307 1.20205 0.93597 0.94202 0.96676 1.20220 0.99793 0.95142 0.92000 1.21863 0.95484 1.02079 1.00583 1.21873 1.01634 0.94262 1.02370 1.21398 1.01831 0.97416 0.96312 1.18754 0.89456 0.90790 0.92690 1.84612 1.42813 1.19016 1.85103 0.90711 0.95084 0.91295 0.89937 0.89292 0.91266 0.81992 0.82615 0.89446 0.92059 0.90537 0.93129 0.92013 0.93344 0.90481 0.83276 0.74097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 8.49 71.98 0.61 -5.03 16 2 C 0.09 3.93 4.87 86.38 0.42 4.35 16 3 N -0.44 -23.99 2.64 -639.26 -1.69 -25.68 16 4 C -0.35 -20.84 9.36 84.09 0.79 -20.06 16 5 H 0.07 4.60 7.32 -2.91 -0.02 4.57 16 6 C 0.01 0.65 5.13 84.95 0.44 1.09 16 7 N -0.85 -42.54 7.95 21.68 0.17 -42.37 16 8 Si 0.98 42.66 29.63 68.60 2.03 44.69 16 9 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 10 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 C 0.46 25.14 7.31 86.66 0.63 25.77 16 13 O -0.64 -39.31 15.33 14.29 0.22 -39.09 16 14 C -0.16 -7.21 5.61 -20.01 -0.11 -7.32 16 15 C -0.12 -4.09 7.49 22.53 0.17 -3.92 16 16 C -0.13 -3.33 8.68 22.23 0.19 -3.14 16 17 C -0.05 -1.13 4.79 -19.83 -0.09 -1.23 16 18 C -0.05 -0.89 3.09 -11.54 -0.04 -0.92 16 19 C -0.14 -2.01 9.00 71.98 0.65 -1.37 16 20 C -0.14 -2.11 9.01 71.98 0.65 -1.47 16 21 C -0.15 -4.41 9.59 22.34 0.21 -4.19 16 22 C 0.13 5.03 6.69 22.86 0.15 5.18 16 23 O -0.50 -20.49 12.00 -71.33 -0.86 -21.35 16 24 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 25 H 0.03 1.22 7.13 -2.39 -0.02 1.20 16 26 H 0.07 3.30 6.16 -2.39 -0.01 3.29 16 27 H 0.08 4.04 5.88 -2.39 -0.01 4.03 16 28 H 0.09 3.61 3.93 -3.17 -0.01 3.60 16 29 H 0.28 12.77 8.31 -92.71 -0.77 12.00 16 30 H 0.16 5.71 2.63 -2.91 -0.01 5.70 16 31 H 0.16 3.05 7.07 -2.91 -0.02 3.03 16 32 H 0.09 1.30 7.86 -2.39 -0.02 1.28 16 33 H 0.06 0.85 7.37 -2.39 -0.02 0.83 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 0.88 7.37 -2.39 -0.02 0.87 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.15 3.53 7.93 -2.91 -0.02 3.51 16 40 H 0.40 13.64 9.05 -74.06 -0.67 12.97 16 Total: -1.00 -71.44 316.71 4.95 -66.49 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.40 Total: 29.55 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 4.67 Total: -12.25 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: -1.52 Total: -68.04 kcal Atomic # 8 Polarization: -59.80 SS G_CDS: -0.64 Total: -60.44 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -71.44 4.95 -66.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271257383.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.697 kcal (2) G-P(sol) polarization free energy of solvation -71.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds