Wall clock time and date at job start Mon Mar 30 2020 01:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47475 * 2 1 4 4 C 1.37095 * 120.00068 * 264.77524 * 3 2 1 5 5 H 1.07995 * 119.99786 * 138.85643 * 4 3 2 6 6 C 1.38948 * 120.00045 * 318.84657 * 4 3 2 7 7 N 1.31414 * 120.00237 * 341.83574 * 6 4 3 8 8 Si 1.86802 * 119.99914 * 161.83111 * 6 4 3 9 9 H 1.48496 * 109.46964 * 90.00656 * 8 6 4 10 10 H 1.48499 * 109.47085 * 210.00047 * 8 6 4 11 11 H 1.48499 * 109.47069 * 330.00284 * 8 6 4 12 12 C 1.34779 * 119.99411 * 84.76713 * 3 2 1 13 13 O 1.21299 * 119.99786 * 179.97438 * 12 3 2 14 14 C 1.50695 * 120.00148 * 0.02562 * 12 3 2 15 15 C 1.53004 * 109.47131 * 179.97438 * 14 12 3 16 16 C 1.52999 * 109.47260 * 59.99440 * 15 14 12 17 17 O 1.42900 * 109.46843 * 299.99665 * 15 14 12 18 18 C 1.50695 * 109.47416 * 179.97438 * 15 14 12 19 19 C 1.38237 * 119.99924 * 329.72397 * 18 15 14 20 20 C 1.38233 * 120.00269 * 179.78658 * 19 18 15 21 21 C 1.38242 * 119.99892 * 0.44370 * 20 19 18 22 22 C 1.38239 * 119.99794 * 359.80911 * 21 20 19 23 23 C 1.38228 * 120.00366 * 149.99708 * 18 15 14 24 24 H 1.09005 * 109.47320 * 299.99982 * 1 2 3 25 25 H 1.09007 * 109.46913 * 59.99468 * 1 2 3 26 26 H 1.08996 * 109.47522 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47002 * 240.00711 * 2 1 3 28 28 H 1.08998 * 109.47450 * 120.00411 * 2 1 3 29 29 H 0.96998 * 120.00543 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47678 * 59.99324 * 14 12 3 31 31 H 1.09000 * 109.47188 * 299.99312 * 14 12 3 32 32 H 1.09002 * 109.47377 * 180.02562 * 16 15 14 33 33 H 1.09008 * 109.46988 * 300.00365 * 16 15 14 34 34 H 1.09001 * 109.47111 * 60.00003 * 16 15 14 35 35 H 0.96699 * 114.00058 * 299.99644 * 17 15 14 36 36 H 1.08007 * 119.99884 * 359.97438 * 19 18 15 37 37 H 1.07996 * 120.00697 * 180.27447 * 20 19 18 38 38 H 1.07993 * 120.00077 * 179.83299 * 21 20 19 39 39 H 1.07997 * 120.00023 * 179.97438 * 22 21 20 40 40 H 1.08009 * 120.00187 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3489 1.9915 -1.1823 5 1 2.0744 3.0219 -1.3533 6 6 3.0371 1.2843 -2.1605 7 7 3.6790 0.1818 -1.8453 8 14 3.0498 1.9007 -3.9239 9 1 4.2054 2.8120 -4.1214 10 1 3.1657 0.7464 -4.8509 11 1 1.7883 2.6335 -4.2012 12 6 2.1426 2.0519 1.1624 13 8 2.5475 3.1954 1.1625 14 6 1.7797 1.3810 2.4620 15 6 2.0117 2.3535 3.6203 16 6 1.1391 3.5951 3.4262 17 8 3.3876 2.7382 3.6508 18 6 1.6482 1.6828 4.9199 19 6 0.6605 0.7160 4.9461 20 6 0.3301 0.0976 6.1374 21 6 0.9810 0.4524 7.3042 22 6 1.9651 1.4229 7.2789 23 6 2.2985 2.0382 6.0867 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 4.1598 -0.3117 -2.5280 30 1 2.4017 0.4966 2.6005 31 1 0.7304 1.0871 2.4386 32 1 1.3046 4.2882 4.2511 33 1 1.4017 4.0804 2.4861 34 1 0.0896 3.3017 3.4028 35 1 3.9999 1.9997 3.7714 36 1 0.1490 0.4417 4.0352 37 1 -0.4385 -0.6609 6.1572 38 1 0.7210 -0.0288 8.2354 39 1 2.4734 1.7005 8.1904 40 1 3.0675 2.7964 6.0669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272893434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:17 Heat of formation + Delta-G solvation = -54.608590 kcal Electronic energy + Delta-G solvation = -22181.466408 eV Core-core repulsion = 18961.480060 eV Total energy + Delta-G solvation = -3219.986348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.95193 -38.43544 -36.59195 -34.75839 -32.54345 -31.92603 -30.82832 -29.56424 -29.31821 -27.68155 -24.69968 -23.15018 -22.45689 -22.13864 -20.21133 -18.73129 -17.50873 -16.63931 -16.12555 -15.70329 -15.13235 -14.91546 -14.58961 -14.43952 -13.87212 -13.66861 -13.45678 -13.31749 -12.88576 -12.61271 -12.53788 -11.97993 -11.79753 -11.72279 -11.64198 -11.27633 -11.18107 -11.05141 -10.93172 -10.83261 -10.41192 -10.32182 -10.28002 -10.04688 -9.60528 -8.89017 -8.86745 -8.67122 -8.15596 -7.33150 -6.27013 -3.94685 1.36914 1.43256 3.20660 3.28572 3.33256 3.81281 3.99799 4.19029 4.54767 4.70982 4.97292 5.00206 5.03708 5.11719 5.20594 5.32331 5.49831 5.55928 5.60858 5.83473 5.88845 5.98592 6.02068 6.07667 6.17904 6.22841 6.24724 6.37311 6.38881 6.49885 6.52312 6.55928 6.69233 6.87685 6.95878 7.04494 7.23603 7.63136 8.13058 8.36113 8.59614 9.28432 9.47392 10.12105 10.78377 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030567 B = 0.004683 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.789158 B = 5977.676962 C = 6389.741183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.104 3.896 3 N -0.446 5.446 4 C -0.306 4.306 5 H 0.086 0.914 6 C 0.038 3.962 7 N -0.874 5.874 8 Si 0.916 3.084 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.270 1.270 12 C 0.467 3.533 13 O -0.557 6.557 14 C -0.162 4.162 15 C 0.194 3.806 16 C -0.144 4.144 17 O -0.533 6.533 18 C -0.107 4.107 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.127 4.127 22 C -0.124 4.124 23 C -0.105 4.105 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.102 0.898 28 H 0.045 0.955 29 H 0.266 0.734 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.056 0.944 35 H 0.367 0.633 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.268 -3.456 13.427 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.167 5.167 4 C -0.434 4.434 5 H 0.104 0.896 6 C -0.166 4.166 7 N -0.512 5.512 8 Si 0.742 3.258 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.195 1.195 12 C 0.255 3.745 13 O -0.439 6.439 14 C -0.203 4.203 15 C 0.152 3.848 16 C -0.201 4.201 17 O -0.337 6.337 18 C -0.107 4.107 19 C -0.131 4.131 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.142 4.142 23 C -0.123 4.123 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.120 0.880 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.213 0.787 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.213 -2.428 13.216 14.804 hybrid contribution 0.223 -0.758 -0.693 1.051 sum -5.990 -3.186 12.523 14.242 Atomic orbital electron populations 1.22235 0.98415 1.00246 1.01462 1.21417 0.91446 0.85938 1.03263 1.43450 1.56699 1.11648 1.04867 1.19331 1.34597 0.98419 0.91010 0.89605 1.25398 0.94155 0.96590 1.00468 1.69924 1.29746 1.17679 1.33887 0.86116 0.78938 0.78290 0.82426 1.20323 1.20935 1.19464 1.20106 0.81982 0.88010 0.84429 1.90490 1.48778 1.18312 1.86281 1.22461 1.02859 0.99448 0.95514 1.19632 0.83373 0.93833 0.87915 1.21964 0.96783 0.96204 1.05105 1.86678 1.14744 1.36643 1.95590 1.20818 0.96826 0.96622 0.96463 1.21185 0.97497 0.96131 0.98276 1.21129 1.00090 1.00095 0.92765 1.21125 0.97098 0.98227 0.98076 1.21139 0.98071 0.97147 0.97855 1.21062 0.99832 0.99621 0.91747 0.94012 0.92387 0.93191 0.87979 0.93632 0.92415 0.90072 0.89667 0.93022 0.87833 0.92541 0.78746 0.85699 0.86219 0.86468 0.86309 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 10.15 37.16 0.38 -2.52 16 2 C 0.10 2.22 5.41 -4.04 -0.02 2.19 16 3 N -0.45 -11.16 2.50 -114.81 -0.29 -11.44 16 4 C -0.31 -8.47 8.84 -14.93 -0.13 -8.60 16 5 H 0.09 2.49 7.82 -52.49 -0.41 2.08 16 6 C 0.04 1.00 4.95 -17.47 -0.09 0.92 16 7 N -0.87 -23.77 11.61 55.50 0.64 -23.13 16 8 Si 0.92 20.78 29.59 -169.99 -5.03 15.75 16 9 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 C 0.47 11.16 7.15 -10.99 -0.08 11.09 16 13 O -0.56 -15.16 12.87 -12.72 -0.16 -15.33 16 14 C -0.16 -2.94 2.87 -27.88 -0.08 -3.02 16 15 C 0.19 3.29 0.81 -91.77 -0.07 3.21 16 16 C -0.14 -2.52 8.50 37.16 0.32 -2.21 16 17 O -0.53 -9.81 10.86 -53.50 -0.58 -10.39 16 18 C -0.11 -1.53 4.80 -104.63 -0.50 -2.03 16 19 C -0.11 -1.46 9.14 -39.58 -0.36 -1.82 16 20 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 21 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 22 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 23 C -0.10 -1.38 9.35 -39.58 -0.37 -1.75 16 24 H 0.04 0.67 6.60 -51.93 -0.34 0.33 16 25 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.10 2.43 5.76 -51.93 -0.30 2.13 16 28 H 0.05 0.89 6.66 -51.93 -0.35 0.54 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 30 H 0.08 1.41 7.41 -51.93 -0.38 1.02 16 31 H 0.09 1.37 4.90 -51.93 -0.25 1.12 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 2.19 5.51 -51.92 -0.29 1.90 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.37 5.64 9.04 45.56 0.41 6.05 16 36 H 0.13 1.52 6.17 -52.48 -0.32 1.19 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.13 1.66 7.49 -52.48 -0.39 1.26 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -31.72 323.28 -7.48 -39.19 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.72 Total: 10.34 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.21 Total: -9.86 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.36 Total: -34.57 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.74 Total: -25.72 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.72 -7.48 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272893434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.416 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds