Wall clock time and date at job start Mon Mar 30 2020 01:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.21281 * 120.00335 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99612 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99957 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47405 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.47505 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99499 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00136 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00209 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99748 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46677 * 90.00728 * 18 16 14 20 20 H 1.48504 * 109.46916 * 209.99885 * 18 16 14 21 21 H 1.48494 * 109.47570 * 330.00197 * 18 16 14 22 22 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 23 23 C 1.38145 * 120.05942 * 359.97438 * 22 7 6 24 24 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 30 30 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 31 31 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 32 32 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 33 33 H 0.97001 * 120.00252 * 0.02562 * 11 9 8 34 34 H 1.09004 * 109.47098 * 300.00436 * 12 11 9 35 35 H 1.09002 * 109.47139 * 60.00127 * 12 11 9 36 36 H 1.09004 * 109.47040 * 300.00094 * 13 12 11 37 37 H 1.09002 * 109.47177 * 59.99772 * 13 12 11 38 38 H 0.96995 * 120.00297 * 179.97438 * 17 16 14 39 39 H 1.08008 * 119.97547 * 179.97438 * 22 7 6 40 40 H 1.08000 * 120.03441 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3059 2.0481 2.3447 11 7 9.4011 2.3250 1.6699 12 6 9.8847 2.3887 3.0513 13 6 11.4015 2.5894 3.0520 14 6 11.8991 2.6543 4.4729 15 1 11.2030 2.5621 5.2935 16 6 13.2429 2.8314 4.7254 17 7 14.0904 2.9442 3.7261 18 14 13.8596 2.9126 6.4868 19 1 14.2061 1.5460 6.9534 20 1 15.0650 3.7775 6.5499 21 1 12.7981 3.4786 7.3574 22 6 5.2549 2.9853 0.0010 23 6 3.8850 2.8070 0.0003 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7884 -0.5724 0.0117 30 1 6.2281 -0.2456 0.0032 31 1 8.0671 1.2509 -0.5113 32 1 7.8338 3.0155 -0.5117 33 1 10.0263 2.4075 0.9329 34 1 9.4079 3.2235 3.5651 35 1 9.6407 1.4588 3.5650 36 1 11.8786 1.7548 2.5381 37 1 11.6452 3.5194 2.5384 38 1 15.0358 3.0692 3.9037 39 1 5.6690 3.9828 0.0011 40 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273033959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:19 Heat of formation + Delta-G solvation = -71.863825 kcal Electronic energy + Delta-G solvation = -20069.318239 eV Core-core repulsion = 16848.583648 eV Total energy + Delta-G solvation = -3220.734591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.34839 -39.23701 -37.58730 -34.81516 -32.90148 -32.69596 -31.47556 -30.95905 -29.62905 -26.99391 -24.60066 -24.18903 -22.30943 -21.55141 -20.86498 -19.92483 -18.41766 -16.77875 -16.34184 -16.27268 -16.18237 -15.75704 -15.01267 -14.73230 -14.47402 -14.31380 -13.71803 -13.61302 -13.57008 -13.13810 -13.12031 -12.86886 -12.31598 -12.03137 -12.00537 -11.74464 -11.58179 -11.20048 -11.02880 -10.92103 -10.84363 -10.63942 -10.31801 -9.78467 -9.46073 -9.18960 -9.02785 -8.52928 -8.33832 -8.13279 -6.09634 -4.12362 1.31408 1.35910 3.00322 3.05516 3.29291 3.35336 3.39483 3.55314 3.97097 4.42389 4.58422 4.59580 4.72024 4.78279 4.80414 4.92222 5.13198 5.21995 5.27379 5.28161 5.32637 5.44040 5.47753 5.55738 5.65734 5.70601 5.97599 6.18771 6.27971 6.36047 6.36859 6.58417 6.70073 6.75094 6.95097 7.29360 7.52007 7.61851 7.88792 8.05036 8.28277 8.70435 8.93757 9.52458 11.01926 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042409 B = 0.002455 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.085622 B =11403.953360 C =11685.988928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.124 3.876 5 C -0.207 4.207 6 C -0.065 4.065 7 C -0.095 4.095 8 C -0.101 4.101 9 C 0.504 3.496 10 O -0.543 6.543 11 N -0.725 5.725 12 C 0.122 3.878 13 C 0.012 3.988 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.066 4.066 23 C -0.151 4.151 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.397 0.603 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.128 0.872 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.274 -4.716 -12.965 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.079 3.921 5 C -0.226 4.226 6 C -0.084 4.084 7 C -0.096 4.096 8 C -0.141 4.141 9 C 0.289 3.711 10 O -0.421 6.421 11 N -0.375 5.375 12 C 0.000 4.000 13 C -0.025 4.025 14 C -0.560 4.560 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.084 4.084 23 C -0.169 4.169 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.231 0.769 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.146 0.854 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.799 -4.624 -12.310 25.458 hybrid contribution 0.944 -0.192 0.636 1.154 sum -20.855 -4.816 -11.674 24.381 Atomic orbital electron populations 1.21773 0.92836 1.02788 1.03488 1.22761 0.95764 0.82176 1.01421 1.86047 1.19287 1.29127 1.88863 1.18959 0.82014 0.94236 0.96910 1.21142 0.94236 0.97850 1.09348 1.20771 0.94270 0.96670 0.96641 1.19226 0.94054 0.93323 1.02986 1.20655 0.93026 1.04829 0.95596 1.20497 0.82679 0.77044 0.90857 1.90696 1.55270 1.49765 1.46322 1.46348 1.07479 1.72975 1.10711 1.21700 0.97947 1.00642 0.79756 1.19324 0.87407 0.97639 0.98133 1.21059 0.92785 1.50263 0.91901 0.92278 1.24999 0.96892 0.95041 0.97405 1.69949 1.02971 1.49598 1.30791 0.86511 0.78366 0.78034 0.84638 1.20564 1.21162 1.19735 1.20805 0.92100 0.98648 0.96810 1.20346 0.95082 0.94715 1.06804 0.91503 0.91582 0.90432 0.92119 0.92009 0.85709 0.85909 0.88245 0.88164 0.76921 0.92665 0.92695 0.95963 0.95931 0.92853 0.85431 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.53 16 2 C 0.05 0.43 5.46 37.16 0.20 0.64 16 3 O -0.32 -3.66 10.14 -19.41 -0.20 -3.85 16 4 C 0.12 1.54 6.69 -39.21 -0.26 1.27 16 5 C -0.21 -2.42 9.04 -39.43 -0.36 -2.78 16 6 C -0.07 -0.80 9.69 -39.61 -0.38 -1.19 16 7 C -0.10 -1.22 4.37 -104.60 -0.46 -1.68 16 8 C -0.10 -1.19 5.83 -29.03 -0.17 -1.36 16 9 C 0.50 8.41 7.82 -10.98 -0.09 8.32 16 10 O -0.54 -11.37 16.03 5.56 0.09 -11.28 16 11 N -0.72 -12.45 5.56 -60.29 -0.33 -12.78 16 12 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 13 C 0.01 0.31 5.09 -27.88 -0.14 0.16 16 14 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 18 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.07 -0.81 9.69 -39.61 -0.38 -1.20 16 23 C -0.15 -1.85 9.99 -39.43 -0.39 -2.25 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.42 7.68 -51.93 -0.40 0.02 16 28 H 0.06 0.47 7.65 -51.93 -0.40 0.08 16 29 H 0.13 1.17 6.30 -52.49 -0.33 0.84 16 30 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 31 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 33 H 0.40 5.76 8.47 -40.82 -0.35 5.42 16 34 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -33.39 343.49 -8.12 -41.51 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.08 Total: 1.47 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.48 Total: -11.29 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.40 Total: -38.16 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.11 Total: -15.14 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.39 -8.12 -41.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273033959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.355 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds