Wall clock time and date at job start Mon Mar 30 2020 01:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45192 * 109.47233 * 2 1 4 4 C 1.34233 * 116.99940 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99909 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99853 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47286 * 59.99591 * 6 4 3 8 8 N 1.46896 * 109.47169 * 179.97438 * 6 4 3 9 9 C 1.46897 * 111.00314 * 204.99914 * 8 6 4 10 10 C 1.52994 * 109.47430 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47045 * 180.02562 * 10 9 8 12 12 H 1.07993 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99701 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99711 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00302 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47280 * 90.00223 * 15 13 11 17 17 H 1.48496 * 109.47524 * 210.00647 * 15 13 11 18 18 H 1.48507 * 109.47033 * 330.00451 * 15 13 11 19 19 C 1.50703 * 109.46901 * 300.00187 * 6 4 3 20 20 C 1.38235 * 120.00292 * 100.00039 * 19 6 4 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 6 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 279.97332 * 19 6 4 25 25 H 1.08991 * 109.47249 * 59.99856 * 1 2 3 26 26 H 1.09009 * 109.47343 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47009 * 299.99776 * 1 2 3 28 28 H 1.09006 * 109.46597 * 239.99918 * 2 1 3 29 29 H 1.09000 * 109.47430 * 120.00331 * 2 1 3 30 30 H 1.00904 * 110.99577 * 81.04420 * 8 6 4 31 31 H 1.09000 * 109.46944 * 300.00492 * 9 8 6 32 32 H 1.09000 * 109.46941 * 59.99682 * 9 8 6 33 33 H 1.09000 * 109.47550 * 300.00232 * 10 9 8 34 34 H 1.09001 * 109.46830 * 60.00323 * 10 9 8 35 35 H 0.97005 * 119.99742 * 179.97438 * 14 13 11 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 6 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5852 3.4690 0.8904 8 7 5.3877 2.8605 -0.0001 9 6 5.9786 4.0739 0.5799 10 6 7.5039 3.9566 0.5631 11 6 8.1100 5.2012 1.1587 12 1 7.4712 5.9961 1.5141 13 6 9.4802 5.3250 1.2499 14 7 10.0091 6.4109 1.7702 15 14 10.5852 3.9499 0.6359 16 1 10.9091 4.1768 -0.7955 17 1 11.8397 3.9307 1.4302 18 1 9.8853 2.6486 0.7846 19 6 3.4556 3.6738 -1.2298 20 6 2.4061 4.5693 -1.1437 21 6 1.9799 5.2451 -2.2716 22 6 2.6037 5.0262 -3.4856 23 6 3.6542 4.1317 -3.5715 24 6 4.0790 3.4541 -2.4439 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 5.7410 2.6955 -0.9308 31 1 5.6740 4.9417 -0.0051 32 1 5.6347 4.1898 1.6077 33 1 7.8082 3.0889 1.1484 34 1 7.8481 3.8405 -0.4646 35 1 10.9731 6.4979 1.8347 36 1 1.9192 4.7408 -0.1950 37 1 1.1596 5.9445 -2.2045 38 1 2.2679 5.5509 -4.3678 39 1 4.1414 3.9603 -4.5200 40 1 4.8990 2.7545 -2.5113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272991865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:28 Heat of formation + Delta-G solvation = -62.753440 kcal Electronic energy + Delta-G solvation = -21226.599160 eV Core-core repulsion = 18006.259625 eV Total energy + Delta-G solvation = -3220.339535 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.65126 -39.23561 -36.86898 -35.84136 -33.26552 -32.01104 -31.42632 -30.98462 -29.38259 -26.84680 -24.00022 -23.31357 -22.52065 -22.05039 -20.49823 -20.36470 -17.74888 -17.21933 -16.74195 -16.54546 -16.30543 -15.49314 -15.10517 -14.54065 -14.25364 -14.09044 -13.75787 -13.54095 -13.35246 -13.12607 -12.92554 -12.74654 -12.55642 -12.24470 -11.95581 -11.70771 -11.51101 -11.37486 -11.05962 -11.00935 -10.58751 -10.48578 -10.10701 -9.90879 -9.80672 -9.24043 -8.98528 -8.82151 -8.52840 -8.15109 -6.03772 -4.02372 1.19790 1.34059 2.33901 2.58706 3.33868 3.41572 3.48698 3.70868 4.46126 4.47777 4.56045 4.74370 4.77066 4.79525 4.87816 4.95874 5.04150 5.09287 5.19831 5.31042 5.40806 5.50302 5.52766 5.57137 5.75008 5.84418 5.94233 6.08015 6.19303 6.36123 6.41540 6.43482 6.44463 6.71090 6.89780 6.99585 7.32242 7.46407 7.62552 7.82204 7.91746 8.52504 8.99756 9.58514 11.09376 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.004582 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.009474 B = 6109.031999 C = 7118.635822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.469 3.531 5 O -0.484 6.484 6 C 0.139 3.861 7 H 0.122 0.878 8 N -0.669 5.669 9 C 0.076 3.924 10 C -0.009 4.009 11 C -0.521 4.521 12 H 0.072 0.928 13 C 0.068 3.932 14 N -0.903 5.903 15 Si 0.879 3.121 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.262 1.262 19 C -0.111 4.111 20 C -0.095 4.095 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.116 4.116 24 C -0.110 4.110 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.345 0.655 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.010 0.990 35 H 0.263 0.737 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.799 -8.136 -8.693 23.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.310 3.690 5 O -0.368 6.368 6 C 0.027 3.973 7 H 0.140 0.860 8 N -0.301 5.301 9 C -0.052 4.052 10 C -0.047 4.047 11 C -0.559 4.559 12 H 0.090 0.910 13 C -0.133 4.133 14 N -0.542 5.542 15 Si 0.707 3.293 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.187 1.187 19 C -0.113 4.113 20 C -0.113 4.113 21 C -0.138 4.138 22 C -0.136 4.136 23 C -0.134 4.134 24 C -0.129 4.129 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.166 0.834 31 H 0.048 0.952 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.028 0.972 35 H 0.073 0.927 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.361 -8.750 -8.037 23.574 hybrid contribution 0.624 -0.113 -1.007 1.190 sum -19.737 -8.863 -9.044 23.450 Atomic orbital electron populations 1.21789 0.92793 1.02748 1.03464 1.22968 0.95176 0.80637 1.02474 1.86507 1.24776 1.31949 1.84408 1.23599 0.80286 0.92414 0.72734 1.90657 1.60256 1.42362 1.43537 1.20000 0.91079 0.88553 0.97653 0.86035 1.60401 1.00467 1.40725 1.28520 1.22066 0.97366 0.87290 0.98429 1.19546 0.90143 0.98285 0.96746 1.21019 0.92191 1.02193 1.40504 0.91017 1.24985 0.98122 0.95542 0.94662 1.69913 1.11679 1.27164 1.45449 0.86775 0.80101 0.83575 0.78889 1.20370 1.21399 1.18656 1.20293 0.97516 0.98623 0.94898 1.21029 0.95715 0.95647 0.98949 1.21131 1.00117 0.99760 0.92759 1.21180 0.96336 0.98226 0.97818 1.21094 0.97183 0.96769 0.98332 1.21006 0.99686 0.99810 0.92359 0.91567 0.90432 0.91485 0.91490 0.91300 0.83374 0.95158 0.91274 0.95407 0.97168 0.92712 0.85633 0.85899 0.86079 0.85873 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 37.16 0.38 -0.71 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.36 -4.67 10.14 -39.27 -0.40 -5.06 16 4 C 0.47 7.15 7.31 36.01 0.26 7.42 16 5 O -0.48 -8.74 16.18 -18.74 -0.30 -9.05 16 6 C 0.14 2.06 2.74 -70.01 -0.19 1.87 16 7 H 0.12 1.65 7.66 -51.93 -0.40 1.25 16 8 N -0.67 -11.79 5.72 -109.19 -0.62 -12.42 16 9 C 0.08 1.52 5.42 -3.83 -0.02 1.50 16 10 C -0.01 -0.23 4.30 -27.88 -0.12 -0.35 16 11 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 12 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 15 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 16 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 18 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 19 C -0.11 -1.50 4.64 -104.62 -0.48 -1.98 16 20 C -0.09 -1.12 9.67 -39.59 -0.38 -1.50 16 21 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 22 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 23 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 24 C -0.11 -1.46 9.11 -39.58 -0.36 -1.82 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 29 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.35 5.89 6.35 -39.29 -0.25 5.64 16 31 H 0.03 0.60 8.00 -51.93 -0.42 0.19 16 32 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 33 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 34 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 35 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 36 H 0.13 1.26 8.04 -52.49 -0.42 0.84 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.12 1.61 6.51 -52.49 -0.34 1.27 16 LS Contribution 339.70 15.07 5.12 5.12 Total: -1.00 -33.25 339.70 -8.39 -41.64 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.98 Total: 2.67 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -2.31 Total: -13.09 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.15 Total: -39.67 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.70 Total: -14.11 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.25 -8.39 -41.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272991865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.113 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds