Wall clock time and date at job start Mon Mar 30 2020 02:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42904 * 114.00364 * 2 1 4 4 C 1.52992 * 109.47350 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46780 * 65.00660 * 4 3 2 6 6 C 1.46496 * 120.00310 * 89.99869 * 5 4 3 7 7 C 1.52995 * 109.47070 * 270.00042 * 6 5 4 8 8 C 1.50707 * 109.47301 * 179.97438 * 7 6 5 9 9 C 1.38238 * 119.99792 * 90.00016 * 8 7 6 10 10 C 1.38235 * 119.99712 * 179.97438 * 9 8 7 11 11 C 1.38234 * 120.00220 * 359.97124 * 10 9 8 12 12 C 1.38233 * 120.00037 * 0.28719 * 11 10 9 13 13 C 1.38234 * 120.00179 * 269.97953 * 8 7 6 14 14 C 1.34776 * 119.99805 * 269.99277 * 5 4 3 15 15 O 1.21690 * 120.00170 * 179.97438 * 14 5 4 16 16 C 1.46376 * 120.00212 * 0.02562 * 14 5 4 17 17 H 1.07999 * 119.99798 * 359.97438 * 16 14 5 18 18 C 1.40044 * 119.99927 * 179.97438 * 16 14 5 19 19 N 1.30671 * 120.00650 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99832 * 179.97438 * 18 16 14 21 21 H 1.48506 * 109.47074 * 90.00224 * 20 18 16 22 22 H 1.48503 * 109.47256 * 210.00177 * 20 18 16 23 23 H 1.48497 * 109.47232 * 330.00566 * 20 18 16 24 24 H 1.08998 * 109.47338 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99357 * 1 2 3 26 26 H 1.09001 * 109.47130 * 59.99509 * 1 2 3 27 27 H 1.09010 * 109.46492 * 60.00379 * 3 2 1 28 28 H 1.08997 * 109.47556 * 300.00698 * 3 2 1 29 29 H 1.09003 * 109.47751 * 305.00501 * 4 3 2 30 30 H 1.09008 * 109.47405 * 185.00135 * 4 3 2 31 31 H 1.08995 * 109.47623 * 149.99812 * 6 5 4 32 32 H 1.09004 * 109.47046 * 29.99819 * 6 5 4 33 33 H 1.09005 * 109.47610 * 60.00011 * 7 6 5 34 34 H 1.09000 * 109.47256 * 299.99352 * 7 6 5 35 35 H 1.08005 * 120.00068 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.99770 * 179.97438 * 10 9 8 37 37 H 1.08002 * 119.99744 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.00395 * 179.72811 * 12 11 10 39 39 H 1.07999 * 119.99968 * 359.97438 * 13 8 7 40 40 H 0.96991 * 120.00627 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9765 0.5640 -1.2510 6 6 4.2881 1.3999 -2.4130 7 6 3.0250 1.5957 -3.2538 8 6 3.3453 2.4561 -4.4489 9 6 3.7618 1.8710 -5.6301 10 6 4.0551 2.6601 -6.7265 11 6 3.9314 4.0343 -6.6419 12 6 3.5202 4.6198 -5.4592 13 6 3.2224 3.8303 -4.3642 14 6 4.0958 -0.7759 -1.3333 15 8 4.4618 -1.2915 -2.3731 16 6 3.7841 -1.6112 -0.1724 17 1 3.4589 -1.1537 0.7503 18 6 3.9075 -3.0035 -0.2582 19 7 4.3015 -3.5571 -1.3743 20 14 3.5104 -4.0694 1.2236 21 1 2.0736 -4.4439 1.1932 22 1 4.3432 -5.2984 1.1868 23 1 3.7985 -3.3133 2.4688 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8465 -0.8899 29 1 3.8508 0.5684 0.8426 30 1 3.9785 2.1765 0.0902 31 1 5.0541 0.9127 -3.0162 32 1 4.6538 2.3697 -2.0755 33 1 2.2589 2.0831 -2.6507 34 1 2.6593 0.6260 -3.5915 35 1 3.8579 0.7972 -5.6963 36 1 4.3808 2.2030 -7.6492 37 1 4.1602 4.6508 -7.4987 38 1 3.4278 5.6937 -5.3917 39 1 2.8963 4.2874 -3.4416 40 1 4.3873 -4.5214 -1.4336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274699919.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:23 Heat of formation + Delta-G solvation = -78.228451 kcal Electronic energy + Delta-G solvation = -21801.910868 eV Core-core repulsion = 18580.900287 eV Total energy + Delta-G solvation = -3221.010582 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40848 -39.64932 -38.29868 -36.16936 -34.47817 -34.01488 -31.74959 -30.71315 -29.39560 -27.85908 -26.95209 -24.58983 -23.57077 -23.41377 -21.86093 -20.88292 -18.46156 -17.83586 -17.58728 -17.12677 -16.48167 -16.37556 -16.15149 -15.87278 -15.76704 -15.57374 -14.73096 -14.47455 -14.27315 -13.95632 -13.79780 -13.68201 -13.31447 -13.10371 -12.96702 -12.78499 -12.66244 -12.57450 -12.26879 -12.03099 -11.99126 -11.81066 -11.75925 -11.51039 -10.82541 -10.29985 -9.80243 -9.70665 -9.62132 -8.98072 -8.16083 -6.61356 0.46780 0.51846 1.40687 1.42525 1.56395 2.30140 2.56486 2.81822 2.96178 3.22169 3.79009 3.89289 3.98198 4.18401 4.20244 4.31324 4.33821 4.39235 4.46851 4.52508 4.61305 4.63367 4.67621 4.71395 4.72296 4.74665 4.91871 4.96064 5.10065 5.15311 5.22441 5.28879 5.52092 5.59825 5.63514 5.79351 5.93931 6.15976 6.31942 6.49290 6.64905 7.04792 7.55573 8.62650 8.82479 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021559 B = 0.004965 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.442709 B = 5637.798980 C = 6407.250862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.393 6.393 3 C 0.043 3.957 4 C 0.120 3.880 5 N -0.640 5.640 6 C 0.139 3.861 7 C -0.078 4.078 8 C -0.087 4.087 9 C -0.142 4.142 10 C -0.126 4.126 11 C -0.129 4.129 12 C -0.118 4.118 13 C -0.121 4.121 14 C 0.547 3.453 15 O -0.637 6.637 16 C -0.528 4.528 17 H 0.090 0.910 18 C 0.027 3.973 19 N -0.830 5.830 20 Si 0.986 3.014 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.248 1.248 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.109 0.891 31 H 0.032 0.968 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.027 0.973 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.141 0.859 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 17.080 -0.465 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.312 6.312 3 C -0.035 4.035 4 C -0.003 4.003 5 N -0.375 5.375 6 C 0.015 3.985 7 C -0.117 4.117 8 C -0.088 4.088 9 C -0.160 4.160 10 C -0.144 4.144 11 C -0.147 4.147 12 C -0.135 4.135 13 C -0.139 4.139 14 C 0.354 3.646 15 O -0.525 6.525 16 C -0.564 4.564 17 H 0.108 0.892 18 C -0.187 4.187 19 N -0.462 5.462 20 Si 0.807 3.193 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.171 1.171 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.046 0.954 35 H 0.113 0.887 36 H 0.152 0.848 37 H 0.167 0.833 38 H 0.171 0.829 39 H 0.159 0.841 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.161 16.500 -1.096 17.323 hybrid contribution -0.358 -1.049 0.184 1.124 sum -5.520 15.451 -0.912 16.433 Atomic orbital electron populations 1.22774 0.81622 1.02325 1.00172 1.88297 1.19553 1.28119 1.95255 1.23217 0.94801 0.84948 1.00513 1.21596 0.92510 0.99011 0.87198 1.47858 1.71620 1.05994 1.12030 1.21021 0.95336 0.94358 0.87765 1.20879 0.98899 0.97292 0.94622 1.19943 0.99412 0.95027 0.94431 1.21196 1.00967 0.99523 0.94350 1.21364 0.99925 0.94826 0.98255 1.21488 0.99709 0.94339 0.99117 1.21513 0.98377 1.01099 0.92547 1.21280 1.00530 0.91896 1.00180 1.18558 0.76675 0.80711 0.88639 1.90538 1.54291 1.73431 1.34235 1.21314 1.45582 0.91069 0.98460 0.89211 1.26885 0.92314 1.00176 0.99285 1.70228 1.36526 1.11231 1.28202 0.85197 0.78557 0.77173 0.78419 1.19229 1.20322 1.17131 0.90936 0.92248 0.94526 0.90508 0.93545 0.90914 0.87291 0.94915 0.89128 0.89962 0.95416 0.88727 0.84824 0.83294 0.82901 0.84089 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.39 -15.48 8.41 -148.98 -1.25 -16.73 16 3 C 0.04 1.33 6.28 71.98 0.45 1.78 16 4 C 0.12 4.16 5.75 86.38 0.50 4.66 16 5 N -0.64 -29.15 2.46 -826.91 -2.03 -31.18 16 6 C 0.14 5.56 5.43 86.38 0.47 6.03 16 7 C -0.08 -2.87 5.65 29.85 0.17 -2.71 16 8 C -0.09 -2.76 5.13 -19.86 -0.10 -2.87 16 9 C -0.14 -4.69 9.70 22.27 0.22 -4.47 16 10 C -0.13 -3.26 10.05 22.27 0.22 -3.04 16 11 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 12 C -0.12 -2.35 10.05 22.27 0.22 -2.12 16 13 C -0.12 -2.91 9.70 22.27 0.22 -2.70 16 14 C 0.55 32.48 7.33 86.36 0.63 33.11 16 15 O -0.64 -44.18 14.60 -4.32 -0.06 -44.24 16 16 C -0.53 -30.49 7.50 24.83 0.19 -30.30 16 17 H 0.09 4.76 5.39 -2.91 -0.02 4.75 16 18 C 0.03 1.54 5.50 85.30 0.47 2.01 16 19 N -0.83 -53.04 11.83 21.83 0.26 -52.79 16 20 Si 0.99 43.29 29.56 68.60 2.03 45.32 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 24 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 28 H 0.05 1.36 6.11 -2.39 -0.01 1.35 16 29 H 0.07 2.76 6.09 -2.39 -0.01 2.74 16 30 H 0.11 2.77 7.89 -2.38 -0.02 2.75 16 31 H 0.03 1.56 7.42 -2.39 -0.02 1.54 16 32 H 0.09 2.85 7.89 -2.38 -0.02 2.83 16 33 H 0.08 2.64 6.09 -2.38 -0.01 2.63 16 34 H 0.03 1.27 8.09 -2.39 -0.02 1.25 16 35 H 0.09 3.57 8.06 -2.91 -0.02 3.55 16 36 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 37 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 39 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 40 H 0.27 15.63 8.29 -92.72 -0.77 14.86 16 Total: -1.00 -82.65 333.41 5.09 -77.56 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 1.02 Total: 23.05 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.12 Total: -0.99 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -1.77 Total: -83.96 kcal Atomic # 8 Polarization: -59.66 SS G_CDS: -1.32 Total: -60.98 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -82.65 5.09 -77.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274699919.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.667 kcal (2) G-P(sol) polarization free energy of solvation -82.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds