Wall clock time and date at job start Mon Mar 30 2020 01:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46742 * 2 1 4 4 C 1.37098 * 120.00114 * 264.98733 * 3 2 1 5 5 H 1.08000 * 119.99842 * 141.70229 * 4 3 2 6 6 C 1.38952 * 120.00056 * 321.70179 * 4 3 2 7 7 N 1.31408 * 119.99821 * 339.46263 * 6 4 3 8 8 Si 1.86798 * 119.99852 * 159.46699 * 6 4 3 9 9 H 1.48498 * 109.47375 * 90.00135 * 8 6 4 10 10 H 1.48502 * 109.47001 * 210.00047 * 8 6 4 11 11 H 1.48494 * 109.47021 * 329.99909 * 8 6 4 12 12 C 1.34781 * 120.00001 * 84.99510 * 3 2 1 13 13 O 1.21285 * 119.99877 * 179.97438 * 12 3 2 14 14 C 1.50699 * 119.99923 * 359.97438 * 12 3 2 15 15 C 1.52996 * 109.47124 * 182.77047 * 14 12 3 16 16 C 1.53000 * 109.46956 * 176.53613 * 15 14 12 17 17 O 1.42897 * 109.47230 * 296.53102 * 15 14 12 18 18 C 1.50699 * 109.47204 * 56.53665 * 15 14 12 19 19 C 1.38235 * 119.99855 * 209.99883 * 18 15 14 20 20 C 1.38238 * 119.99961 * 180.02562 * 19 18 15 21 21 C 1.38229 * 119.99647 * 359.96051 * 20 19 18 22 22 C 1.38232 * 120.00523 * 0.27750 * 21 20 19 23 23 C 1.38232 * 120.00141 * 30.02031 * 18 15 14 24 24 H 1.09002 * 109.46828 * 299.99508 * 1 2 3 25 25 H 1.08998 * 109.47308 * 59.99350 * 1 2 3 26 26 H 1.08997 * 109.47332 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46828 * 240.00492 * 2 1 3 28 28 H 1.08995 * 109.47211 * 120.00125 * 2 1 3 29 29 H 0.97003 * 120.00095 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47341 * 62.77007 * 14 12 3 31 31 H 1.09006 * 109.46998 * 302.77044 * 14 12 3 32 32 H 1.09000 * 109.47359 * 304.35655 * 16 15 14 33 33 H 1.08995 * 109.47352 * 64.35877 * 16 15 14 34 34 H 1.09008 * 109.47010 * 184.35604 * 16 15 14 35 35 H 0.96708 * 113.99848 * 59.99952 * 17 15 14 36 36 H 1.07998 * 120.00154 * 0.02562 * 19 18 15 37 37 H 1.08000 * 119.99914 * 179.97438 * 20 19 18 38 38 H 1.08004 * 119.99965 * 180.02562 * 21 20 19 39 39 H 1.08003 * 120.00467 * 179.73169 * 22 21 20 40 40 H 1.08005 * 119.99552 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3446 1.9930 -1.1828 5 1 2.1103 3.0364 -1.3336 6 6 2.9767 1.2705 -2.1874 7 7 3.6182 0.1616 -1.8950 8 14 2.9147 1.8759 -3.9535 9 1 4.0717 2.7704 -4.2111 10 1 2.9717 0.7145 -4.8771 11 1 1.6515 2.6240 -4.1762 12 6 2.1469 2.0505 1.1628 13 8 2.5515 3.1939 1.1628 14 6 1.7879 1.3782 2.4628 15 6 1.9578 2.3711 3.6144 16 6 1.5112 1.7158 4.9228 17 8 3.3314 2.7514 3.7167 18 6 1.1163 3.5935 3.3520 19 6 1.5165 4.8250 3.8360 20 6 0.7444 5.9462 3.5958 21 6 -0.4275 5.8359 2.8710 22 6 -0.8302 4.6037 2.3912 23 6 -0.0559 3.4832 2.6278 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 4.0592 -0.3430 -2.5963 30 1 2.4430 0.5217 2.6220 31 1 0.7520 1.0411 2.4236 32 1 0.4876 1.3563 4.8183 33 1 2.1690 0.8776 5.1524 34 1 1.5590 2.4468 5.7301 35 1 3.6828 3.1742 2.9211 36 1 2.4324 4.9112 4.4017 37 1 1.0569 6.9082 3.9742 38 1 -1.0305 6.7119 2.6829 39 1 -1.7480 4.5168 1.8286 40 1 -0.3690 2.5209 2.2504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272893435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:19 Heat of formation + Delta-G solvation = -58.400414 kcal Electronic energy + Delta-G solvation = -22719.230045 eV Core-core repulsion = 19499.079271 eV Total energy + Delta-G solvation = -3220.150774 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.95644 -38.15577 -36.51094 -34.80907 -32.54136 -31.91264 -30.46302 -29.49093 -29.34286 -27.87470 -24.72267 -22.91874 -22.25282 -22.01589 -20.13767 -18.73324 -17.30789 -16.81500 -16.11905 -15.69344 -15.05130 -14.85153 -14.53989 -14.13262 -13.97064 -13.57823 -13.37781 -13.07259 -12.86905 -12.44470 -12.22958 -12.14732 -11.90095 -11.80358 -11.65772 -11.32363 -11.15554 -11.09427 -10.97754 -10.80638 -10.41336 -10.37112 -10.29300 -10.12372 -9.55283 -8.93953 -8.55601 -8.47571 -8.10769 -7.45540 -6.34330 -3.98664 1.79147 1.84121 3.15895 3.24723 3.29807 3.89626 4.14268 4.20730 4.66838 4.75715 4.99819 5.01087 5.24208 5.32895 5.37917 5.44617 5.51712 5.72140 5.84519 5.86317 5.92418 5.93682 6.01572 6.13123 6.18219 6.23099 6.32930 6.37947 6.41777 6.44714 6.52840 6.83843 6.86755 6.88862 7.03497 7.19667 7.42133 7.57723 8.20844 8.28360 8.50278 9.18799 9.40208 10.00497 10.70461 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019668 B = 0.006214 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.261230 B = 4504.925272 C = 4923.987666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.099 3.901 3 N -0.438 5.438 4 C -0.308 4.308 5 H 0.089 0.911 6 C 0.038 3.962 7 N -0.870 5.870 8 Si 0.915 3.085 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.270 1.270 12 C 0.463 3.537 13 O -0.575 6.575 14 C -0.167 4.167 15 C 0.189 3.811 16 C -0.133 4.133 17 O -0.564 6.564 18 C -0.072 4.072 19 C -0.101 4.101 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.120 4.120 23 C -0.105 4.105 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.106 0.894 28 H 0.048 0.952 29 H 0.267 0.733 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.392 0.608 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.616 1.430 9.128 11.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.025 4.025 3 N -0.156 5.156 4 C -0.435 4.435 5 H 0.106 0.894 6 C -0.166 4.166 7 N -0.508 5.508 8 Si 0.741 3.259 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.195 1.195 12 C 0.252 3.748 13 O -0.460 6.460 14 C -0.207 4.207 15 C 0.148 3.852 16 C -0.191 4.191 17 O -0.375 6.375 18 C -0.072 4.072 19 C -0.119 4.119 20 C -0.142 4.142 21 C -0.148 4.148 22 C -0.138 4.138 23 C -0.124 4.124 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.124 0.876 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.246 0.754 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.364 1.578 9.572 12.179 hybrid contribution 0.042 0.260 -1.700 1.721 sum -7.321 1.838 7.871 10.906 Atomic orbital electron populations 1.22225 0.98276 1.00387 1.01416 1.21499 0.91606 0.85734 1.03673 1.43443 1.55706 1.11610 1.04877 1.19365 1.37066 0.97106 0.90012 0.89369 1.25365 0.94205 0.96563 1.00495 1.69941 1.30269 1.17064 1.33494 0.86128 0.79011 0.78330 0.82404 1.20294 1.20832 1.19453 1.20188 0.82192 0.87800 0.84670 1.90452 1.50662 1.18508 1.86388 1.22515 1.03106 1.00105 0.94977 1.19620 0.81832 0.89952 0.93811 1.21746 1.00977 1.00769 0.95572 1.86288 1.24125 1.82003 1.45078 1.20269 0.94966 0.95507 0.96451 1.20847 0.99255 0.91995 0.99842 1.21012 0.95401 0.98082 0.99741 1.20990 0.97258 0.97168 0.99419 1.20996 0.99784 0.92959 1.00094 1.20952 0.94911 0.98622 0.97866 0.94044 0.92377 0.93029 0.87596 0.93371 0.92282 0.89212 0.89657 0.91373 0.91570 0.91923 0.75412 0.86094 0.86768 0.86894 0.86743 0.86711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 10.13 37.16 0.38 -2.48 16 2 C 0.10 2.10 5.41 -4.04 -0.02 2.07 16 3 N -0.44 -10.72 2.52 -114.81 -0.29 -11.01 16 4 C -0.31 -8.38 8.89 -14.93 -0.13 -8.52 16 5 H 0.09 2.54 7.78 -52.49 -0.41 2.13 16 6 C 0.04 1.00 4.92 -17.47 -0.09 0.91 16 7 N -0.87 -23.31 11.54 55.50 0.64 -22.67 16 8 Si 0.91 20.55 29.60 -169.99 -5.03 15.52 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.46 10.73 6.39 -10.98 -0.07 10.66 16 13 O -0.58 -14.84 12.60 -11.22 -0.14 -14.99 16 14 C -0.17 -3.03 3.02 -27.89 -0.08 -3.11 16 15 C 0.19 3.24 0.95 -91.77 -0.09 3.16 16 16 C -0.13 -1.82 8.82 37.16 0.33 -1.49 16 17 O -0.56 -10.68 11.95 -52.00 -0.62 -11.31 16 18 C -0.07 -1.25 3.13 -104.63 -0.33 -1.58 16 19 C -0.10 -1.71 9.35 -39.58 -0.37 -2.08 16 20 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 21 C -0.13 -1.95 10.05 -39.59 -0.40 -2.35 16 22 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 23 C -0.11 -1.82 8.29 -39.58 -0.33 -2.15 16 24 H 0.04 0.66 6.58 -51.93 -0.34 0.32 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.11 2.50 5.62 -51.93 -0.29 2.20 16 28 H 0.05 0.93 6.73 -51.93 -0.35 0.58 16 29 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 30 H 0.09 1.60 7.55 -51.93 -0.39 1.21 16 31 H 0.09 1.37 5.02 -51.93 -0.26 1.11 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 35 H 0.39 8.10 6.74 45.56 0.31 8.41 16 36 H 0.12 1.94 7.48 -52.49 -0.39 1.55 16 37 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 39 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 40 H 0.11 1.91 6.21 -52.48 -0.33 1.58 16 LS Contribution 321.88 15.07 4.85 4.85 Total: -1.00 -30.07 321.88 -7.56 -37.63 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -4.97 Total: 13.53 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -2.00 Total: -11.56 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.35 Total: -33.68 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.76 Total: -26.29 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.07 -7.56 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272893435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.770 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds