Wall clock time and date at job start Mon Mar 30 2020 01:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47312 * 2 1 4 4 C 1.42898 * 113.99874 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47259 * 30.00319 * 4 3 2 6 6 C 1.50699 * 109.46964 * 150.00106 * 4 3 2 7 7 O 1.21280 * 119.99966 * 5.00002 * 6 4 3 8 8 N 1.34774 * 120.00093 * 184.99640 * 6 4 3 9 9 C 1.46500 * 120.00022 * 180.02562 * 8 6 4 10 10 C 1.53001 * 109.47078 * 180.02562 * 9 8 6 11 11 C 1.50699 * 109.47149 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99969 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00065 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99984 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00070 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46982 * 60.00856 * 15 13 11 17 17 H 1.48503 * 109.47337 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47263 * 300.00955 * 15 13 11 19 19 C 1.50703 * 109.47171 * 270.00168 * 4 3 2 20 20 C 1.38236 * 119.99787 * 324.72807 * 19 4 3 21 21 C 1.38241 * 119.99636 * 179.81278 * 20 19 4 22 22 C 1.38234 * 120.00115 * 0.39672 * 21 20 19 23 23 C 1.38240 * 119.99714 * 359.85290 * 22 21 20 24 24 C 1.38228 * 120.00011 * 145.00451 * 19 4 3 25 25 H 1.08997 * 109.47288 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46662 * 299.99956 * 1 2 3 27 27 H 1.08997 * 109.47257 * 59.99492 * 1 2 3 28 28 H 1.09002 * 109.47156 * 239.99911 * 2 1 3 29 29 H 1.08997 * 109.47257 * 120.00508 * 2 1 3 30 30 H 0.96999 * 119.99866 * 0.02562 * 8 6 4 31 31 H 1.08999 * 109.47229 * 300.00134 * 9 8 6 32 32 H 1.08996 * 109.47573 * 60.00199 * 9 8 6 33 33 H 1.09008 * 109.46996 * 299.99836 * 10 9 8 34 34 H 1.08997 * 109.47507 * 59.99882 * 10 9 8 35 35 H 0.96998 * 120.00209 * 179.97438 * 14 13 11 36 36 H 1.07996 * 120.00216 * 359.97438 * 20 19 4 37 37 H 1.08000 * 119.99857 * 180.22806 * 21 20 19 38 38 H 1.07998 * 120.00030 * 179.84064 * 22 21 20 39 39 H 1.08003 * 119.99655 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.00508 * 359.97379 * 24 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6014 -0.5130 6 6 3.8349 2.7262 -0.7098 7 8 2.9866 3.5046 -1.0912 8 7 5.1388 2.9937 -0.9212 9 6 5.5315 4.2248 -1.6114 10 6 7.0564 4.2838 -1.7211 11 6 7.4603 5.5499 -2.4316 12 1 6.7050 6.2434 -2.7705 13 6 8.7942 5.8235 -2.6480 14 7 9.7141 4.9792 -2.2348 15 14 9.2949 7.3926 -3.5293 16 1 8.8075 8.5676 -2.7631 17 1 10.7750 7.4499 -3.6357 18 1 8.7002 7.4075 -4.8899 19 6 3.9311 1.4998 1.4216 20 6 3.1872 2.1346 2.3987 21 6 3.6442 2.1677 3.7029 22 6 4.8490 1.5733 4.0285 23 6 5.5953 0.9430 3.0504 24 6 5.1365 0.9066 1.7469 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.8172 2.3710 -0.6165 31 1 5.0949 4.2366 -2.6101 32 1 5.1738 5.0869 -1.0484 33 1 7.4933 4.2718 -0.7225 34 1 7.4137 3.4218 -2.2844 35 1 10.6525 5.1715 -2.3874 36 1 2.2478 2.6023 2.1436 37 1 3.0612 2.6605 4.4670 38 1 5.2072 1.6014 5.0470 39 1 6.5368 0.4789 3.3047 40 1 5.7197 0.4142 0.9828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272969516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:10 Heat of formation + Delta-G solvation = -71.274952 kcal Electronic energy + Delta-G solvation = -21095.052216 eV Core-core repulsion = 17874.343161 eV Total energy + Delta-G solvation = -3220.709055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.22031 -38.59146 -37.54525 -34.82170 -33.02514 -32.48851 -31.02875 -30.70429 -29.65710 -26.91466 -24.50764 -23.13871 -22.50521 -21.91876 -20.96093 -20.08426 -17.47203 -16.93786 -16.84583 -16.31129 -15.91642 -15.12828 -14.95854 -14.69685 -14.55319 -14.50171 -13.82812 -13.45930 -13.43882 -13.00546 -12.69511 -12.55799 -12.37032 -12.27515 -11.98876 -11.41961 -11.22323 -11.19964 -11.02841 -11.00350 -10.65699 -10.31861 -10.04377 -9.73910 -9.47511 -9.25920 -8.97297 -8.71323 -8.53539 -8.34865 -6.09020 -4.11837 1.19331 1.35412 2.92977 3.08526 3.31776 3.35396 3.39214 3.66094 4.15685 4.43033 4.53095 4.75885 4.90393 4.93629 4.96253 5.05119 5.12349 5.18071 5.22472 5.28017 5.40510 5.47736 5.57254 5.75325 5.84783 5.95344 5.98949 6.32232 6.35132 6.36693 6.43841 6.45424 6.73648 6.87744 6.91406 7.02861 7.51786 7.61744 7.89032 7.98755 8.27981 8.62931 8.93773 9.52885 11.02557 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018958 B = 0.003988 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.567011 B = 7019.053619 C = 7987.405674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.350 6.350 4 C 0.115 3.885 5 H 0.091 0.909 6 C 0.513 3.487 7 O -0.527 6.527 8 N -0.716 5.716 9 C 0.123 3.877 10 C 0.014 3.986 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.060 3.940 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.113 4.113 20 C -0.087 4.087 21 C -0.123 4.123 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.108 4.108 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.396 0.604 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.023 0.977 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.884 -13.504 10.641 20.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.267 6.267 4 C 0.054 3.946 5 H 0.109 0.891 6 C 0.296 3.704 7 O -0.403 6.403 8 N -0.368 5.368 9 C 0.001 3.999 10 C -0.024 4.024 11 C -0.561 4.561 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.114 4.114 20 C -0.105 4.105 21 C -0.141 4.141 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.126 4.126 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.230 0.770 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.440 -12.784 10.346 20.621 hybrid contribution 0.991 0.281 -0.263 1.063 sum -11.449 -12.502 10.083 19.725 Atomic orbital electron populations 1.21714 0.93460 1.02069 1.03393 1.22596 0.95868 0.83720 1.00136 1.88050 1.17841 1.26173 1.94674 1.20734 0.83601 0.97822 0.92487 0.89082 1.20021 0.83408 0.87054 0.79904 1.90693 1.50301 1.48561 1.50699 1.46212 1.06100 1.25228 1.59236 1.21752 0.99138 0.83622 0.95348 1.19317 0.87204 0.98034 0.97831 1.21013 0.92099 1.05350 1.37616 0.92278 1.24986 0.96564 0.96989 0.95676 1.69942 1.00691 1.36127 1.46560 0.86571 0.77256 0.83452 0.80255 1.20096 1.21244 1.20095 1.20074 0.96126 1.00378 0.94833 1.21027 0.99900 0.97154 0.92392 1.21170 0.96635 0.99918 0.96389 1.21206 0.94941 0.97759 0.99446 1.21109 0.99825 0.99812 0.92930 1.21025 0.95239 0.99372 0.96993 0.91148 0.91808 0.91615 0.93203 0.93220 0.77020 0.92423 0.92483 0.95900 0.95938 0.92798 0.85352 0.85987 0.86075 0.85722 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.56 6.46 37.16 0.24 0.80 16 3 O -0.35 -5.04 8.68 -55.09 -0.48 -5.51 16 4 C 0.12 1.61 2.73 -29.03 -0.08 1.53 16 5 H 0.09 1.03 7.70 -51.93 -0.40 0.63 16 6 C 0.51 9.32 7.17 -10.99 -0.08 9.24 16 7 O -0.53 -11.72 16.51 -14.30 -0.24 -11.96 16 8 N -0.72 -12.97 5.51 -60.30 -0.33 -13.30 16 9 C 0.12 2.68 5.61 -4.04 -0.02 2.66 16 10 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 11 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 15 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 C -0.11 -1.47 4.91 -104.62 -0.51 -1.99 16 20 C -0.09 -1.14 9.35 -39.58 -0.37 -1.51 16 21 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 23 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 24 C -0.11 -1.23 9.52 -39.59 -0.38 -1.61 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.40 6.23 8.31 -40.82 -0.34 5.89 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.13 1.75 7.64 -52.49 -0.40 1.35 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 38 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 40 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -32.98 345.80 -8.86 -41.83 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.17 Total: 2.65 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.56 Total: -9.97 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.40 Total: -38.69 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.71 Total: -17.47 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.98 -8.86 -41.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272969516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.441 kcal (2) G-P(sol) polarization free energy of solvation -32.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds