Wall clock time and date at job start Mon Mar 30 2020 01:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.21281 * 120.00335 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99612 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99957 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47405 * 180.02562 * 12 11 9 14 14 C 1.50699 * 109.47505 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99499 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00136 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00209 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99748 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46677 * 90.00728 * 18 16 14 20 20 H 1.48504 * 109.46916 * 209.99885 * 18 16 14 21 21 H 1.48494 * 109.47570 * 330.00197 * 18 16 14 22 22 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 23 23 C 1.38145 * 120.05942 * 359.97438 * 22 7 6 24 24 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 25 25 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 28 28 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 29 29 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 30 30 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 31 31 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 32 32 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 33 33 H 0.97001 * 120.00252 * 0.02562 * 11 9 8 34 34 H 1.09004 * 109.47098 * 300.00436 * 12 11 9 35 35 H 1.09002 * 109.47139 * 60.00127 * 12 11 9 36 36 H 1.09004 * 109.47040 * 300.00094 * 13 12 11 37 37 H 1.09002 * 109.47177 * 59.99772 * 13 12 11 38 38 H 0.96995 * 120.00297 * 179.97438 * 17 16 14 39 39 H 1.08008 * 119.97547 * 179.97438 * 22 7 6 40 40 H 1.08000 * 120.03441 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3059 2.0481 2.3447 11 7 9.4011 2.3250 1.6699 12 6 9.8847 2.3887 3.0513 13 6 11.4015 2.5894 3.0520 14 6 11.8991 2.6543 4.4729 15 1 11.2030 2.5621 5.2935 16 6 13.2429 2.8314 4.7254 17 7 14.0904 2.9442 3.7261 18 14 13.8596 2.9126 6.4868 19 1 14.2061 1.5460 6.9534 20 1 15.0650 3.7775 6.5499 21 1 12.7981 3.4786 7.3574 22 6 5.2549 2.9853 0.0010 23 6 3.8850 2.8070 0.0003 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.7884 -0.5724 0.0117 30 1 6.2281 -0.2456 0.0032 31 1 8.0671 1.2509 -0.5113 32 1 7.8338 3.0155 -0.5117 33 1 10.0263 2.4075 0.9329 34 1 9.4079 3.2235 3.5651 35 1 9.6407 1.4588 3.5650 36 1 11.8786 1.7548 2.5381 37 1 11.6452 3.5194 2.5384 38 1 15.0358 3.0692 3.9037 39 1 5.6690 3.9828 0.0011 40 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273033959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:19 Heat of formation + Delta-G solvation = -92.884286 kcal Electronic energy + Delta-G solvation = -20070.229755 eV Core-core repulsion = 16848.583648 eV Total energy + Delta-G solvation = -3221.646107 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27421 -40.48710 -38.52249 -36.53071 -34.79404 -33.61722 -32.36229 -31.82259 -31.32337 -28.16480 -26.37518 -24.94330 -23.33031 -22.85652 -22.24092 -21.20790 -19.23864 -18.59026 -17.86750 -17.12323 -17.02894 -16.99035 -16.45102 -16.35415 -15.88072 -15.34361 -14.94710 -14.69000 -14.44308 -14.34355 -14.26805 -14.17055 -13.39625 -13.21543 -13.01727 -12.82574 -12.80599 -12.57643 -12.52114 -12.43306 -12.20518 -11.66310 -11.65327 -11.62650 -11.45464 -10.80108 -10.60341 -9.97034 -9.92555 -9.04574 -8.24253 -6.34516 0.41006 0.43155 1.41444 1.41750 1.53306 1.74245 2.26144 2.30927 2.46597 2.89647 3.10259 3.76505 3.82914 3.95553 4.04631 4.12421 4.14047 4.34030 4.36095 4.43747 4.49546 4.53186 4.57006 4.69758 4.75408 4.86884 4.91434 4.93354 5.10124 5.19554 5.30467 5.33753 5.39589 5.52130 5.59508 5.66707 5.79806 5.84110 6.17080 6.46967 6.71079 6.78782 7.34660 7.37412 8.87349 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042409 B = 0.002455 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.085622 B =11403.953360 C =11685.988928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.334 6.334 4 C 0.113 3.887 5 C -0.213 4.213 6 C -0.077 4.077 7 C -0.114 4.114 8 C -0.088 4.088 9 C 0.504 3.496 10 O -0.588 6.588 11 N -0.719 5.719 12 C 0.141 3.859 13 C 0.023 3.977 14 C -0.548 4.548 15 H 0.056 0.944 16 C 0.007 3.993 17 N -0.925 5.925 18 Si 0.964 3.036 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.268 1.268 22 C -0.075 4.075 23 C -0.166 4.166 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.412 0.588 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.266 0.734 39 H 0.140 0.860 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.694 -5.256 -13.427 26.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.248 6.248 4 C 0.068 3.932 5 C -0.231 4.231 6 C -0.095 4.095 7 C -0.115 4.115 8 C -0.127 4.127 9 C 0.292 3.708 10 O -0.469 6.469 11 N -0.371 5.371 12 C 0.017 3.983 13 C -0.015 4.015 14 C -0.586 4.586 15 H 0.075 0.925 16 C -0.192 4.192 17 N -0.564 5.564 18 Si 0.789 3.211 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.192 1.192 22 C -0.093 4.093 23 C -0.185 4.185 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.118 0.882 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.162 0.838 30 H 0.154 0.846 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.248 0.752 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.158 0.842 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.222 -5.168 -12.809 26.165 hybrid contribution 0.999 -0.050 0.748 1.249 sum -21.224 -5.218 -12.061 24.963 Atomic orbital electron populations 1.21803 0.91359 1.04192 1.03188 1.23055 0.96989 0.80881 1.02119 1.86038 1.18822 1.31228 1.88740 1.19175 0.82651 0.94581 0.96822 1.21399 0.94156 0.98715 1.08870 1.21061 0.94844 0.97129 0.96430 1.19438 0.94627 0.93686 1.03705 1.20666 0.92430 1.07604 0.92029 1.21359 0.81595 0.75192 0.92606 1.90679 1.56227 1.51643 1.48323 1.46168 1.08421 1.73143 1.09345 1.21166 0.95600 0.99384 0.82160 1.19134 0.89447 0.96318 0.96571 1.21474 0.93334 1.50534 0.93274 0.92542 1.25862 0.97084 0.94503 1.01751 1.70045 1.03376 1.50140 1.32884 0.85459 0.77869 0.78362 0.79441 1.19746 1.20434 1.19224 1.21053 0.92269 0.99370 0.96618 1.20592 0.95483 0.95325 1.07086 0.92101 0.91570 0.88159 0.90870 0.91786 0.83763 0.84562 0.85292 0.85263 0.75156 0.93976 0.93934 0.97182 0.97181 0.92526 0.84173 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.04 0.65 5.46 71.98 0.39 1.05 16 3 O -0.33 -7.45 10.14 -92.39 -0.94 -8.39 16 4 C 0.11 2.73 6.69 22.51 0.15 2.88 16 5 C -0.21 -4.74 9.04 22.37 0.20 -4.54 16 6 C -0.08 -1.78 9.69 22.25 0.22 -1.56 16 7 C -0.11 -2.75 4.37 -19.85 -0.09 -2.83 16 8 C -0.09 -1.85 5.83 29.10 0.17 -1.68 16 9 C 0.50 16.22 7.82 87.66 0.69 16.91 16 10 O -0.59 -24.53 16.03 -3.03 -0.05 -24.58 16 11 N -0.72 -24.08 5.56 -463.05 -2.57 -26.65 16 12 C 0.14 6.08 5.61 86.38 0.48 6.57 16 13 C 0.02 1.14 5.09 29.85 0.15 1.29 16 14 C -0.55 -30.75 9.11 25.60 0.23 -30.52 16 15 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 16 C 0.01 0.38 5.46 84.65 0.46 0.85 16 17 N -0.92 -54.04 13.29 21.45 0.28 -53.76 16 18 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 C -0.08 -1.79 9.69 22.25 0.22 -1.57 16 23 C -0.17 -4.01 9.99 22.37 0.22 -3.79 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.89 7.68 -2.39 -0.02 0.87 16 28 H 0.06 0.91 7.65 -2.39 -0.02 0.89 16 29 H 0.14 2.48 6.30 -2.91 -0.02 2.46 16 30 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 31 H 0.13 1.98 8.08 -2.39 -0.02 1.96 16 32 H 0.13 2.00 8.08 -2.39 -0.02 1.98 16 33 H 0.41 11.35 8.47 -92.71 -0.79 10.57 16 34 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 37 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 40 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -71.86 343.49 3.24 -68.62 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.24 Total: 16.76 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 4.24 Total: -17.78 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -2.29 Total: -80.41 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.99 Total: -32.96 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.86 3.24 -68.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273033959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.260 kcal (2) G-P(sol) polarization free energy of solvation -71.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds