Wall clock time and date at job start Mon Mar 30 2020 01:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45192 * 109.47233 * 2 1 4 4 C 1.34233 * 116.99940 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99909 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99853 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47286 * 59.99591 * 6 4 3 8 8 N 1.46896 * 109.47169 * 179.97438 * 6 4 3 9 9 C 1.46897 * 111.00314 * 204.99914 * 8 6 4 10 10 C 1.52994 * 109.47430 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47045 * 180.02562 * 10 9 8 12 12 H 1.07993 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99701 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99711 * 180.02562 * 13 11 10 15 15 Si 1.86797 * 120.00302 * 359.97438 * 13 11 10 16 16 H 1.48497 * 109.47280 * 90.00223 * 15 13 11 17 17 H 1.48496 * 109.47524 * 210.00647 * 15 13 11 18 18 H 1.48507 * 109.47033 * 330.00451 * 15 13 11 19 19 C 1.50703 * 109.46901 * 300.00187 * 6 4 3 20 20 C 1.38235 * 120.00292 * 100.00039 * 19 6 4 21 21 C 1.38230 * 119.99899 * 179.97438 * 20 19 6 22 22 C 1.38235 * 120.00326 * 359.95697 * 21 20 19 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99503 * 279.97332 * 19 6 4 25 25 H 1.08991 * 109.47249 * 59.99856 * 1 2 3 26 26 H 1.09009 * 109.47343 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47009 * 299.99776 * 1 2 3 28 28 H 1.09006 * 109.46597 * 239.99918 * 2 1 3 29 29 H 1.09000 * 109.47430 * 120.00331 * 2 1 3 30 30 H 1.00904 * 110.99577 * 81.04420 * 8 6 4 31 31 H 1.09000 * 109.46944 * 300.00492 * 9 8 6 32 32 H 1.09000 * 109.46941 * 59.99682 * 9 8 6 33 33 H 1.09000 * 109.47550 * 300.00232 * 10 9 8 34 34 H 1.09001 * 109.46830 * 60.00323 * 10 9 8 35 35 H 0.97005 * 119.99742 * 179.97438 * 14 13 11 36 36 H 1.08001 * 119.99730 * 359.97438 * 20 19 6 37 37 H 1.08000 * 120.00376 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.00616 * 179.72578 * 22 21 20 39 39 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.00455 * 0.02562 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.5852 3.4690 0.8904 8 7 5.3877 2.8605 -0.0001 9 6 5.9786 4.0739 0.5799 10 6 7.5039 3.9566 0.5631 11 6 8.1100 5.2012 1.1587 12 1 7.4712 5.9961 1.5141 13 6 9.4802 5.3250 1.2499 14 7 10.0091 6.4109 1.7702 15 14 10.5852 3.9499 0.6359 16 1 10.9091 4.1768 -0.7955 17 1 11.8397 3.9307 1.4302 18 1 9.8853 2.6486 0.7846 19 6 3.4556 3.6738 -1.2298 20 6 2.4061 4.5693 -1.1437 21 6 1.9799 5.2451 -2.2716 22 6 2.6037 5.0262 -3.4856 23 6 3.6542 4.1317 -3.5715 24 6 4.0790 3.4541 -2.4439 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 5.7410 2.6955 -0.9308 31 1 5.6740 4.9417 -0.0051 32 1 5.6347 4.1898 1.6077 33 1 7.8082 3.0889 1.1484 34 1 7.8481 3.8405 -0.4646 35 1 10.9731 6.4979 1.8347 36 1 1.9192 4.7408 -0.1950 37 1 1.1596 5.9445 -2.2045 38 1 2.2679 5.5509 -4.3678 39 1 4.1414 3.9603 -4.5200 40 1 4.8990 2.7545 -2.5113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272991865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:27 Heat of formation + Delta-G solvation = -82.996267 kcal Electronic energy + Delta-G solvation = -21227.476955 eV Core-core repulsion = 18006.259625 eV Total energy + Delta-G solvation = -3221.217330 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.78160 -40.19903 -38.03401 -37.18293 -35.18269 -33.37435 -32.46371 -31.88229 -30.85545 -28.19202 -25.66334 -24.20038 -23.53845 -23.00279 -22.26183 -21.49559 -18.99587 -18.78927 -18.29373 -17.59108 -17.41928 -16.49594 -16.41251 -15.98417 -15.70783 -15.13475 -15.02816 -14.92261 -14.58400 -14.36340 -14.23772 -13.67424 -13.59711 -13.55421 -13.19676 -12.97805 -12.85859 -12.50789 -12.32337 -12.11144 -11.94931 -11.82878 -11.77658 -11.53263 -11.50670 -11.43435 -10.77448 -9.87453 -9.78001 -9.53120 -8.30400 -6.34444 0.28643 0.46258 1.15865 1.35290 1.38255 1.51224 1.52824 2.36018 2.80551 3.05275 3.21545 3.51623 3.79542 3.81423 4.00079 4.07400 4.09476 4.18797 4.26784 4.34085 4.40397 4.50036 4.58749 4.65312 4.81963 4.90968 4.92529 4.97382 5.09637 5.13136 5.19351 5.41832 5.42894 5.50028 5.51945 5.57983 5.61191 5.89715 6.05288 6.16877 6.30157 6.72360 6.76208 7.30325 8.85953 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016633 B = 0.004582 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.009474 B = 6109.031999 C = 7118.635822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.052 3.948 3 O -0.355 6.355 4 C 0.475 3.525 5 O -0.519 6.519 6 C 0.141 3.859 7 H 0.132 0.868 8 N -0.676 5.676 9 C 0.093 3.907 10 C -0.005 4.005 11 C -0.530 4.530 12 H 0.038 0.962 13 C 0.009 3.991 14 N -0.948 5.948 15 Si 0.948 3.052 16 H -0.265 1.265 17 H -0.283 1.283 18 H -0.253 1.253 19 C -0.127 4.127 20 C -0.104 4.104 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.131 4.131 25 H 0.068 0.932 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.348 0.652 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.021 0.979 34 H 0.017 0.983 35 H 0.267 0.733 36 H 0.140 0.860 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.390 -8.882 -10.067 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 O -0.272 6.272 4 C 0.317 3.683 5 O -0.406 6.406 6 C 0.029 3.971 7 H 0.149 0.851 8 N -0.309 5.309 9 C -0.035 4.035 10 C -0.043 4.043 11 C -0.568 4.568 12 H 0.056 0.944 13 C -0.188 4.188 14 N -0.588 5.588 15 Si 0.772 3.228 16 H -0.190 1.190 17 H -0.208 1.208 18 H -0.177 1.177 19 C -0.129 4.129 20 C -0.122 4.122 21 C -0.138 4.138 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.150 4.150 25 H 0.087 0.913 26 H 0.119 0.881 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.169 0.831 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.158 0.842 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.995 -9.498 -9.420 25.744 hybrid contribution 0.984 0.167 -0.587 1.158 sum -21.011 -9.332 -10.007 25.074 Atomic orbital electron populations 1.21804 0.90037 1.04378 1.03758 1.23298 0.97287 0.79260 1.02318 1.86501 1.23313 1.33647 1.83731 1.23630 0.80830 0.92076 0.71728 1.90639 1.61158 1.43388 1.45439 1.19982 0.89186 0.88864 0.99067 0.85080 1.60247 1.02598 1.39217 1.28813 1.21682 0.94830 0.88368 0.98575 1.19427 0.92856 0.95646 0.96330 1.21329 0.92258 1.02953 1.40285 0.94397 1.25911 0.99858 0.98126 0.94896 1.70050 1.12306 1.29422 1.47063 0.85689 0.77940 0.80395 0.78823 1.19019 1.20840 1.17650 1.20194 0.98827 0.99668 0.94206 1.21282 0.95338 0.95284 1.00298 1.21508 1.00510 0.99558 0.92248 1.21575 0.95492 0.97516 0.98928 1.21375 0.97630 0.96690 0.98490 1.21109 1.00106 1.00622 0.93151 0.91303 0.88122 0.91100 0.91710 0.91526 0.83124 0.95330 0.91522 0.96103 0.96470 0.92407 0.84192 0.83139 0.83300 0.84179 0.86672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 10.29 71.98 0.74 -1.03 16 2 C 0.05 1.03 6.19 71.98 0.45 1.47 16 3 O -0.36 -8.93 10.14 -51.45 -0.52 -9.45 16 4 C 0.48 14.38 7.31 71.24 0.52 14.90 16 5 O -0.52 -18.87 16.18 21.98 0.36 -18.52 16 6 C 0.14 4.10 2.74 43.43 0.12 4.22 16 7 H 0.13 3.49 7.66 -2.39 -0.02 3.48 16 8 N -0.68 -23.80 5.72 -499.37 -2.86 -26.65 16 9 C 0.09 3.76 5.42 86.30 0.47 4.23 16 10 C 0.00 -0.23 4.30 29.85 0.13 -0.10 16 11 C -0.53 -30.93 9.66 25.60 0.25 -30.69 16 12 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 13 C 0.01 0.55 5.47 84.66 0.46 1.02 16 14 N -0.95 -59.88 13.96 21.45 0.30 -59.58 16 15 Si 0.95 45.55 27.47 68.60 1.88 47.43 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 18 H -0.25 -11.67 6.54 99.48 0.65 -11.02 16 19 C -0.13 -3.32 4.64 -19.87 -0.09 -3.41 16 20 C -0.10 -2.27 9.67 22.27 0.22 -2.05 16 21 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 22 C -0.12 -2.15 10.05 22.27 0.22 -1.92 16 23 C -0.12 -2.65 10.05 22.27 0.22 -2.43 16 24 C -0.13 -3.40 9.11 22.27 0.20 -3.20 16 25 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 26 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 1.31 8.13 -2.38 -0.02 1.29 16 29 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 30 H 0.35 11.89 6.35 -89.69 -0.57 11.32 16 31 H 0.03 1.15 8.00 -2.39 -0.02 1.13 16 32 H 0.07 2.69 8.05 -2.39 -0.02 2.67 16 33 H 0.02 1.03 7.20 -2.39 -0.02 1.02 16 34 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 35 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 36 H 0.14 2.54 8.04 -2.91 -0.02 2.51 16 37 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 38 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 40 H 0.12 3.05 6.51 -2.91 -0.02 3.03 16 Total: -1.00 -72.10 339.70 3.69 -68.41 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.40 Total: 19.35 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 4.13 Total: -20.99 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.56 Total: -86.23 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.17 Total: -27.97 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.43 kcal Total: -72.10 3.69 -68.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272991865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.590 kcal (2) G-P(sol) polarization free energy of solvation -72.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds