Wall clock time and date at job start Mon Mar 30 2020 01:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 120.00137 * 2 1 4 4 C 1.53001 * 109.47311 * 89.99816 * 3 2 1 5 5 C 1.52995 * 109.47162 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.46972 * 180.02562 * 5 4 3 7 7 C 1.42893 * 113.99793 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.47070 * 179.97438 * 7 6 5 9 9 C 1.38238 * 119.99792 * 89.99993 * 8 7 6 10 10 C 1.38235 * 119.99712 * 179.97438 * 9 8 7 11 11 C 1.38234 * 120.00220 * 359.97124 * 10 9 8 12 12 C 1.38233 * 120.00037 * 0.28719 * 11 10 9 13 13 C 1.38234 * 120.00179 * 269.97930 * 8 7 6 14 14 C 1.34774 * 119.99650 * 180.02562 * 2 1 3 15 15 O 1.21697 * 119.99793 * 179.97438 * 14 2 1 16 16 C 1.46372 * 120.00548 * 0.02562 * 14 2 1 17 17 H 1.08004 * 119.99733 * 0.02562 * 16 14 2 18 18 C 1.40049 * 120.00256 * 180.02562 * 16 14 2 19 19 N 1.30666 * 120.00062 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99747 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47059 * 59.99924 * 20 18 16 22 22 H 1.48503 * 109.46638 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47323 * 299.99570 * 20 18 16 24 24 H 1.08999 * 109.46874 * 89.99744 * 1 2 3 25 25 H 1.08998 * 109.46879 * 210.00104 * 1 2 3 26 26 H 1.08997 * 109.46974 * 330.00452 * 1 2 3 27 27 H 1.09005 * 109.47101 * 329.99939 * 3 2 1 28 28 H 1.08993 * 109.47064 * 210.00134 * 3 2 1 29 29 H 1.09001 * 109.46447 * 60.00062 * 4 3 2 30 30 H 1.09005 * 109.47034 * 300.00372 * 4 3 2 31 31 H 1.09005 * 109.47112 * 60.00208 * 5 4 3 32 32 H 1.08993 * 109.47202 * 300.00311 * 5 4 3 33 33 H 1.09005 * 109.47744 * 60.00256 * 7 6 5 34 34 H 1.09000 * 109.47353 * 299.99456 * 7 6 5 35 35 H 1.08005 * 120.00068 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.99770 * 179.97438 * 10 9 8 37 37 H 1.08002 * 119.99744 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.00395 * 179.72811 * 12 11 10 39 39 H 1.07999 * 119.99968 * 359.97438 * 13 8 7 40 40 H 0.96997 * 120.00159 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 1.4425 5 6 3.2181 3.0350 1.4425 6 8 3.4568 3.4473 2.7898 7 6 4.1691 4.6809 2.9025 8 6 4.3634 5.0175 4.3586 9 6 5.4893 4.5732 5.0264 10 6 5.6677 4.8823 6.3619 11 6 4.7207 5.6363 7.0294 12 6 3.5923 6.0761 6.3630 13 6 3.4160 5.7708 5.0263 14 6 2.1389 -1.1672 -0.0005 15 8 3.3558 -1.1672 -0.0010 16 6 1.4070 -2.4349 -0.0017 17 1 0.3270 -2.4348 -0.0025 18 6 2.1073 -3.6477 -0.0017 19 7 3.4139 -3.6478 -0.0011 20 14 1.1732 -5.2655 -0.0024 21 1 0.3199 -5.3438 -1.2152 22 1 2.1382 -6.3942 -0.0029 23 1 0.3190 -5.3444 1.2097 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6085 2.0284 -0.5139 28 1 3.1499 1.1383 -0.5138 29 1 3.0416 0.9507 1.9563 30 1 1.5001 1.8407 1.9563 31 1 2.6294 3.7949 0.9285 32 1 4.1705 2.9043 0.9288 33 1 3.5996 5.4749 2.4194 34 1 5.1411 4.5848 2.4187 35 1 6.2295 3.9845 4.5048 36 1 6.5471 4.5349 6.8837 37 1 4.8604 5.8781 8.0727 38 1 2.8502 6.6614 6.8856 39 1 2.5368 6.1186 4.5044 40 1 3.8989 -4.4878 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281586199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:24 Heat of formation + Delta-G solvation = -62.248213 kcal Electronic energy + Delta-G solvation = -20331.319851 eV Core-core repulsion = 17111.002224 eV Total energy + Delta-G solvation = -3220.317627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.49438 -38.00840 -37.37607 -34.31124 -32.51629 -32.41123 -31.13872 -31.05740 -27.06989 -26.03610 -25.58118 -23.87478 -22.73792 -21.61004 -21.15231 -19.04760 -17.05072 -16.59793 -16.34948 -16.09258 -15.58336 -15.52773 -14.93426 -14.58348 -14.15917 -13.90945 -13.63684 -13.58855 -13.21711 -12.88108 -12.50727 -12.21036 -11.72722 -11.62041 -11.42219 -11.38506 -11.22561 -11.16044 -11.03604 -10.88351 -10.76137 -10.37056 -10.18095 -10.06036 -9.50153 -9.07233 -8.99089 -8.82900 -7.57386 -7.20275 -6.17235 -4.62688 1.11417 1.24979 3.16788 3.21608 3.23355 3.44234 3.99881 4.13188 4.57841 4.62334 4.66234 4.78231 4.86331 4.96799 5.11401 5.24812 5.31602 5.36305 5.49791 5.52551 5.71435 5.73748 5.80814 5.84414 5.88397 5.98049 6.07529 6.21214 6.28096 6.33444 6.45497 6.45724 6.56656 6.65243 6.82034 6.84512 7.31099 7.46344 7.65494 8.16003 8.37282 9.04008 9.44507 10.59843 10.78616 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.002853 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.572982 B = 9810.537703 C =10226.848788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.649 5.649 3 C 0.133 3.867 4 C -0.131 4.131 5 C 0.067 3.933 6 O -0.381 6.381 7 C 0.101 3.899 8 C -0.087 4.087 9 C -0.098 4.098 10 C -0.124 4.124 11 C -0.118 4.118 12 C -0.125 4.125 13 C -0.100 4.100 14 C 0.556 3.444 15 O -0.577 6.577 16 C -0.544 4.544 17 H 0.072 0.928 18 C 0.087 3.913 19 N -0.768 5.768 20 Si 0.907 3.093 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.268 1.268 24 H 0.031 0.969 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.421 17.959 8.407 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.387 5.387 3 C 0.008 3.992 4 C -0.170 4.170 5 C -0.010 4.010 6 O -0.300 6.300 7 C 0.024 3.976 8 C -0.087 4.087 9 C -0.116 4.116 10 C -0.142 4.142 11 C -0.136 4.136 12 C -0.143 4.143 13 C -0.118 4.118 14 C 0.362 3.638 15 O -0.459 6.459 16 C -0.580 4.580 17 H 0.090 0.910 18 C -0.133 4.133 19 N -0.396 5.396 20 Si 0.731 3.269 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.193 1.193 24 H 0.049 0.951 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.365 17.727 8.543 19.681 hybrid contribution -0.521 -0.615 -0.151 0.820 sum -0.157 17.112 8.392 19.059 Atomic orbital electron populations 1.21385 0.82203 1.01082 0.99523 1.47969 1.05167 1.05319 1.80242 1.20819 0.97811 0.86638 0.93948 1.21957 1.00183 0.95085 0.99750 1.22521 0.99161 0.96586 0.82718 1.87994 1.76327 1.38395 1.27323 1.21277 0.96429 0.87312 0.92546 1.19681 0.95219 0.98446 0.95346 1.21132 0.97488 0.98337 0.94660 1.21163 0.99549 0.98865 0.94621 1.21185 0.94463 0.98144 0.99820 1.21137 0.97918 1.00678 0.94608 1.21076 0.98172 0.97923 0.94623 1.18260 0.87003 0.82283 0.76302 1.90594 1.13997 1.86297 1.55023 1.20979 0.93678 0.89285 1.54101 0.91019 1.25741 0.94613 1.00306 0.92615 1.70010 1.07070 1.27360 1.35196 0.86452 0.79856 0.81113 0.79452 1.19268 1.20565 1.19251 0.95079 0.91021 0.94107 0.92980 0.90874 0.90549 0.91937 0.93687 0.93140 0.92675 0.92502 0.85778 0.85912 0.86114 0.85998 0.85965 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.93 10.15 59.85 0.61 2.53 16 2 N -0.65 -15.05 2.87 -183.25 -0.53 -15.57 16 3 C 0.13 2.60 5.41 -4.04 -0.02 2.57 16 4 C -0.13 -2.39 5.91 -26.73 -0.16 -2.55 16 5 C 0.07 1.00 5.94 37.16 0.22 1.22 16 6 O -0.38 -5.97 10.33 -35.23 -0.36 -6.34 16 7 C 0.10 1.22 6.06 36.01 0.22 1.44 16 8 C -0.09 -1.04 5.51 -104.62 -0.58 -1.62 16 9 C -0.10 -1.12 9.70 -39.58 -0.38 -1.51 16 10 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 11 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 12 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 13 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 14 C 0.56 16.05 7.61 -12.99 -0.10 15.95 16 15 O -0.58 -18.78 14.60 5.19 0.08 -18.70 16 16 C -0.54 -15.45 8.74 -35.63 -0.31 -15.76 16 17 H 0.07 1.85 6.00 -52.48 -0.31 1.54 16 18 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 19 N -0.77 -23.22 11.83 55.55 0.66 -22.56 16 20 Si 0.91 20.25 29.56 -169.99 -5.02 15.23 16 21 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 1.39 6.10 -51.93 -0.32 1.08 16 26 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 27 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.07 1.57 7.42 -51.93 -0.39 1.19 16 29 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 35 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.27 7.38 8.29 -40.82 -0.34 7.05 16 LS Contribution 341.99 15.07 5.15 5.15 Total: -1.00 -35.26 341.99 -8.26 -43.52 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.06 Total: 0.84 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.18 Total: -1.57 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.13 Total: -38.13 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.29 Total: -25.04 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.26 -8.26 -43.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281586199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.727 kcal (2) G-P(sol) polarization free energy of solvation -35.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds