Wall clock time and date at job start Mon Mar 30 2020 01:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 114.00414 * 2 1 4 4 C 1.50697 * 109.47399 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00270 * 270.02581 * 4 3 2 6 6 C 1.38215 * 119.99994 * 179.97438 * 5 4 3 7 7 C 1.38255 * 119.99952 * 359.81618 * 6 5 4 8 8 C 1.38211 * 120.00215 * 0.41824 * 7 6 5 9 9 C 1.50701 * 120.00328 * 179.81118 * 8 7 6 10 10 C 1.50699 * 109.46837 * 269.72477 * 9 8 7 11 11 O 1.21283 * 120.00005 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99772 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99873 * 359.97438 * 12 10 9 14 14 C 1.46498 * 119.99828 * 180.27730 * 12 10 9 15 15 C 1.50702 * 109.47034 * 269.71967 * 14 12 10 16 16 H 1.08002 * 119.99777 * 0.02562 * 15 14 12 17 17 C 1.37872 * 120.00392 * 180.02562 * 15 14 12 18 18 N 1.31519 * 119.99817 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00435 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46989 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47120 * 119.99499 * 19 17 15 22 22 H 1.48497 * 109.47257 * 239.99831 * 19 17 15 23 23 C 1.38216 * 119.99838 * 90.00369 * 4 3 2 24 24 H 1.09000 * 109.46724 * 59.99504 * 1 2 3 25 25 H 1.08994 * 109.47436 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46811 * 299.99834 * 1 2 3 27 27 H 1.09009 * 109.46528 * 60.00414 * 3 2 1 28 28 H 1.08990 * 109.47189 * 300.00255 * 3 2 1 29 29 H 1.08004 * 119.99836 * 359.97438 * 5 4 3 30 30 H 1.07999 * 119.99830 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.00028 * 180.22751 * 7 6 5 32 32 H 1.08999 * 109.47046 * 149.72008 * 9 8 7 33 33 H 1.08997 * 109.46721 * 29.72540 * 9 8 7 34 34 H 1.08999 * 109.46892 * 90.00594 * 13 12 10 35 35 H 1.09000 * 109.46803 * 209.99767 * 13 12 10 36 36 H 1.09000 * 109.47214 * 330.00561 * 13 12 10 37 37 H 1.08993 * 109.47575 * 29.72405 * 14 12 10 38 38 H 1.09001 * 109.46870 * 149.72361 * 14 12 10 39 39 H 0.96996 * 120.00179 * 180.02562 * 18 17 15 40 40 H 1.07997 * 119.99828 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2012 1.1315 1.1982 6 6 5.5790 1.0218 1.1988 7 6 6.2683 0.9631 0.0017 8 6 5.5803 1.0229 -1.1955 9 6 6.3319 0.9633 -2.5004 10 6 6.6942 2.3598 -2.9356 11 8 6.3732 3.3100 -2.2536 12 7 7.3740 2.5530 -4.0832 13 6 7.7612 1.4052 -4.9072 14 6 7.7315 3.9102 -4.5032 15 6 6.6304 4.4766 -5.3622 16 1 5.7519 3.8849 -5.5736 17 6 6.7443 5.7501 -5.8781 18 7 7.8138 6.4708 -5.6201 19 14 5.3791 6.4525 -6.9421 20 1 4.2932 5.4490 -7.0802 21 1 4.8398 7.6820 -6.3076 22 1 5.9193 6.7845 -8.2850 23 6 4.2020 1.1317 -1.1961 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6887 1.8463 0.8901 28 1 1.6887 1.8463 -0.8899 29 1 3.6625 1.1743 2.1334 30 1 6.1169 0.9785 2.1343 31 1 7.3445 0.8737 0.0021 32 1 5.7045 0.4971 -3.2601 33 1 7.2408 0.3761 -2.3695 34 1 6.9700 1.1902 -5.6255 35 1 8.6834 1.6356 -5.4407 36 1 7.9182 0.5359 -4.2687 37 1 7.8661 4.5392 -3.6234 38 1 8.6594 3.8811 -5.0745 39 1 7.8938 7.3668 -5.9828 40 1 3.6640 1.1746 -2.1316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275085504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:15 Heat of formation + Delta-G solvation = -58.076393 kcal Electronic energy + Delta-G solvation = -20953.885956 eV Core-core repulsion = 17733.749233 eV Total energy + Delta-G solvation = -3220.136723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.75515 -38.61538 -37.54392 -34.76977 -33.01789 -32.46221 -31.57300 -28.54312 -27.42342 -26.91329 -25.55257 -25.36453 -22.95144 -21.93125 -20.69047 -18.35561 -16.63619 -16.54293 -16.40982 -16.22648 -16.09973 -15.54435 -15.15899 -15.06584 -14.33028 -14.23912 -13.87208 -12.89837 -12.85061 -12.71486 -12.59695 -12.34045 -12.24396 -12.09085 -11.89988 -11.56140 -11.53045 -11.22237 -10.92771 -10.85102 -10.79682 -10.54825 -10.14160 -9.84675 -9.59622 -9.00412 -8.68907 -8.44104 -8.41866 -7.61372 -6.03247 -4.07661 1.40978 1.55939 3.30025 3.37049 3.40413 3.48072 3.56158 3.96751 4.23758 4.46534 4.78540 4.82127 4.97547 5.12495 5.14366 5.20878 5.25655 5.27963 5.32957 5.36297 5.45101 5.46980 5.58300 5.67828 5.73788 5.77299 5.98481 6.14218 6.20182 6.20800 6.56938 6.65961 6.77091 6.97043 7.05878 7.14995 7.45715 7.56955 7.93469 8.25185 8.44030 8.92251 9.13306 9.57393 11.04939 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016852 B = 0.004205 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.162402 B = 6656.925006 C = 7574.966058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.104 3.896 4 C -0.094 4.094 5 C -0.105 4.105 6 C -0.123 4.123 7 C -0.099 4.099 8 C -0.056 4.056 9 C -0.105 4.105 10 C 0.505 3.495 11 O -0.534 6.534 12 N -0.605 5.605 13 C 0.085 3.915 14 C 0.245 3.755 15 C -0.524 4.524 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.082 4.082 24 H 0.041 0.959 25 H 0.085 0.915 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.467 -15.026 10.115 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.028 3.972 4 C -0.094 4.094 5 C -0.123 4.123 6 C -0.141 4.141 7 C -0.117 4.117 8 C -0.057 4.057 9 C -0.145 4.145 10 C 0.291 3.709 11 O -0.410 6.410 12 N -0.338 5.338 13 C -0.059 4.059 14 C 0.126 3.874 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.100 4.100 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.430 -14.487 10.416 19.328 hybrid contribution -0.878 0.748 -0.792 1.399 sum -8.309 -13.739 9.624 18.719 Atomic orbital electron populations 1.22744 0.81240 1.02651 1.00013 1.87964 1.19397 1.27760 1.95418 1.21354 0.90120 0.84779 1.00986 1.19429 0.93610 1.02755 0.93583 1.20925 0.94347 0.99936 0.97083 1.21015 0.94131 1.01109 0.97841 1.21005 0.99648 0.99062 0.91972 1.19348 0.93363 0.98856 0.94088 1.20776 1.01108 0.97009 0.95584 1.20171 0.79047 0.90128 0.81512 1.90690 1.53085 1.43261 1.54003 1.48163 1.54994 1.09380 1.21235 1.21634 1.00630 0.88477 0.95189 1.19297 0.95660 0.76438 0.96009 1.21474 1.04550 0.99880 1.30391 0.92470 1.24939 0.95946 0.96675 0.96619 1.69944 1.27626 1.10645 1.45253 0.86448 0.82019 0.79097 0.79894 1.19837 1.20873 1.20953 1.20857 0.93626 0.98016 0.97472 0.93987 0.89686 0.94153 0.92493 0.92240 0.86378 0.86080 0.86186 0.88565 0.88609 0.93222 0.91405 0.92560 0.93890 0.95050 0.92797 0.86180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.80 10.69 -35.23 -0.38 -5.18 16 3 C 0.10 1.26 6.06 36.00 0.22 1.48 16 4 C -0.09 -1.34 5.51 -104.62 -0.58 -1.92 16 5 C -0.10 -1.38 9.70 -39.58 -0.38 -1.76 16 6 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 7 C -0.10 -1.42 9.70 -39.59 -0.38 -1.81 16 8 C -0.06 -0.88 4.37 -104.62 -0.46 -1.34 16 9 C -0.10 -1.58 4.38 -29.03 -0.13 -1.71 16 10 C 0.51 10.62 7.67 -10.99 -0.08 10.53 16 11 O -0.53 -13.72 15.61 5.55 0.09 -13.64 16 12 N -0.61 -12.94 2.86 -182.95 -0.52 -13.46 16 13 C 0.08 1.33 10.29 59.85 0.62 1.95 16 14 C 0.25 6.51 5.21 -5.19 -0.03 6.48 16 15 C -0.52 -15.09 9.39 -34.44 -0.32 -15.42 16 16 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 19 Si 0.90 22.10 29.54 -169.99 -5.02 17.07 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C -0.08 -1.27 9.36 -39.58 -0.37 -1.64 16 24 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.60 8.09 -51.92 -0.42 0.18 16 28 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 29 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 30 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 33 H 0.10 1.17 7.34 -51.93 -0.38 0.79 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 36 H 0.06 0.67 6.44 -51.93 -0.33 0.33 16 37 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 38 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.12 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -35.09 343.57 -7.31 -42.39 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -6.11 Total: -2.04 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -1.28 Total: -4.15 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.21 Total: -39.64 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.29 Total: -18.81 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.09 -7.31 -42.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275085504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.683 kcal (2) G-P(sol) polarization free energy of solvation -35.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds