Wall clock time and date at job start Mon Mar 30 2020 01:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99871 * 2 1 4 4 C 1.38737 * 120.05447 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94406 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05589 * 0.02585 * 5 4 3 7 7 C 1.50696 * 119.94433 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47290 * 90.00083 * 7 6 5 9 9 C 1.53006 * 109.47549 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47409 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00332 * 269.99727 * 10 9 8 12 12 C 1.34782 * 119.99923 * 89.99901 * 10 9 8 13 13 O 1.21686 * 119.99973 * 359.97438 * 12 10 9 14 14 C 1.46368 * 119.99863 * 179.97438 * 12 10 9 15 15 H 1.08003 * 120.00426 * 355.24782 * 14 12 10 16 16 C 1.40046 * 119.99975 * 175.24441 * 14 12 10 17 17 N 1.30675 * 120.00198 * 6.28303 * 16 14 12 18 18 Si 1.86802 * 120.00263 * 186.28430 * 16 14 12 19 19 H 1.48502 * 109.47290 * 94.98025 * 18 16 14 20 20 H 1.48501 * 109.47285 * 214.97981 * 18 16 14 21 21 H 1.48503 * 109.47113 * 334.98392 * 18 16 14 22 22 C 1.38274 * 120.11051 * 0.24968 * 6 5 4 23 23 C 1.38137 * 120.05486 * 359.45103 * 22 6 5 24 24 H 1.09000 * 109.47269 * 60.00105 * 1 2 3 25 25 H 1.08997 * 109.46932 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46822 * 299.99797 * 1 2 3 27 27 H 1.08000 * 120.02943 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.97512 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47372 * 209.99747 * 7 6 5 30 30 H 1.09004 * 109.47201 * 329.99504 * 7 6 5 31 31 H 1.09002 * 109.47331 * 299.99838 * 8 7 6 32 32 H 1.09001 * 109.47731 * 60.00037 * 8 7 6 33 33 H 1.09002 * 109.46565 * 300.00176 * 9 8 7 34 34 H 1.09004 * 109.47177 * 59.99276 * 9 8 7 35 35 H 1.08997 * 109.47336 * 89.99658 * 11 10 9 36 36 H 1.08994 * 109.47463 * 210.00237 * 11 10 9 37 37 H 1.09006 * 109.46639 * 330.00530 * 11 10 9 38 38 H 0.97001 * 120.00352 * 180.02562 * 17 16 14 39 39 H 1.07997 * 119.96606 * 179.70598 * 22 6 5 40 40 H 1.08000 * 120.03121 * 180.25399 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 6 4.2169 5.4745 -1.4392 9 6 4.9121 6.8375 -1.4381 10 7 5.1337 7.2739 -2.8189 11 6 6.3747 6.9157 -3.5101 12 6 4.1959 8.0049 -3.4534 13 8 3.1649 8.3021 -2.8794 14 6 4.4175 8.4414 -4.8328 15 1 5.3629 8.2441 -5.3163 16 6 3.4037 9.1147 -5.5257 17 7 2.3075 9.4620 -4.9049 18 14 3.6183 9.5162 -7.3374 19 1 2.9858 8.4527 -8.1585 20 1 2.9737 10.8205 -7.6351 21 1 5.0660 9.5946 -7.6589 22 6 1.9210 3.6047 0.0079 23 6 1.2915 2.3752 0.0011 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0209 0.3800 -0.0014 28 1 5.1345 2.5751 0.0000 29 1 3.3583 5.7457 0.5176 30 1 4.9442 4.9377 0.5162 31 1 4.8448 4.7473 -1.9542 32 1 3.2588 5.5554 -1.9527 33 1 4.2847 7.5649 -0.9230 34 1 5.8703 6.7563 -0.9249 35 1 6.2423 5.9640 -4.0248 36 1 6.6228 7.6899 -4.2361 37 1 7.1825 6.8264 -2.7836 38 1 1.6052 9.9281 -5.3849 39 1 1.3342 4.5114 0.0139 40 1 0.2129 2.3201 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274595965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:46 Heat of formation + Delta-G solvation = -58.898387 kcal Electronic energy + Delta-G solvation = -20695.988740 eV Core-core repulsion = 17475.816373 eV Total energy + Delta-G solvation = -3220.172367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.16369 -38.05286 -37.50803 -34.58906 -32.98868 -32.41303 -31.08228 -29.80181 -27.72850 -26.47887 -25.72584 -24.23068 -22.65523 -21.84265 -20.56529 -19.01501 -18.20354 -16.49059 -16.29550 -15.85111 -15.63145 -15.38559 -14.53542 -14.49566 -14.17940 -13.99322 -13.77273 -13.57089 -13.17385 -12.90540 -12.36525 -12.16468 -12.04716 -11.60495 -11.52457 -11.37887 -11.31676 -11.12512 -10.99444 -10.78816 -10.77342 -10.67895 -10.29387 -10.11746 -9.96929 -8.98512 -8.82844 -8.06798 -7.54492 -7.15575 -6.18215 -4.61793 1.35702 1.44692 3.14362 3.17076 3.21643 3.24794 3.76690 4.11013 4.58073 4.64969 4.74114 4.84696 4.95230 4.97095 5.01917 5.25710 5.30993 5.41307 5.51077 5.64161 5.69878 5.81639 5.85916 5.96613 6.04118 6.08135 6.16370 6.28415 6.33047 6.39605 6.52195 6.57439 6.62243 6.76701 6.82715 6.92073 7.32835 7.46926 7.68506 8.18150 8.39507 9.04501 9.46420 10.59989 10.79113 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.003396 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.155892 B = 8243.722668 C = 8839.795160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.113 3.887 4 C -0.151 4.151 5 C -0.080 4.080 6 C -0.106 4.106 7 C -0.075 4.075 8 C -0.125 4.125 9 C 0.128 3.872 10 N -0.650 5.650 11 C 0.103 3.897 12 C 0.556 3.444 13 O -0.578 6.578 14 C -0.545 4.545 15 H 0.072 0.928 16 C 0.087 3.913 17 N -0.767 5.767 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.076 4.076 23 C -0.204 4.204 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.267 0.733 39 H 0.127 0.873 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.146 -14.843 9.045 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.068 3.932 4 C -0.170 4.170 5 C -0.098 4.098 6 C -0.106 4.106 7 C -0.113 4.113 8 C -0.164 4.164 9 C 0.004 3.996 10 N -0.388 5.388 11 C -0.041 4.041 12 C 0.362 3.638 13 O -0.460 6.460 14 C -0.582 4.582 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.396 5.396 18 Si 0.730 3.270 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.189 1.189 22 C -0.094 4.094 23 C -0.223 4.223 24 H 0.074 0.926 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.145 0.855 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.481 -14.756 9.349 17.475 hybrid contribution -0.155 0.173 -1.031 1.057 sum 0.326 -14.583 8.318 16.792 Atomic orbital electron populations 1.23023 0.78614 1.03657 1.01430 1.86035 1.21227 1.27203 1.89081 1.19007 0.92397 0.83996 0.97774 1.20373 0.91286 0.98540 1.06792 1.20864 0.99792 0.90977 0.98190 1.19930 0.93567 0.95601 1.01498 1.20545 0.99874 0.92687 0.98197 1.21974 1.02028 0.97755 0.94632 1.21015 0.98402 0.94616 0.85572 1.47977 1.19919 1.58182 1.12714 1.21377 0.86344 0.99734 0.96654 1.18238 0.81604 0.76963 0.86984 1.90584 1.27558 1.59878 1.68004 1.21028 1.01248 1.38934 0.96941 0.90987 1.25734 0.94537 0.93606 0.99343 1.70031 1.05139 1.28318 1.36132 0.86396 0.79237 0.78171 0.83183 1.19825 1.20475 1.18866 1.20943 0.94267 0.97146 0.97021 1.21217 0.99892 0.92391 1.08811 0.92613 0.88454 0.92763 0.85502 0.85417 0.90975 0.91370 0.92659 0.91372 0.91095 0.93159 0.95228 0.91134 0.94180 0.92189 0.85529 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.85 10.50 -19.42 -0.20 -4.05 16 3 C 0.11 1.47 6.69 -39.21 -0.26 1.21 16 4 C -0.15 -1.89 9.99 -39.43 -0.39 -2.29 16 5 C -0.08 -1.00 9.69 -39.61 -0.38 -1.39 16 6 C -0.11 -1.46 5.14 -104.60 -0.54 -1.99 16 7 C -0.08 -1.05 5.34 -27.89 -0.15 -1.19 16 8 C -0.12 -2.18 5.52 -26.73 -0.15 -2.33 16 9 C 0.13 2.49 5.45 -4.04 -0.02 2.47 16 10 N -0.65 -14.99 2.87 -183.25 -0.53 -15.51 16 11 C 0.10 1.94 10.22 59.85 0.61 2.56 16 12 C 0.56 15.99 7.61 -12.99 -0.10 15.89 16 13 O -0.58 -18.69 14.62 5.20 0.08 -18.61 16 14 C -0.54 -15.45 8.76 -35.64 -0.31 -15.76 16 15 H 0.07 1.87 5.95 -52.48 -0.31 1.56 16 16 C 0.09 2.45 5.49 -17.37 -0.10 2.36 16 17 N -0.77 -23.09 11.85 55.55 0.66 -22.43 16 18 Si 0.91 20.22 29.56 -169.99 -5.03 15.20 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 21 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 22 C -0.08 -1.04 9.69 -39.61 -0.38 -1.43 16 23 C -0.20 -2.61 9.04 -39.43 -0.36 -2.96 16 24 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 25 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 27 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 28 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 30 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.07 1.52 7.42 -51.93 -0.39 1.14 16 34 H 0.05 0.81 7.89 -51.93 -0.41 0.40 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 1.37 6.04 -51.93 -0.31 1.06 16 37 H 0.04 0.62 7.89 -51.93 -0.41 0.21 16 38 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 39 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.13 1.33 6.30 -52.49 -0.33 0.99 16 LS Contribution 337.19 15.07 5.08 5.08 Total: -1.00 -34.99 337.19 -7.37 -42.36 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.89 Total: 1.61 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -1.54 Total: -3.65 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.13 Total: -37.94 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.13 Total: -22.66 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.03 Total: 15.20 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.99 -7.37 -42.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274595965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.536 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds