Wall clock time and date at job start Mon Mar 30 2020 01:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46742 * 2 1 4 4 C 1.37098 * 120.00114 * 264.98733 * 3 2 1 5 5 H 1.08000 * 119.99842 * 141.70229 * 4 3 2 6 6 C 1.38952 * 120.00056 * 321.70179 * 4 3 2 7 7 N 1.31408 * 119.99821 * 339.46263 * 6 4 3 8 8 Si 1.86798 * 119.99852 * 159.46699 * 6 4 3 9 9 H 1.48498 * 109.47375 * 90.00135 * 8 6 4 10 10 H 1.48502 * 109.47001 * 210.00047 * 8 6 4 11 11 H 1.48494 * 109.47021 * 329.99909 * 8 6 4 12 12 C 1.34781 * 120.00001 * 84.99510 * 3 2 1 13 13 O 1.21285 * 119.99877 * 179.97438 * 12 3 2 14 14 C 1.50699 * 119.99923 * 359.97438 * 12 3 2 15 15 C 1.52996 * 109.47124 * 182.77047 * 14 12 3 16 16 C 1.53000 * 109.46956 * 176.53613 * 15 14 12 17 17 O 1.42897 * 109.47230 * 296.53102 * 15 14 12 18 18 C 1.50699 * 109.47204 * 56.53665 * 15 14 12 19 19 C 1.38235 * 119.99855 * 209.99883 * 18 15 14 20 20 C 1.38238 * 119.99961 * 180.02562 * 19 18 15 21 21 C 1.38229 * 119.99647 * 359.96051 * 20 19 18 22 22 C 1.38232 * 120.00523 * 0.27750 * 21 20 19 23 23 C 1.38232 * 120.00141 * 30.02031 * 18 15 14 24 24 H 1.09002 * 109.46828 * 299.99508 * 1 2 3 25 25 H 1.08998 * 109.47308 * 59.99350 * 1 2 3 26 26 H 1.08997 * 109.47332 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46828 * 240.00492 * 2 1 3 28 28 H 1.08995 * 109.47211 * 120.00125 * 2 1 3 29 29 H 0.97003 * 120.00095 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47341 * 62.77007 * 14 12 3 31 31 H 1.09006 * 109.46998 * 302.77044 * 14 12 3 32 32 H 1.09000 * 109.47359 * 304.35655 * 16 15 14 33 33 H 1.08995 * 109.47352 * 64.35877 * 16 15 14 34 34 H 1.09008 * 109.47010 * 184.35604 * 16 15 14 35 35 H 0.96708 * 113.99848 * 59.99952 * 17 15 14 36 36 H 1.07998 * 120.00154 * 0.02562 * 19 18 15 37 37 H 1.08000 * 119.99914 * 179.97438 * 20 19 18 38 38 H 1.08004 * 119.99965 * 180.02562 * 21 20 19 39 39 H 1.08003 * 120.00467 * 179.73169 * 22 21 20 40 40 H 1.08005 * 119.99552 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3446 1.9930 -1.1828 5 1 2.1103 3.0364 -1.3336 6 6 2.9767 1.2705 -2.1874 7 7 3.6182 0.1616 -1.8950 8 14 2.9147 1.8759 -3.9535 9 1 4.0717 2.7704 -4.2111 10 1 2.9717 0.7145 -4.8771 11 1 1.6515 2.6240 -4.1762 12 6 2.1469 2.0505 1.1628 13 8 2.5515 3.1939 1.1628 14 6 1.7879 1.3782 2.4628 15 6 1.9578 2.3711 3.6144 16 6 1.5112 1.7158 4.9228 17 8 3.3314 2.7514 3.7167 18 6 1.1163 3.5935 3.3520 19 6 1.5165 4.8250 3.8360 20 6 0.7444 5.9462 3.5958 21 6 -0.4275 5.8359 2.8710 22 6 -0.8302 4.6037 2.3912 23 6 -0.0559 3.4832 2.6278 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 4.0592 -0.3430 -2.5963 30 1 2.4430 0.5217 2.6220 31 1 0.7520 1.0411 2.4236 32 1 0.4876 1.3563 4.8183 33 1 2.1690 0.8776 5.1524 34 1 1.5590 2.4468 5.7301 35 1 3.6828 3.1742 2.9211 36 1 2.4324 4.9112 4.4017 37 1 1.0569 6.9082 3.9742 38 1 -1.0305 6.7119 2.6829 39 1 -1.7480 4.5168 1.8286 40 1 -0.3690 2.5209 2.2504 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272893435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:19 Heat of formation + Delta-G solvation = -75.818337 kcal Electronic energy + Delta-G solvation = -22719.985342 eV Core-core repulsion = 19499.079271 eV Total energy + Delta-G solvation = -3220.906071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.41925 -39.70519 -37.93614 -36.62605 -34.20349 -33.55056 -31.69291 -31.14293 -30.62546 -29.27986 -26.58347 -24.22615 -23.81785 -23.27016 -21.58458 -20.38398 -18.70354 -18.61104 -17.76775 -17.13696 -16.86184 -16.32758 -16.08026 -15.56736 -15.41856 -15.03822 -14.88247 -14.53339 -14.23548 -13.87047 -13.73155 -13.57448 -13.23184 -13.21387 -12.99673 -12.89234 -12.70534 -12.65647 -12.58134 -12.22962 -12.09655 -12.05135 -11.78606 -11.61633 -10.98061 -10.81981 -10.29289 -9.71528 -9.48771 -9.33653 -8.32947 -6.04441 0.56703 0.59960 1.35820 1.39995 1.51745 2.10796 2.29976 2.96466 3.03569 3.08835 3.32065 3.73132 3.88248 3.98795 4.11986 4.19666 4.27110 4.36133 4.43013 4.61805 4.66688 4.69373 4.72218 4.77920 4.86465 4.94546 4.98328 5.06462 5.19909 5.22228 5.28847 5.31759 5.47635 5.56436 5.64249 5.67431 5.76394 6.21860 6.24771 6.56597 6.69567 7.23197 7.53252 8.13258 8.70258 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019668 B = 0.006214 C = 0.005685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.261230 B = 4504.925272 C = 4923.987666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.097 3.903 3 N -0.454 5.454 4 C -0.334 4.334 5 H 0.060 0.940 6 C 0.004 3.996 7 N -0.891 5.891 8 Si 0.974 3.026 9 H -0.281 1.281 10 H -0.268 1.268 11 H -0.268 1.268 12 C 0.457 3.543 13 O -0.609 6.609 14 C -0.154 4.154 15 C 0.183 3.817 16 C -0.128 4.128 17 O -0.571 6.571 18 C -0.085 4.085 19 C -0.121 4.121 20 C -0.128 4.128 21 C -0.134 4.134 22 C -0.131 4.131 23 C -0.126 4.126 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.272 0.728 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.381 0.619 36 H 0.120 0.880 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.134 0.866 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 1.094 9.623 13.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.026 4.026 3 N -0.173 5.173 4 C -0.463 4.463 5 H 0.078 0.922 6 C -0.198 4.198 7 N -0.529 5.529 8 Si 0.798 3.202 9 H -0.207 1.207 10 H -0.193 1.193 11 H -0.192 1.192 12 C 0.247 3.753 13 O -0.495 6.495 14 C -0.194 4.194 15 C 0.141 3.859 16 C -0.185 4.185 17 O -0.381 6.381 18 C -0.086 4.086 19 C -0.139 4.139 20 C -0.146 4.146 21 C -0.152 4.152 22 C -0.149 4.149 23 C -0.144 4.144 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.233 0.767 36 H 0.138 0.862 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.152 0.848 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.823 1.212 10.087 13.456 hybrid contribution 0.506 0.408 -1.819 1.932 sum -8.317 1.619 8.268 11.838 Atomic orbital electron populations 1.22116 0.95250 1.02515 1.01313 1.21584 0.94075 0.83839 1.03109 1.43696 1.56232 1.12770 1.04579 1.19262 1.38461 0.96465 0.92081 0.92215 1.26033 0.93483 0.96686 1.03630 1.70005 1.30466 1.17764 1.34630 0.85241 0.78652 0.78134 0.78157 1.20687 1.19301 1.19248 1.20965 0.81054 0.87435 0.85889 1.90424 1.51792 1.20150 1.87167 1.22463 1.04534 0.99989 0.92433 1.19916 0.80890 0.89968 0.95079 1.21765 1.02323 1.00870 0.93587 1.86288 1.25543 1.81910 1.44324 1.20371 0.95298 0.95884 0.97026 1.21019 0.99737 0.92586 1.00603 1.21368 0.95252 0.98721 0.99278 1.21376 0.97344 0.97933 0.98574 1.21343 1.00421 0.93038 1.00070 1.21106 0.95408 0.99338 0.98515 0.92534 0.94063 0.89719 0.90197 0.91795 0.91886 0.88655 0.87156 0.89151 0.90720 0.91468 0.76724 0.86216 0.84263 0.83997 0.84835 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 10.13 71.98 0.73 -4.32 16 2 C 0.10 4.05 5.41 86.38 0.47 4.52 16 3 N -0.45 -22.48 2.52 -635.53 -1.60 -24.08 16 4 C -0.33 -18.69 8.89 84.04 0.75 -17.95 16 5 H 0.06 3.60 7.78 -2.91 -0.02 3.58 16 6 C 0.00 0.21 4.92 84.93 0.42 0.63 16 7 N -0.89 -48.08 11.54 21.66 0.25 -47.83 16 8 Si 0.97 42.48 29.60 68.60 2.03 44.51 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 12 C 0.46 21.34 6.39 87.66 0.56 21.90 16 13 O -0.61 -32.27 12.60 12.99 0.16 -32.10 16 14 C -0.15 -5.43 3.02 29.85 0.09 -5.34 16 15 C 0.18 6.09 0.95 -11.54 -0.01 6.08 16 16 C -0.13 -3.22 8.82 71.98 0.64 -2.59 16 17 O -0.57 -21.77 11.95 -132.95 -1.59 -23.36 16 18 C -0.09 -2.95 3.13 -19.87 -0.06 -3.01 16 19 C -0.12 -4.04 9.35 22.27 0.21 -3.83 16 20 C -0.13 -3.75 10.05 22.27 0.22 -3.52 16 21 C -0.13 -3.77 10.05 22.27 0.22 -3.55 16 22 C -0.13 -3.97 10.05 22.27 0.22 -3.74 16 23 C -0.13 -4.21 8.29 22.27 0.18 -4.03 16 24 H 0.06 1.66 6.58 -2.39 -0.02 1.65 16 25 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 27 H 0.08 3.77 5.62 -2.39 -0.01 3.76 16 28 H 0.06 2.40 6.73 -2.39 -0.02 2.38 16 29 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 30 H 0.10 3.26 7.55 -2.39 -0.02 3.24 16 31 H 0.11 3.30 5.02 -2.38 -0.01 3.29 16 32 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.38 16.29 6.74 -74.05 -0.50 15.79 16 36 H 0.12 3.88 7.48 -2.91 -0.02 3.85 16 37 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 38 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 39 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 40 H 0.12 3.71 6.21 -2.91 -0.02 3.69 16 Total: -1.00 -66.13 321.88 4.43 -61.70 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: 0.55 Total: 39.92 kcal Atomic # 6 Polarization: -23.39 SS G_CDS: 4.64 Total: -18.75 kcal Atomic # 7 Polarization: -70.55 SS G_CDS: -1.35 Total: -71.91 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -1.43 Total: -55.46 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -66.13 4.43 -61.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272893435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.120 kcal (2) G-P(sol) polarization free energy of solvation -66.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds