Wall clock time and date at job start Mon Mar 30 2020 01:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.38749 * 120.05764 * 0.24762 * 3 2 1 5 5 C 1.38124 * 119.94616 * 180.32030 * 4 3 2 6 6 C 1.38294 * 120.04986 * 359.68533 * 5 4 3 7 7 C 1.38236 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05848 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03133 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 265.00010 * 9 8 7 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 8 12 12 O 1.21282 * 120.00011 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00115 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46784 * 179.97438 * 14 13 11 16 16 C 1.50705 * 109.46609 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99745 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99517 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00491 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99744 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47191 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47152 * 119.99688 * 20 18 16 23 23 H 1.48494 * 109.47204 * 239.99635 * 20 18 16 24 24 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47142 * 300.00353 * 1 2 3 26 26 H 1.09006 * 109.47170 * 60.00300 * 1 2 3 27 27 H 1.08002 * 120.03011 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.97736 * 179.70050 * 5 4 3 29 29 H 1.08004 * 119.94098 * 180.02562 * 6 5 4 30 30 H 1.08003 * 119.97210 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47060 * 25.00065 * 9 8 7 32 32 H 1.09001 * 109.47380 * 145.00153 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 35 35 H 0.97003 * 119.99640 * 0.02562 * 13 11 10 36 36 H 1.09002 * 109.46801 * 299.99526 * 14 13 11 37 37 H 1.08992 * 109.46823 * 59.99976 * 14 13 11 38 38 H 1.08992 * 109.47457 * 299.99933 * 15 14 13 39 39 H 1.09001 * 109.46962 * 59.99999 * 15 14 13 40 40 H 0.97000 * 119.99871 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6757 -0.0068 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0222 0.0000 10 6 4.4215 -0.4776 -1.4362 11 6 5.2446 -1.7399 -1.4360 12 8 5.6562 -2.1953 -0.3900 13 7 5.5234 -2.3629 -2.5982 14 6 6.3232 -3.5904 -2.5979 15 6 6.4910 -4.0901 -4.0342 16 6 7.3142 -5.3524 -4.0339 17 1 7.6806 -5.7579 -3.1024 18 6 7.5995 -5.9896 -5.2228 19 7 7.1529 -5.4961 -6.3571 20 14 8.6193 -7.5547 -5.2224 21 1 8.9967 -7.8992 -3.8282 22 1 7.8244 -8.6636 -5.8089 23 1 9.8477 -7.3453 -6.0299 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 0.2128 2.3203 0.0097 28 1 1.3339 4.5113 -0.0024 29 1 3.7922 4.6381 -0.0116 30 1 5.1344 2.5752 -0.0097 31 1 5.2341 0.2273 0.4302 32 1 3.7489 -0.7402 0.5934 33 1 3.4412 -0.6828 -1.8664 34 1 4.9262 0.2847 -2.0297 35 1 5.1946 -1.9985 -3.4349 36 1 7.3033 -3.3853 -2.1673 37 1 5.8181 -4.3528 -2.0050 38 1 5.5108 -4.2952 -4.4644 39 1 6.9958 -3.3276 -4.6275 40 1 7.3539 -5.9442 -7.1936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273000880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:44 Heat of formation + Delta-G solvation = -94.409959 kcal Electronic energy + Delta-G solvation = -20347.021092 eV Core-core repulsion = 17125.308827 eV Total energy + Delta-G solvation = -3221.712265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.26773 -40.54161 -38.32107 -36.64550 -34.99492 -34.80817 -31.89023 -31.05653 -30.42859 -28.12953 -27.02267 -25.29139 -23.00838 -22.91179 -22.11436 -21.21335 -18.90427 -18.59020 -17.96213 -17.32385 -16.75698 -16.64205 -16.55076 -16.40554 -16.29482 -15.35881 -15.29492 -14.76964 -14.61190 -14.34535 -13.93087 -13.83764 -13.62843 -13.21467 -12.95050 -12.85862 -12.78275 -12.51664 -12.47527 -12.23996 -11.99622 -11.83854 -11.67662 -11.64290 -11.44869 -10.81865 -10.61667 -9.99689 -9.76531 -9.05637 -8.24956 -6.35539 0.39163 0.53204 1.40510 1.41319 1.54727 1.69309 2.28842 2.44240 2.47065 2.85815 3.09616 3.70472 3.89648 3.98136 4.12059 4.22618 4.32782 4.33219 4.40728 4.48166 4.49281 4.54590 4.58033 4.68393 4.74953 4.78245 4.85090 4.93781 5.08311 5.24748 5.32361 5.44976 5.50650 5.56924 5.57637 5.65578 5.78457 5.92693 6.15820 6.50999 6.65652 6.77914 7.31568 7.33907 8.87146 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032937 B = 0.002682 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.896488 B =10436.123020 C =10677.992697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.113 3.887 4 C -0.213 4.213 5 C -0.087 4.087 6 C -0.159 4.159 7 C -0.085 4.085 8 C -0.132 4.132 9 C -0.047 4.047 10 C -0.118 4.118 11 C 0.505 3.495 12 O -0.592 6.592 13 N -0.720 5.720 14 C 0.140 3.860 15 C 0.023 3.977 16 C -0.547 4.547 17 H 0.058 0.942 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.966 3.034 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 H 0.108 0.892 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.145 0.855 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.140 0.860 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.411 0.589 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.291 20.256 10.963 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.068 3.932 4 C -0.231 4.231 5 C -0.105 4.105 6 C -0.177 4.177 7 C -0.103 4.103 8 C -0.132 4.132 9 C -0.085 4.085 10 C -0.158 4.158 11 C 0.293 3.707 12 O -0.473 6.473 13 N -0.371 5.371 14 C 0.016 3.984 15 C -0.015 4.015 16 C -0.585 4.585 17 H 0.076 0.924 18 C -0.192 4.192 19 N -0.566 5.566 20 Si 0.790 3.210 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.201 1.201 24 H 0.127 0.873 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.163 0.837 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.246 0.754 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.026 0.974 39 H 0.028 0.972 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.927 19.692 11.510 26.725 hybrid contribution 0.152 -0.818 -0.635 1.047 sum -13.775 18.873 10.875 25.772 Atomic orbital electron populations 1.23296 0.76818 1.05121 1.02285 1.86100 1.23120 1.27214 1.88598 1.19120 0.92013 0.84940 0.97158 1.21493 1.00969 0.92073 1.08607 1.21306 0.94989 0.97582 0.96582 1.21372 0.94238 0.98917 1.03215 1.21169 1.00890 0.90864 0.97406 1.19320 0.90836 0.95814 1.07255 1.19980 0.99228 0.94028 0.95256 1.21584 1.00741 0.93758 0.99676 1.21390 0.80047 0.86358 0.82880 1.90644 1.55325 1.68464 1.32909 1.46203 1.54136 1.27024 1.09721 1.21206 0.93566 0.84894 0.98753 1.19136 0.96259 0.95500 0.90569 1.21503 1.33640 1.09982 0.93417 0.92416 1.25882 0.97089 1.01193 0.95051 1.70065 1.46662 1.41505 0.98390 0.85384 0.78350 0.78769 0.78466 1.19044 1.20139 1.20104 0.87328 0.91590 0.91473 0.83691 0.83316 0.83663 0.84210 0.90979 0.92293 0.87849 0.86678 0.75356 0.93644 0.93869 0.97357 0.97236 0.92502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.34 -7.45 9.64 -92.42 -0.89 -8.34 16 3 C 0.11 2.40 6.66 22.51 0.15 2.55 16 4 C -0.21 -3.45 9.04 22.36 0.20 -3.25 16 5 C -0.09 -1.20 10.04 22.26 0.22 -0.98 16 6 C -0.16 -2.33 10.04 22.28 0.22 -2.11 16 7 C -0.09 -1.54 9.68 22.25 0.22 -1.33 16 8 C -0.13 -2.91 5.15 -19.77 -0.10 -3.01 16 9 C -0.05 -1.22 4.35 29.85 0.13 -1.09 16 10 C -0.12 -2.97 5.68 29.85 0.17 -2.80 16 11 C 0.50 17.64 7.83 87.66 0.69 18.32 16 12 O -0.59 -25.57 15.98 -3.04 -0.05 -25.62 16 13 N -0.72 -25.96 5.56 -463.05 -2.57 -28.54 16 14 C 0.14 6.24 5.61 86.38 0.48 6.72 16 15 C 0.02 1.17 5.09 29.85 0.15 1.33 16 16 C -0.55 -31.14 9.11 25.60 0.23 -30.90 16 17 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 18 C 0.01 0.37 5.46 84.65 0.46 0.83 16 19 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 20 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 0.68 7.65 -2.39 -0.02 0.67 16 26 H 0.07 0.70 7.67 -2.38 -0.02 0.68 16 27 H 0.15 1.67 6.30 -2.91 -0.02 1.65 16 28 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 29 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 30 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.07 1.90 8.01 -2.39 -0.02 1.88 16 32 H 0.06 1.78 7.66 -2.39 -0.02 1.77 16 33 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.41 12.61 8.47 -92.71 -0.79 11.82 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -71.58 341.85 3.39 -68.19 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.24 Total: 17.03 kcal Atomic # 6 Polarization: -18.69 SS G_CDS: 4.34 Total: -14.35 kcal Atomic # 7 Polarization: -80.77 SS G_CDS: -2.29 Total: -83.06 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -0.94 Total: -33.95 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -71.58 3.39 -68.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273000880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.217 kcal (2) G-P(sol) polarization free energy of solvation -71.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds