Wall clock time and date at job start Mon Mar 30 2020 01:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47475 * 2 1 4 4 C 1.37095 * 120.00068 * 264.77524 * 3 2 1 5 5 H 1.07995 * 119.99786 * 138.85643 * 4 3 2 6 6 C 1.38948 * 120.00045 * 318.84657 * 4 3 2 7 7 N 1.31414 * 120.00237 * 341.83574 * 6 4 3 8 8 Si 1.86802 * 119.99914 * 161.83111 * 6 4 3 9 9 H 1.48496 * 109.46964 * 90.00656 * 8 6 4 10 10 H 1.48499 * 109.47085 * 210.00047 * 8 6 4 11 11 H 1.48499 * 109.47069 * 330.00284 * 8 6 4 12 12 C 1.34779 * 119.99411 * 84.76713 * 3 2 1 13 13 O 1.21299 * 119.99786 * 179.97438 * 12 3 2 14 14 C 1.50695 * 120.00148 * 0.02562 * 12 3 2 15 15 C 1.53004 * 109.47131 * 179.97438 * 14 12 3 16 16 C 1.52999 * 109.47260 * 59.99440 * 15 14 12 17 17 O 1.42900 * 109.46843 * 299.99665 * 15 14 12 18 18 C 1.50695 * 109.47416 * 179.97438 * 15 14 12 19 19 C 1.38237 * 119.99924 * 329.72397 * 18 15 14 20 20 C 1.38233 * 120.00269 * 179.78658 * 19 18 15 21 21 C 1.38242 * 119.99892 * 0.44370 * 20 19 18 22 22 C 1.38239 * 119.99794 * 359.80911 * 21 20 19 23 23 C 1.38228 * 120.00366 * 149.99708 * 18 15 14 24 24 H 1.09005 * 109.47320 * 299.99982 * 1 2 3 25 25 H 1.09007 * 109.46913 * 59.99468 * 1 2 3 26 26 H 1.08996 * 109.47522 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47002 * 240.00711 * 2 1 3 28 28 H 1.08998 * 109.47450 * 120.00411 * 2 1 3 29 29 H 0.96998 * 120.00543 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47678 * 59.99324 * 14 12 3 31 31 H 1.09000 * 109.47188 * 299.99312 * 14 12 3 32 32 H 1.09002 * 109.47377 * 180.02562 * 16 15 14 33 33 H 1.09008 * 109.46988 * 300.00365 * 16 15 14 34 34 H 1.09001 * 109.47111 * 60.00003 * 16 15 14 35 35 H 0.96699 * 114.00058 * 299.99644 * 17 15 14 36 36 H 1.08007 * 119.99884 * 359.97438 * 19 18 15 37 37 H 1.07996 * 120.00697 * 180.27447 * 20 19 18 38 38 H 1.07993 * 120.00077 * 179.83299 * 21 20 19 39 39 H 1.07997 * 120.00023 * 179.97438 * 22 21 20 40 40 H 1.08009 * 120.00187 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3489 1.9915 -1.1823 5 1 2.0744 3.0219 -1.3533 6 6 3.0371 1.2843 -2.1605 7 7 3.6790 0.1818 -1.8453 8 14 3.0498 1.9007 -3.9239 9 1 4.2054 2.8120 -4.1214 10 1 3.1657 0.7464 -4.8509 11 1 1.7883 2.6335 -4.2012 12 6 2.1426 2.0519 1.1624 13 8 2.5475 3.1954 1.1625 14 6 1.7797 1.3810 2.4620 15 6 2.0117 2.3535 3.6203 16 6 1.1391 3.5951 3.4262 17 8 3.3876 2.7382 3.6508 18 6 1.6482 1.6828 4.9199 19 6 0.6605 0.7160 4.9461 20 6 0.3301 0.0976 6.1374 21 6 0.9810 0.4524 7.3042 22 6 1.9651 1.4229 7.2789 23 6 2.2985 2.0382 6.0867 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 4.1598 -0.3117 -2.5280 30 1 2.4017 0.4966 2.6005 31 1 0.7304 1.0871 2.4386 32 1 1.3046 4.2882 4.2511 33 1 1.4017 4.0804 2.4861 34 1 0.0896 3.3017 3.4028 35 1 3.9999 1.9997 3.7714 36 1 0.1490 0.4417 4.0352 37 1 -0.4385 -0.6609 6.1572 38 1 0.7210 -0.0288 8.2354 39 1 2.4734 1.7005 8.1904 40 1 3.0675 2.7964 6.0669 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272893434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:17 Heat of formation + Delta-G solvation = -74.011118 kcal Electronic energy + Delta-G solvation = -22182.307765 eV Core-core repulsion = 18961.480060 eV Total energy + Delta-G solvation = -3220.827705 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25293 -39.92840 -37.95319 -36.62452 -34.14568 -33.58923 -31.73735 -31.12662 -30.60738 -29.20522 -26.59360 -24.33802 -23.82801 -23.31081 -21.52579 -20.38781 -18.86484 -18.43953 -17.54170 -17.14816 -16.85714 -16.23601 -16.02565 -15.57069 -15.47697 -15.16394 -14.82084 -14.48706 -14.33673 -14.06768 -13.75989 -13.54664 -13.34502 -13.18857 -12.96095 -12.82486 -12.73092 -12.62470 -12.44380 -12.18321 -12.04873 -11.96800 -11.73008 -11.61530 -10.94332 -10.82771 -10.05820 -9.77556 -9.63741 -9.29736 -8.29935 -6.05188 0.44697 0.54306 1.38137 1.40925 1.53112 2.16146 2.32255 2.90098 3.03708 3.06177 3.41347 3.71304 3.83370 4.09496 4.16518 4.21515 4.24596 4.36294 4.39763 4.55066 4.65366 4.69282 4.71709 4.80059 4.86386 4.95649 4.99115 5.07263 5.14440 5.21360 5.32817 5.43895 5.49862 5.57835 5.62342 5.65881 5.73592 6.15172 6.28785 6.63687 6.87387 7.27629 7.56041 8.20073 8.73743 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030567 B = 0.004683 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.789158 B = 5977.676962 C = 6389.741183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.461 5.461 4 C -0.337 4.337 5 H 0.058 0.942 6 C 0.003 3.997 7 N -0.894 5.894 8 Si 0.977 3.023 9 H -0.281 1.281 10 H -0.268 1.268 11 H -0.267 1.267 12 C 0.454 3.546 13 O -0.601 6.601 14 C -0.146 4.146 15 C 0.196 3.804 16 C -0.141 4.141 17 O -0.557 6.557 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.125 4.125 23 C -0.118 4.118 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.271 0.729 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.376 0.624 36 H 0.131 0.869 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.141 0.859 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.659 -5.396 15.058 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 N -0.182 5.182 4 C -0.465 4.465 5 H 0.076 0.924 6 C -0.199 4.199 7 N -0.532 5.532 8 Si 0.801 3.199 9 H -0.207 1.207 10 H -0.192 1.192 11 H -0.191 1.191 12 C 0.244 3.756 13 O -0.486 6.486 14 C -0.186 4.186 15 C 0.155 3.845 16 C -0.198 4.198 17 O -0.362 6.362 18 C -0.120 4.120 19 C -0.141 4.141 20 C -0.140 4.140 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.136 4.136 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.223 0.777 36 H 0.149 0.851 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.617 -4.403 14.856 17.266 hybrid contribution 0.676 -0.157 -1.118 1.316 sum -6.940 -4.560 13.737 16.053 Atomic orbital electron populations 1.22124 0.95282 1.02492 1.01354 1.21514 0.93990 0.83806 1.02782 1.43744 1.56964 1.12908 1.04548 1.19287 1.36144 0.97952 0.93122 0.92392 1.26096 0.93330 0.96691 1.03762 1.69991 1.29808 1.18323 1.35100 0.85200 0.78655 0.78107 0.77954 1.20749 1.19247 1.19098 1.21047 0.80955 0.87616 0.85984 1.90470 1.50495 1.20355 1.87232 1.22369 1.04341 0.99373 0.92485 1.19592 0.82495 0.93317 0.89126 1.21894 0.98142 0.96779 1.03014 1.86642 1.15958 1.37846 1.95776 1.20485 0.98506 0.97947 0.95081 1.21316 0.97244 0.96038 0.99491 1.21464 1.00344 1.00076 0.92138 1.21533 0.95987 0.97379 0.99209 1.21425 0.98204 0.96838 0.97853 1.21104 1.00017 1.00104 0.92366 0.92498 0.94118 0.89673 0.90588 0.91865 0.91967 0.89037 0.87206 0.92435 0.91897 0.90636 0.77682 0.85099 0.83579 0.83484 0.84085 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.13 10.15 71.98 0.73 -4.40 16 2 C 0.10 4.33 5.41 86.38 0.47 4.80 16 3 N -0.46 -23.58 2.50 -635.54 -1.59 -25.17 16 4 C -0.34 -19.34 8.84 84.04 0.74 -18.60 16 5 H 0.06 3.56 7.82 -2.91 -0.02 3.54 16 6 C 0.00 0.18 4.95 84.93 0.42 0.60 16 7 N -0.89 -49.11 11.61 21.66 0.25 -48.85 16 8 Si 0.98 43.22 29.59 68.60 2.03 45.25 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 10 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 C 0.45 22.29 7.15 87.66 0.63 22.91 16 13 O -0.60 -34.39 12.87 14.38 0.19 -34.20 16 14 C -0.15 -5.18 2.87 29.85 0.09 -5.10 16 15 C 0.20 6.62 0.81 -11.54 -0.01 6.61 16 16 C -0.14 -5.05 8.50 71.98 0.61 -4.44 16 17 O -0.56 -21.09 10.86 -131.52 -1.43 -22.52 16 18 C -0.12 -3.24 4.80 -19.87 -0.10 -3.34 16 19 C -0.12 -2.83 9.14 22.27 0.20 -2.62 16 20 C -0.12 -2.27 10.05 22.27 0.22 -2.04 16 21 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 22 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 23 C -0.12 -2.93 9.35 22.27 0.21 -2.72 16 24 H 0.06 1.70 6.60 -2.38 -0.02 1.68 16 25 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 26 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.08 3.63 5.76 -2.39 -0.01 3.61 16 28 H 0.06 2.39 6.66 -2.39 -0.02 2.37 16 29 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 30 H 0.09 3.07 7.41 -2.39 -0.02 3.05 16 31 H 0.11 3.33 4.90 -2.39 -0.01 3.31 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.06 2.79 5.51 -2.38 -0.01 2.78 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 35 H 0.38 11.91 9.04 -74.06 -0.67 11.24 16 36 H 0.13 2.76 6.17 -2.91 -0.02 2.74 16 37 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.12 3.09 7.49 -2.91 -0.02 3.07 16 Total: -1.00 -71.57 323.28 4.49 -67.08 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.38 Total: 30.90 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 4.66 Total: -12.48 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -1.34 Total: -74.02 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -1.24 Total: -56.72 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -71.57 4.49 -67.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272893434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.929 kcal (2) G-P(sol) polarization free energy of solvation -71.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds