Wall clock time and date at job start Mon Mar 30 2020 02:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 116.99902 * 2 1 4 4 O 1.20822 * 120.00134 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99703 * 180.02562 * 3 2 1 6 6 N 1.46900 * 109.46893 * 185.27747 * 5 3 2 7 7 C 1.46903 * 111.00184 * 295.89250 * 6 5 3 8 8 C 1.50704 * 109.47266 * 297.53411 * 7 6 5 9 9 H 1.07999 * 120.00008 * 354.85398 * 8 7 6 10 10 C 1.37876 * 119.99967 * 174.84888 * 8 7 6 11 11 N 1.31518 * 119.99773 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99983 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47149 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46923 * 120.00290 * 12 10 8 15 15 H 1.48498 * 109.47380 * 240.00446 * 12 10 8 16 16 C 1.46901 * 111.00187 * 59.84966 * 6 5 3 17 17 C 1.52996 * 109.46861 * 66.04075 * 16 6 5 18 18 C 1.50697 * 109.47129 * 180.02562 * 17 16 6 19 19 C 1.38238 * 119.99877 * 90.00240 * 18 17 16 20 20 C 1.38237 * 119.99795 * 179.97438 * 19 18 17 21 21 C 1.38236 * 120.00336 * 359.97438 * 20 19 18 22 22 C 1.38227 * 119.99721 * 0.27685 * 21 20 19 23 23 C 1.38237 * 120.00398 * 359.51343 * 22 21 20 24 24 H 1.09006 * 109.46827 * 300.00045 * 1 2 3 25 25 H 1.09001 * 109.47359 * 59.99842 * 1 2 3 26 26 H 1.08996 * 109.47128 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46706 * 65.28122 * 5 3 2 28 28 H 1.08989 * 109.47568 * 305.28149 * 5 3 2 29 29 H 1.08999 * 109.46995 * 57.53609 * 7 6 5 30 30 H 1.08999 * 109.47093 * 177.53593 * 7 6 5 31 31 H 0.97001 * 119.99670 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.46559 * 306.04551 * 16 6 5 33 33 H 1.08991 * 109.47457 * 186.04419 * 16 6 5 34 34 H 1.09004 * 109.46913 * 60.00399 * 17 16 6 35 35 H 1.08997 * 109.47787 * 300.00492 * 17 16 6 36 36 H 1.07998 * 120.00273 * 359.97438 * 19 18 17 37 37 H 1.08007 * 119.99557 * 179.97438 * 20 19 18 38 38 H 1.07997 * 119.99966 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.00100 * 179.72706 * 22 21 20 40 40 H 1.07994 * 120.00519 * 180.27296 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9832 2.6776 0.1269 7 6 3.5519 3.4629 -1.0373 8 6 4.2147 2.9253 -2.2794 9 1 4.9515 2.1396 -2.2013 10 6 3.8804 3.4366 -3.5154 11 7 2.9835 4.3937 -3.6104 12 14 4.7024 2.7707 -5.0550 13 1 5.6676 1.7062 -4.6798 14 1 3.6711 2.2060 -5.9619 15 1 5.4218 3.8701 -5.7470 16 6 3.4783 3.2656 1.3749 17 6 4.1441 2.5779 2.5685 18 6 3.6257 3.1806 3.8487 19 6 2.5070 2.6467 4.4606 20 6 2.0318 3.1992 5.6353 21 6 2.6755 4.2852 6.1984 22 6 3.7911 4.8223 5.5838 23 6 4.2690 4.2672 4.4114 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.9512 0.8648 -0.9344 28 1 3.9606 0.7010 0.8379 29 1 2.4695 3.3913 -1.1430 30 1 3.8351 4.5061 -0.8969 31 1 2.7486 4.7537 -4.4800 32 1 2.3987 3.1264 1.4312 33 1 3.7088 4.3306 1.3941 34 1 5.2238 2.7171 2.5121 35 1 3.9136 1.5128 2.5493 36 1 2.0042 1.7980 4.0209 37 1 1.1574 2.7824 6.1131 38 1 2.3045 4.7166 7.1163 39 1 4.2915 5.6736 6.0213 40 1 5.1432 4.6840 3.9336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272088048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:10 Heat of formation + Delta-G solvation = -73.952458 kcal Electronic energy + Delta-G solvation = -21609.437146 eV Core-core repulsion = 18388.611985 eV Total energy + Delta-G solvation = -3220.825161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.73225 -40.16712 -38.64405 -36.88463 -34.99780 -33.77515 -31.74513 -30.34900 -30.02613 -28.17310 -27.08525 -24.36763 -23.42988 -23.19016 -21.92825 -21.17447 -18.85315 -18.40490 -17.75905 -17.56052 -17.18143 -16.71434 -16.44238 -16.22767 -15.67653 -15.50808 -14.97185 -14.69448 -14.26559 -14.10226 -13.92037 -13.77568 -13.62939 -13.23470 -12.95843 -12.87989 -12.64052 -12.53484 -12.40127 -12.16457 -11.97553 -11.81662 -11.80656 -11.73672 -11.43246 -11.21627 -10.61523 -9.79622 -9.57778 -9.07683 -8.18351 -6.29459 0.47101 0.52544 1.25827 1.41717 1.42410 1.55986 1.90168 2.40386 2.87043 3.14869 3.17600 3.91513 3.98786 4.03446 4.17197 4.19059 4.28702 4.31064 4.31975 4.39624 4.42090 4.62965 4.65281 4.67870 4.71507 4.73454 4.97393 5.10931 5.18163 5.22800 5.25742 5.32713 5.56826 5.60289 5.63954 5.66126 5.77796 6.00138 6.12890 6.17090 6.47788 6.86052 6.89030 7.39926 8.93130 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018532 B = 0.004793 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.524181 B = 5840.801887 C = 6825.768465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.367 6.367 3 C 0.429 3.571 4 O -0.532 6.532 5 C 0.068 3.932 6 N -0.507 5.507 7 C 0.188 3.812 8 C -0.525 4.525 9 H 0.074 0.926 10 C -0.001 4.001 11 N -0.937 5.937 12 Si 0.969 3.031 13 H -0.253 1.253 14 H -0.283 1.283 15 H -0.281 1.281 16 C 0.051 3.949 17 C -0.067 4.067 18 C -0.090 4.090 19 C -0.132 4.132 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.125 4.125 23 C -0.131 4.131 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.137 0.863 27 H 0.120 0.880 28 H 0.141 0.859 29 H 0.002 0.998 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.036 0.964 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 -7.619 17.059 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.273 3.727 4 O -0.422 6.422 5 C -0.062 4.062 6 N -0.229 5.229 7 C 0.062 3.938 8 C -0.563 4.563 9 H 0.092 0.908 10 C -0.199 4.199 11 N -0.577 5.577 12 Si 0.793 3.207 13 H -0.177 1.177 14 H -0.209 1.209 15 H -0.207 1.207 16 C -0.077 4.077 17 C -0.104 4.104 18 C -0.091 4.091 19 C -0.150 4.150 20 C -0.144 4.144 21 C -0.150 4.150 22 C -0.143 4.143 23 C -0.149 4.149 24 H 0.079 0.921 25 H 0.062 0.938 26 H 0.155 0.845 27 H 0.138 0.862 28 H 0.158 0.842 29 H 0.019 0.981 30 H 0.009 0.991 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.720 -7.203 16.953 18.434 hybrid contribution -1.129 0.442 -1.272 1.757 sum -1.849 -6.761 15.682 17.177 Atomic orbital electron populations 1.23428 0.75999 1.05396 1.01632 1.86535 1.24283 1.33530 1.83917 1.26121 0.94451 0.81137 0.71020 1.90608 1.68146 1.37150 1.46258 1.22332 0.83703 0.93225 1.06964 1.62540 1.56283 1.01102 1.02987 1.19693 0.94965 0.91707 0.87468 1.21580 1.22806 1.20740 0.91154 0.90766 1.25973 0.95721 0.95330 1.02880 1.70153 1.33829 1.28484 1.25259 0.85335 0.78377 0.78565 0.78375 1.17688 1.20885 1.20673 1.22230 0.97834 0.98453 0.89220 1.20554 1.01040 0.99479 0.89341 1.19987 0.96173 0.96699 0.96193 1.21233 0.96365 1.00893 0.96552 1.21428 1.00431 0.96879 0.95702 1.21473 0.95999 0.96576 1.00910 1.21460 0.97080 1.00322 0.95457 1.21317 1.00768 0.96080 0.96688 0.92146 0.93808 0.84531 0.86231 0.84169 0.98065 0.99077 0.92960 0.94545 0.92980 0.89567 0.90247 0.86258 0.84204 0.83722 0.84014 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.56 113.37 1.20 1.96 16 2 O -0.37 -12.03 10.57 -51.39 -0.54 -12.57 16 3 C 0.43 16.88 7.25 71.24 0.52 17.40 16 4 O -0.53 -25.05 11.40 21.98 0.25 -24.80 16 5 C 0.07 2.47 5.50 85.56 0.47 2.94 16 6 N -0.51 -21.75 4.73 -905.37 -4.28 -26.03 16 7 C 0.19 10.33 4.44 85.56 0.38 10.71 16 8 C -0.52 -29.54 8.31 25.60 0.21 -29.32 16 9 H 0.07 3.93 7.08 -2.91 -0.02 3.91 16 10 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 11 N -0.94 -58.32 13.29 21.45 0.28 -58.03 16 12 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 13 H -0.25 -10.77 7.11 99.48 0.71 -10.06 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 16 C 0.05 1.94 4.63 86.30 0.40 2.34 16 17 C -0.07 -1.92 5.27 29.85 0.16 -1.76 16 18 C -0.09 -2.45 5.13 -19.86 -0.10 -2.55 16 19 C -0.13 -3.35 9.70 22.27 0.22 -3.14 16 20 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 21 C -0.13 -2.61 10.05 22.27 0.22 -2.38 16 22 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 23 C -0.13 -3.28 9.70 22.27 0.22 -3.06 16 24 H 0.06 1.53 8.13 -2.38 -0.02 1.51 16 25 H 0.04 1.30 8.13 -2.39 -0.02 1.28 16 26 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.12 4.55 6.61 -2.38 -0.02 4.53 16 28 H 0.14 3.85 6.48 -2.39 -0.02 3.83 16 29 H 0.00 0.10 5.49 -2.39 -0.01 0.09 16 30 H -0.01 -0.54 8.00 -2.39 -0.02 -0.56 16 31 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 32 H 0.04 1.54 5.43 -2.39 -0.01 1.53 16 33 H 0.05 2.14 7.98 -2.39 -0.02 2.12 16 34 H 0.09 2.37 8.09 -2.38 -0.02 2.35 16 35 H 0.08 2.04 6.50 -2.39 -0.02 2.03 16 36 H 0.12 2.86 8.06 -2.91 -0.02 2.84 16 37 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 38 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 39 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -72.33 331.60 3.56 -68.77 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 1.02 Total: 17.75 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 4.80 Total: -11.41 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -4.00 Total: -84.07 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.29 Total: -37.37 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -72.33 3.56 -68.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272088048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.178 kcal (2) G-P(sol) polarization free energy of solvation -72.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds