Wall clock time and date at job start Mon Mar 30 2020 01:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35899 * 116.99871 * 2 1 4 4 C 1.38737 * 120.05447 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94406 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05589 * 0.02585 * 5 4 3 7 7 C 1.50696 * 119.94433 * 179.97438 * 6 5 4 8 8 C 1.52993 * 109.47290 * 90.00083 * 7 6 5 9 9 C 1.53006 * 109.47549 * 180.02562 * 8 7 6 10 10 N 1.46494 * 109.47409 * 179.97438 * 9 8 7 11 11 C 1.46497 * 120.00332 * 269.99727 * 10 9 8 12 12 C 1.34782 * 119.99923 * 89.99901 * 10 9 8 13 13 O 1.21686 * 119.99973 * 359.97438 * 12 10 9 14 14 C 1.46368 * 119.99863 * 179.97438 * 12 10 9 15 15 H 1.08003 * 120.00426 * 355.24782 * 14 12 10 16 16 C 1.40046 * 119.99975 * 175.24441 * 14 12 10 17 17 N 1.30675 * 120.00198 * 6.28303 * 16 14 12 18 18 Si 1.86802 * 120.00263 * 186.28430 * 16 14 12 19 19 H 1.48502 * 109.47290 * 94.98025 * 18 16 14 20 20 H 1.48501 * 109.47285 * 214.97981 * 18 16 14 21 21 H 1.48503 * 109.47113 * 334.98392 * 18 16 14 22 22 C 1.38274 * 120.11051 * 0.24968 * 6 5 4 23 23 C 1.38137 * 120.05486 * 359.45103 * 22 6 5 24 24 H 1.09000 * 109.47269 * 60.00105 * 1 2 3 25 25 H 1.08997 * 109.46932 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46822 * 299.99797 * 1 2 3 27 27 H 1.08000 * 120.02943 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.97512 * 179.97438 * 5 4 3 29 29 H 1.09000 * 109.47372 * 209.99747 * 7 6 5 30 30 H 1.09004 * 109.47201 * 329.99504 * 7 6 5 31 31 H 1.09002 * 109.47331 * 299.99838 * 8 7 6 32 32 H 1.09001 * 109.47731 * 60.00037 * 8 7 6 33 33 H 1.09002 * 109.46565 * 300.00176 * 9 8 7 34 34 H 1.09004 * 109.47177 * 59.99276 * 9 8 7 35 35 H 1.08997 * 109.47336 * 89.99658 * 11 10 9 36 36 H 1.08994 * 109.47463 * 210.00237 * 11 10 9 37 37 H 1.09006 * 109.46639 * 330.00530 * 11 10 9 38 38 H 0.97001 * 120.00352 * 180.02562 * 17 16 14 39 39 H 1.07997 * 119.96606 * 179.70598 * 22 6 5 40 40 H 1.08000 * 120.03121 * 180.25399 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 6 4.2169 5.4745 -1.4392 9 6 4.9121 6.8375 -1.4381 10 7 5.1337 7.2739 -2.8189 11 6 6.3747 6.9157 -3.5101 12 6 4.1959 8.0049 -3.4534 13 8 3.1649 8.3021 -2.8794 14 6 4.4175 8.4414 -4.8328 15 1 5.3629 8.2441 -5.3163 16 6 3.4037 9.1147 -5.5257 17 7 2.3075 9.4620 -4.9049 18 14 3.6183 9.5162 -7.3374 19 1 2.9858 8.4527 -8.1585 20 1 2.9737 10.8205 -7.6351 21 1 5.0660 9.5946 -7.6589 22 6 1.9210 3.6047 0.0079 23 6 1.2915 2.3752 0.0011 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0209 0.3800 -0.0014 28 1 5.1345 2.5751 0.0000 29 1 3.3583 5.7457 0.5176 30 1 4.9442 4.9377 0.5162 31 1 4.8448 4.7473 -1.9542 32 1 3.2588 5.5554 -1.9527 33 1 4.2847 7.5649 -0.9230 34 1 5.8703 6.7563 -0.9249 35 1 6.2423 5.9640 -4.0248 36 1 6.6228 7.6899 -4.2361 37 1 7.1825 6.8264 -2.7836 38 1 1.6052 9.9281 -5.3849 39 1 1.3342 4.5114 0.0139 40 1 0.2129 2.3201 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274595965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:46 Heat of formation + Delta-G solvation = -81.069798 kcal Electronic energy + Delta-G solvation = -20696.950164 eV Core-core repulsion = 17475.816373 eV Total energy + Delta-G solvation = -3221.133792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09653 -39.74999 -38.72897 -36.33641 -34.59568 -34.43666 -32.05441 -31.05383 -28.81218 -28.11741 -27.26842 -25.76161 -23.65565 -23.23324 -21.68631 -20.93480 -19.10199 -18.42118 -17.68468 -17.25306 -16.66658 -16.64116 -16.11509 -15.98652 -15.58016 -15.40154 -15.10635 -14.57262 -14.34262 -14.21814 -13.98410 -13.42705 -13.26966 -13.16216 -13.04509 -12.86198 -12.77328 -12.64429 -12.58865 -12.15138 -12.06890 -11.97405 -11.79795 -11.74087 -11.45258 -10.92105 -9.96792 -9.76185 -9.16441 -8.92637 -8.28341 -6.82074 0.37673 0.42968 1.39333 1.40540 1.56219 2.24473 2.36984 2.47631 2.74281 2.97525 3.62277 3.81188 3.89355 3.95500 4.07589 4.27570 4.35085 4.40185 4.45225 4.46368 4.51159 4.64047 4.66732 4.70057 4.75737 4.80113 4.89645 5.01402 5.06026 5.08378 5.21353 5.32126 5.38959 5.39448 5.42415 5.73609 5.81149 5.82316 6.17906 6.42564 6.47497 6.89214 7.45012 8.49763 8.69247 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021664 B = 0.003396 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.155892 B = 8243.722668 C = 8839.795160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.106 3.894 4 C -0.159 4.159 5 C -0.077 4.077 6 C -0.123 4.123 7 C -0.064 4.064 8 C -0.109 4.109 9 C 0.125 3.875 10 N -0.654 5.654 11 C 0.100 3.900 12 C 0.537 3.463 13 O -0.631 6.631 14 C -0.571 4.571 15 H 0.093 0.907 16 C 0.027 3.973 17 N -0.823 5.823 18 Si 0.995 3.005 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.246 1.246 22 C -0.096 4.096 23 C -0.212 4.212 24 H 0.056 0.944 25 H 0.122 0.878 26 H 0.063 0.937 27 H 0.146 0.854 28 H 0.153 0.847 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.018 0.982 33 H 0.039 0.961 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.273 0.727 39 H 0.118 0.882 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.200 -16.396 8.412 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.061 3.939 4 C -0.177 4.177 5 C -0.095 4.095 6 C -0.123 4.123 7 C -0.102 4.102 8 C -0.149 4.149 9 C 0.002 3.998 10 N -0.390 5.390 11 C -0.043 4.043 12 C 0.342 3.658 13 O -0.518 6.518 14 C -0.608 4.608 15 H 0.110 0.890 16 C -0.188 4.188 17 N -0.452 5.452 18 Si 0.814 3.186 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.169 1.169 22 C -0.114 4.114 23 C -0.230 4.230 24 H 0.075 0.925 25 H 0.140 0.860 26 H 0.081 0.919 27 H 0.163 0.837 28 H 0.171 0.829 29 H 0.082 0.918 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.114 0.886 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.137 0.863 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.588 -16.347 8.738 18.716 hybrid contribution -0.796 0.567 -0.753 1.234 sum 1.791 -15.780 7.984 17.776 Atomic orbital electron populations 1.23308 0.76782 1.05545 1.01924 1.86023 1.23185 1.26667 1.88875 1.19229 0.92958 0.84362 0.97387 1.20695 0.91428 0.99346 1.06256 1.21128 1.00997 0.90314 0.97067 1.19989 0.93623 0.95962 1.02767 1.20435 1.01392 0.92647 0.95715 1.21771 0.99284 0.97029 0.96772 1.21223 1.00273 0.94515 0.83794 1.47893 1.20191 1.56969 1.13989 1.21575 0.85465 0.99721 0.97556 1.18657 0.81919 0.77498 0.87691 1.90533 1.29991 1.62093 1.69219 1.21562 1.02491 1.39340 0.97378 0.88956 1.27008 0.93694 0.92742 1.05317 1.70207 1.06546 1.29518 1.38955 0.85052 0.80182 0.78055 0.75293 1.19024 1.19780 1.16858 1.21069 0.94835 0.97466 0.98018 1.21387 1.00869 0.92065 1.08704 0.92505 0.85955 0.91875 0.83651 0.82893 0.91831 0.88240 0.91493 0.96317 0.94251 0.88614 0.94143 0.92034 0.89927 0.91739 0.86349 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -7.53 10.50 -92.42 -0.97 -8.50 16 3 C 0.11 2.64 6.69 22.51 0.15 2.80 16 4 C -0.16 -3.70 9.99 22.37 0.22 -3.47 16 5 C -0.08 -1.78 9.69 22.25 0.22 -1.57 16 6 C -0.12 -3.33 5.14 -19.85 -0.10 -3.43 16 7 C -0.06 -1.74 5.34 29.84 0.16 -1.58 16 8 C -0.11 -3.84 5.52 30.59 0.17 -3.67 16 9 C 0.13 4.82 5.45 86.38 0.47 5.29 16 10 N -0.65 -30.13 2.87 -851.90 -2.45 -32.57 16 11 C 0.10 3.53 10.22 127.77 1.31 4.83 16 12 C 0.54 31.84 7.61 86.36 0.66 32.50 16 13 O -0.63 -43.13 14.62 -4.31 -0.06 -43.19 16 14 C -0.57 -32.80 8.76 24.83 0.22 -32.58 16 15 H 0.09 4.73 5.95 -2.91 -0.02 4.72 16 16 C 0.03 1.54 5.49 85.30 0.47 2.01 16 17 N -0.82 -51.27 11.85 21.84 0.26 -51.02 16 18 Si 0.99 41.49 29.56 68.60 2.03 43.52 16 19 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 21 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 22 C -0.10 -2.72 9.69 22.25 0.22 -2.50 16 23 C -0.21 -5.39 9.04 22.36 0.20 -5.19 16 24 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 25 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 27 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 28 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 29 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 30 H 0.10 2.08 8.08 -2.38 -0.02 2.06 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.04 1.75 7.42 -2.39 -0.02 1.74 16 34 H 0.10 2.80 7.89 -2.38 -0.02 2.78 16 35 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 2.28 6.04 -2.39 -0.01 2.26 16 37 H 0.08 2.22 7.89 -2.38 -0.02 2.20 16 38 H 0.27 15.40 8.29 -92.71 -0.77 14.63 16 39 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.14 2.96 6.30 -2.91 -0.02 2.94 16 Total: -1.00 -80.25 337.19 5.30 -74.96 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 1.02 Total: 21.98 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 5.47 Total: -5.18 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -2.19 Total: -83.59 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -1.03 Total: -51.70 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -80.25 5.30 -74.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274595965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.114 kcal (2) G-P(sol) polarization free energy of solvation -80.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds