Wall clock time and date at job start Mon Mar 30 2020 01:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.38749 * 120.05764 * 0.24762 * 3 2 1 5 5 C 1.38124 * 119.94616 * 180.32030 * 4 3 2 6 6 C 1.38294 * 120.04986 * 359.68533 * 5 4 3 7 7 C 1.38236 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05848 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03133 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 265.00010 * 9 8 7 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00011 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00115 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46784 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.46609 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99745 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99517 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00491 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99744 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47191 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47152 * 119.99688 * 20 18 16 23 23 H 1.48494 * 109.47204 * 239.99635 * 20 18 16 24 24 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47142 * 300.00353 * 1 2 3 26 26 H 1.09006 * 109.47170 * 60.00300 * 1 2 3 27 27 H 1.08002 * 120.03011 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.97736 * 179.70050 * 5 4 3 29 29 H 1.08004 * 119.94098 * 180.02562 * 6 5 4 30 30 H 1.08003 * 119.97210 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47060 * 25.00065 * 9 8 7 32 32 H 1.09001 * 109.47380 * 145.00153 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 35 35 H 0.97003 * 119.99640 * 0.02562 * 13 11 10 36 36 H 1.09002 * 109.46801 * 299.99526 * 14 13 11 37 37 H 1.08992 * 109.46823 * 59.99976 * 14 13 11 38 38 H 1.08992 * 109.47457 * 299.99933 * 15 14 13 39 39 H 1.09001 * 109.46962 * 59.99999 * 15 14 13 40 40 H 0.97000 * 119.99871 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6757 -0.0068 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0222 0.0000 10 6 4.4215 -0.4776 -1.4362 11 6 5.2446 -1.7399 -1.4360 12 8 5.6562 -2.1953 -0.3900 13 7 5.5234 -2.3629 -2.5982 14 6 6.3232 -3.5904 -2.5979 15 6 6.4910 -4.0901 -4.0342 16 6 7.3142 -5.3524 -4.0339 17 1 7.6806 -5.7579 -3.1024 18 6 7.5995 -5.9896 -5.2228 19 7 7.1529 -5.4961 -6.3571 20 14 8.6193 -7.5547 -5.2224 21 1 8.9967 -7.8992 -3.8282 22 1 7.8244 -8.6636 -5.8089 23 1 9.8477 -7.3453 -6.0299 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 0.2128 2.3203 0.0097 28 1 1.3339 4.5113 -0.0024 29 1 3.7922 4.6381 -0.0116 30 1 5.1344 2.5752 -0.0097 31 1 5.2341 0.2273 0.4302 32 1 3.7489 -0.7402 0.5934 33 1 3.4412 -0.6828 -1.8664 34 1 4.9262 0.2847 -2.0297 35 1 5.1946 -1.9985 -3.4349 36 1 7.3033 -3.3853 -2.1673 37 1 5.8181 -4.3528 -2.0050 38 1 5.5108 -4.2952 -4.4644 39 1 6.9958 -3.3276 -4.6275 40 1 7.3539 -5.9442 -7.1936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273000880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:44 Heat of formation + Delta-G solvation = -73.521194 kcal Electronic energy + Delta-G solvation = -20346.115287 eV Core-core repulsion = 17125.308827 eV Total energy + Delta-G solvation = -3220.806460 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.49372 -39.11619 -37.61154 -34.91184 -33.98526 -32.80048 -30.52145 -30.19932 -29.14344 -27.50585 -25.37468 -23.90872 -22.33145 -21.41431 -20.82624 -19.81368 -18.19148 -16.84898 -16.52151 -16.28916 -15.92332 -15.62631 -15.25162 -14.99358 -14.64984 -14.43511 -14.07389 -13.56069 -13.47812 -13.15507 -12.71299 -12.48432 -12.31020 -12.14814 -11.90646 -11.73476 -11.35552 -11.16857 -11.03523 -10.93312 -10.84710 -10.60611 -10.29821 -9.75188 -9.42742 -9.18632 -8.99633 -8.50278 -8.32651 -8.30272 -6.07866 -4.10460 1.09720 1.23076 3.07247 3.12751 3.29420 3.36832 3.42023 3.50941 3.83528 4.43232 4.53927 4.59543 4.81887 4.84898 4.89289 5.06045 5.11035 5.17355 5.24968 5.29203 5.29713 5.42808 5.46020 5.72310 5.78366 5.87312 6.12839 6.24609 6.28284 6.38845 6.40046 6.41973 6.59239 6.78485 7.00389 7.18864 7.54951 7.64785 7.90954 8.10108 8.30658 8.75211 8.96112 9.54357 11.03816 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032937 B = 0.002682 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.896488 B =10436.123020 C =10677.992697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.130 3.870 4 C -0.209 4.209 5 C -0.088 4.088 6 C -0.157 4.157 7 C -0.079 4.079 8 C -0.110 4.110 9 C -0.055 4.055 10 C -0.133 4.133 11 C 0.505 3.495 12 O -0.553 6.553 13 N -0.725 5.725 14 C 0.121 3.879 15 C 0.012 3.988 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.100 0.900 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.397 0.603 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.656 18.899 10.988 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.084 3.916 4 C -0.228 4.228 5 C -0.106 4.106 6 C -0.175 4.175 7 C -0.097 4.097 8 C -0.111 4.111 9 C -0.093 4.093 10 C -0.173 4.173 11 C 0.291 3.709 12 O -0.432 6.432 13 N -0.375 5.375 14 C -0.001 4.001 15 C -0.026 4.026 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.119 0.881 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.148 0.852 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.231 0.769 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.270 18.309 11.544 25.388 hybrid contribution 0.019 -0.461 -0.661 0.806 sum -13.251 17.848 10.883 24.750 Atomic orbital electron populations 1.23068 0.78536 1.04110 1.01114 1.86142 1.21146 1.26603 1.88385 1.18908 0.91862 0.84302 0.96483 1.21219 0.99930 0.92424 1.09194 1.20908 0.94726 0.96852 0.98093 1.21050 0.93907 0.98396 1.04142 1.20972 1.00110 0.90984 0.97617 1.19369 0.90552 0.96124 1.05025 1.20141 0.99520 0.93626 0.95983 1.21615 1.01026 0.95854 0.98808 1.20610 0.80646 0.85594 0.84045 1.90661 1.53758 1.67210 1.31576 1.46357 1.54484 1.28098 1.08513 1.21696 0.93532 0.83569 1.01307 1.19329 0.97686 0.96532 0.89004 1.21106 1.32897 1.08692 0.93189 0.92205 1.25003 0.96025 0.97815 0.95513 1.69968 1.45682 1.39979 0.97740 0.86460 0.79914 0.82994 0.78228 1.19580 1.20940 1.20942 0.88116 0.92816 0.92683 0.85614 0.86031 0.85960 0.85209 0.90340 0.89858 0.89030 0.89282 0.76948 0.92669 0.92683 0.95967 0.95965 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.48 9.64 -19.42 -0.19 -3.67 16 3 C 0.13 1.44 6.66 -39.22 -0.26 1.18 16 4 C -0.21 -1.92 9.04 -39.43 -0.36 -2.27 16 5 C -0.09 -0.73 10.04 -39.60 -0.40 -1.13 16 6 C -0.16 -1.35 10.04 -39.56 -0.40 -1.75 16 7 C -0.08 -0.77 9.68 -39.61 -0.38 -1.16 16 8 C -0.11 -1.25 5.15 -104.47 -0.54 -1.79 16 9 C -0.05 -0.71 4.35 -27.88 -0.12 -0.83 16 10 C -0.13 -1.72 5.68 -27.89 -0.16 -1.88 16 11 C 0.51 8.81 7.83 -10.99 -0.09 8.72 16 12 O -0.55 -11.70 15.98 5.56 0.09 -11.61 16 13 N -0.72 -13.05 5.56 -60.29 -0.33 -13.39 16 14 C 0.12 2.66 5.61 -4.04 -0.02 2.63 16 15 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 16 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 17 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 20 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.32 7.65 -51.93 -0.40 -0.08 16 26 H 0.05 0.33 7.67 -51.93 -0.40 -0.07 16 27 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 28 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 30 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.08 1.01 8.01 -51.93 -0.42 0.60 16 32 H 0.08 1.21 7.66 -51.93 -0.40 0.81 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 6.19 8.47 -40.82 -0.35 5.84 16 36 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -33.17 341.85 -7.90 -41.08 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.06 Total: 1.86 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.28 Total: -10.33 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.40 Total: -39.03 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.10 Total: -15.28 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.17 -7.90 -41.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273000880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.445 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds