Wall clock time and date at job start Mon Mar 30 2020 02:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 114.00364 * 2 1 4 4 C 1.52992 * 109.47350 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46780 * 65.00660 * 4 3 2 6 6 C 1.46496 * 120.00310 * 89.99869 * 5 4 3 7 7 C 1.52995 * 109.47070 * 270.00042 * 6 5 4 8 8 C 1.50707 * 109.47301 * 179.97438 * 7 6 5 9 9 C 1.38238 * 119.99792 * 90.00016 * 8 7 6 10 10 C 1.38235 * 119.99712 * 179.97438 * 9 8 7 11 11 C 1.38234 * 120.00220 * 359.97124 * 10 9 8 12 12 C 1.38233 * 120.00037 * 0.28719 * 11 10 9 13 13 C 1.38234 * 120.00179 * 269.97953 * 8 7 6 14 14 C 1.34776 * 119.99805 * 269.99277 * 5 4 3 15 15 O 1.21690 * 120.00170 * 179.97438 * 14 5 4 16 16 C 1.46376 * 120.00212 * 0.02562 * 14 5 4 17 17 H 1.07999 * 119.99798 * 359.97438 * 16 14 5 18 18 C 1.40044 * 119.99927 * 179.97438 * 16 14 5 19 19 N 1.30671 * 120.00650 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99832 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47074 * 90.00224 * 20 18 16 22 22 H 1.48503 * 109.47256 * 210.00177 * 20 18 16 23 23 H 1.48497 * 109.47232 * 330.00566 * 20 18 16 24 24 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99357 * 1 2 3 26 26 H 1.09001 * 109.47130 * 59.99509 * 1 2 3 27 27 H 1.09010 * 109.46492 * 60.00379 * 3 2 1 28 28 H 1.08997 * 109.47556 * 300.00698 * 3 2 1 29 29 H 1.09003 * 109.47751 * 305.00501 * 4 3 2 30 30 H 1.09008 * 109.47405 * 185.00135 * 4 3 2 31 31 H 1.08995 * 109.47623 * 149.99812 * 6 5 4 32 32 H 1.09004 * 109.47046 * 29.99819 * 6 5 4 33 33 H 1.09005 * 109.47610 * 60.00011 * 7 6 5 34 34 H 1.09000 * 109.47256 * 299.99352 * 7 6 5 35 35 H 1.08005 * 120.00068 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.99770 * 179.97438 * 10 9 8 37 37 H 1.08002 * 119.99744 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.00395 * 179.72811 * 12 11 10 39 39 H 1.07999 * 119.99968 * 359.97438 * 13 8 7 40 40 H 0.96991 * 120.00627 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9765 0.5640 -1.2510 6 6 4.2881 1.3999 -2.4130 7 6 3.0250 1.5957 -3.2538 8 6 3.3453 2.4561 -4.4489 9 6 3.7618 1.8710 -5.6301 10 6 4.0551 2.6601 -6.7265 11 6 3.9314 4.0343 -6.6419 12 6 3.5202 4.6198 -5.4592 13 6 3.2224 3.8303 -4.3642 14 6 4.0958 -0.7759 -1.3333 15 8 4.4618 -1.2915 -2.3731 16 6 3.7841 -1.6112 -0.1724 17 1 3.4589 -1.1537 0.7503 18 6 3.9075 -3.0035 -0.2582 19 7 4.3015 -3.5571 -1.3743 20 14 3.5104 -4.0694 1.2236 21 1 2.0736 -4.4439 1.1932 22 1 4.3432 -5.2984 1.1868 23 1 3.7985 -3.3133 2.4688 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8465 -0.8899 29 1 3.8508 0.5684 0.8426 30 1 3.9785 2.1765 0.0902 31 1 5.0541 0.9127 -3.0162 32 1 4.6538 2.3697 -2.0755 33 1 2.2589 2.0831 -2.6507 34 1 2.6593 0.6260 -3.5915 35 1 3.8579 0.7972 -5.6963 36 1 4.3808 2.2030 -7.6492 37 1 4.1602 4.6508 -7.4987 38 1 3.4278 5.6937 -5.3917 39 1 2.8963 4.2874 -3.4416 40 1 4.3873 -4.5214 -1.4336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274699919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:23 Heat of formation + Delta-G solvation = -55.857338 kcal Electronic energy + Delta-G solvation = -21800.940784 eV Core-core repulsion = 18580.900287 eV Total energy + Delta-G solvation = -3220.040498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.16840 -38.05501 -36.70529 -34.35090 -32.65132 -32.29843 -30.71341 -29.33437 -27.77394 -26.00026 -25.60203 -23.04733 -22.38094 -22.04781 -20.63784 -18.97492 -16.69574 -16.50580 -16.12044 -15.33905 -15.10724 -14.97195 -14.92091 -14.50079 -14.10036 -13.99069 -13.29950 -13.20726 -12.75267 -12.62141 -12.43870 -12.22290 -11.81586 -11.40979 -11.30615 -11.23480 -11.10606 -10.92354 -10.83021 -10.65195 -10.52487 -10.25197 -10.06263 -9.86933 -8.96321 -8.75934 -8.70483 -8.53018 -7.42936 -7.17061 -6.03634 -4.40943 1.53770 1.56699 3.23074 3.29604 3.32899 3.95422 4.20676 4.39667 4.58449 4.75022 5.02909 5.08341 5.17954 5.33540 5.52737 5.60421 5.65199 5.71112 5.76307 5.79861 5.82180 5.84761 5.88765 5.97729 6.09194 6.15159 6.15422 6.27819 6.30172 6.52422 6.61691 6.62428 6.67309 6.80993 6.96890 7.20371 7.63930 7.68165 7.89455 8.32562 8.54382 9.21661 9.55965 10.73711 10.92947 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021559 B = 0.004965 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.442709 B = 5637.798980 C = 6407.250862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.345 6.345 3 C 0.042 3.958 4 C 0.128 3.872 5 N -0.639 5.639 6 C 0.136 3.864 7 C -0.097 4.097 8 C -0.066 4.066 9 C -0.113 4.113 10 C -0.120 4.120 11 C -0.135 4.135 12 C -0.123 4.123 13 C -0.122 4.122 14 C 0.562 3.438 15 O -0.580 6.580 16 C -0.513 4.513 17 H 0.075 0.925 18 C 0.086 3.914 19 N -0.774 5.774 20 Si 0.903 3.097 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.266 1.266 24 H 0.080 0.920 25 H 0.028 0.972 26 H 0.029 0.971 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.510 13.699 -1.965 14.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.263 6.263 3 C -0.037 4.037 4 C 0.003 3.997 5 N -0.376 5.376 6 C 0.012 3.988 7 C -0.136 4.136 8 C -0.067 4.067 9 C -0.131 4.131 10 C -0.138 4.138 11 C -0.153 4.153 12 C -0.141 4.141 13 C -0.140 4.140 14 C 0.369 3.631 15 O -0.463 6.463 16 C -0.550 4.550 17 H 0.093 0.907 18 C -0.132 4.132 19 N -0.404 5.404 20 Si 0.728 3.272 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.190 1.190 24 H 0.098 0.902 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.119 13.048 -2.625 13.932 hybrid contribution -0.680 -0.148 0.721 1.002 sum -4.799 12.900 -1.903 13.895 Atomic orbital electron populations 1.22658 0.83534 1.02115 0.98387 1.88378 1.17198 1.25856 1.94849 1.23172 0.96398 0.85733 0.98392 1.21269 0.90762 0.97578 0.90101 1.48068 1.72537 1.07269 1.09724 1.20935 0.95338 0.93823 0.88742 1.21185 0.99654 0.99131 0.93638 1.20085 0.97237 0.93888 0.95456 1.21238 0.98729 1.00492 0.92622 1.21145 1.00185 0.93871 0.98572 1.21055 1.01455 0.94976 0.97800 1.21066 1.00246 0.99362 0.93468 1.21045 1.01190 0.93310 0.98500 1.18223 0.77168 0.78488 0.89247 1.90585 1.51950 1.71348 1.32439 1.20916 1.45719 0.90376 0.97958 0.90712 1.25705 0.93085 0.98511 0.95888 1.70032 1.34559 1.10716 1.25101 0.86461 0.78682 0.79432 0.82615 1.19985 1.20885 1.19047 0.90171 0.95318 0.95216 0.94448 0.94220 0.89301 0.91755 0.90844 0.93163 0.91804 0.90342 0.85645 0.86369 0.86644 0.86568 0.86420 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.35 -6.93 8.41 -35.23 -0.30 -7.23 16 3 C 0.04 0.69 6.28 37.15 0.23 0.93 16 4 C 0.13 2.32 5.75 -4.04 -0.02 2.30 16 5 N -0.64 -14.26 2.46 -175.35 -0.43 -14.69 16 6 C 0.14 2.65 5.43 -4.05 -0.02 2.63 16 7 C -0.10 -1.72 5.65 -27.88 -0.16 -1.88 16 8 C -0.07 -1.03 5.13 -104.62 -0.54 -1.57 16 9 C -0.11 -1.75 9.70 -39.58 -0.38 -2.14 16 10 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 11 C -0.13 -1.62 10.05 -39.58 -0.40 -2.01 16 12 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 13 C -0.12 -1.64 9.70 -39.58 -0.38 -2.02 16 14 C 0.56 15.86 7.33 -12.99 -0.10 15.76 16 15 O -0.58 -18.69 14.60 5.20 0.08 -18.61 16 16 C -0.51 -14.40 7.50 -35.63 -0.27 -14.67 16 17 H 0.07 1.97 5.39 -52.49 -0.28 1.69 16 18 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 19 N -0.77 -23.50 11.83 55.55 0.66 -22.85 16 20 Si 0.90 20.72 29.56 -169.99 -5.02 15.70 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 24 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.04 0.52 8.14 -51.92 -0.42 0.09 16 28 H 0.04 0.63 6.11 -51.93 -0.32 0.32 16 29 H 0.09 1.73 6.09 -51.93 -0.32 1.41 16 30 H 0.06 0.94 7.89 -51.92 -0.41 0.53 16 31 H 0.07 1.63 7.42 -51.93 -0.39 1.24 16 32 H 0.05 0.83 7.89 -51.93 -0.41 0.42 16 33 H 0.06 1.05 6.09 -51.93 -0.32 0.73 16 34 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 35 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.26 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -34.68 333.41 -7.60 -42.28 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.80 Total: 2.98 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.81 Total: -2.60 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.23 Total: -37.54 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.22 Total: -25.84 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.68 -7.60 -42.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274699919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.575 kcal (2) G-P(sol) polarization free energy of solvation -34.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds