Wall clock time and date at job start Mon Mar 30 2020 01:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 120.00137 * 2 1 4 4 C 1.53001 * 109.47311 * 89.99816 * 3 2 1 5 5 C 1.52995 * 109.47162 * 179.97438 * 4 3 2 6 6 O 1.42903 * 109.46972 * 180.02562 * 5 4 3 7 7 C 1.42893 * 113.99793 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.47070 * 179.97438 * 7 6 5 9 9 C 1.38238 * 119.99792 * 89.99993 * 8 7 6 10 10 C 1.38235 * 119.99712 * 179.97438 * 9 8 7 11 11 C 1.38234 * 120.00220 * 359.97124 * 10 9 8 12 12 C 1.38233 * 120.00037 * 0.28719 * 11 10 9 13 13 C 1.38234 * 120.00179 * 269.97930 * 8 7 6 14 14 C 1.34774 * 119.99650 * 180.02562 * 2 1 3 15 15 O 1.21697 * 119.99793 * 179.97438 * 14 2 1 16 16 C 1.46372 * 120.00548 * 0.02562 * 14 2 1 17 17 H 1.08004 * 119.99733 * 0.02562 * 16 14 2 18 18 C 1.40049 * 120.00256 * 180.02562 * 16 14 2 19 19 N 1.30666 * 120.00062 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99747 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47059 * 59.99924 * 20 18 16 22 22 H 1.48503 * 109.46638 * 179.97438 * 20 18 16 23 23 H 1.48491 * 109.47323 * 299.99570 * 20 18 16 24 24 H 1.08999 * 109.46874 * 89.99744 * 1 2 3 25 25 H 1.08998 * 109.46879 * 210.00104 * 1 2 3 26 26 H 1.08997 * 109.46974 * 330.00452 * 1 2 3 27 27 H 1.09005 * 109.47101 * 329.99939 * 3 2 1 28 28 H 1.08993 * 109.47064 * 210.00134 * 3 2 1 29 29 H 1.09001 * 109.46447 * 60.00062 * 4 3 2 30 30 H 1.09005 * 109.47034 * 300.00372 * 4 3 2 31 31 H 1.09005 * 109.47112 * 60.00208 * 5 4 3 32 32 H 1.08993 * 109.47202 * 300.00311 * 5 4 3 33 33 H 1.09005 * 109.47744 * 60.00256 * 7 6 5 34 34 H 1.09000 * 109.47353 * 299.99456 * 7 6 5 35 35 H 1.08005 * 120.00068 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.99770 * 179.97438 * 10 9 8 37 37 H 1.08002 * 119.99744 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.00395 * 179.72811 * 12 11 10 39 39 H 1.07999 * 119.99968 * 359.97438 * 13 8 7 40 40 H 0.96997 * 120.00159 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 1.4425 5 6 3.2181 3.0350 1.4425 6 8 3.4568 3.4473 2.7898 7 6 4.1691 4.6809 2.9025 8 6 4.3634 5.0175 4.3586 9 6 5.4893 4.5732 5.0264 10 6 5.6677 4.8823 6.3619 11 6 4.7207 5.6363 7.0294 12 6 3.5923 6.0761 6.3630 13 6 3.4160 5.7708 5.0263 14 6 2.1389 -1.1672 -0.0005 15 8 3.3558 -1.1672 -0.0010 16 6 1.4070 -2.4349 -0.0017 17 1 0.3270 -2.4348 -0.0025 18 6 2.1073 -3.6477 -0.0017 19 7 3.4139 -3.6478 -0.0011 20 14 1.1732 -5.2655 -0.0024 21 1 0.3199 -5.3438 -1.2152 22 1 2.1382 -6.3942 -0.0029 23 1 0.3190 -5.3444 1.2097 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6085 2.0284 -0.5139 28 1 3.1499 1.1383 -0.5138 29 1 3.0416 0.9507 1.9563 30 1 1.5001 1.8407 1.9563 31 1 2.6294 3.7949 0.9285 32 1 4.1705 2.9043 0.9288 33 1 3.5996 5.4749 2.4194 34 1 5.1411 4.5848 2.4187 35 1 6.2295 3.9845 4.5048 36 1 6.5471 4.5349 6.8837 37 1 4.8604 5.8781 8.0727 38 1 2.8502 6.6614 6.8856 39 1 2.5368 6.1186 4.5044 40 1 3.8989 -4.4878 -0.0015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281586199.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:23 Heat of formation + Delta-G solvation = -84.805027 kcal Electronic energy + Delta-G solvation = -20332.297988 eV Core-core repulsion = 17111.002224 eV Total energy + Delta-G solvation = -3221.295764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.32957 -39.77880 -38.67147 -36.19778 -34.59260 -33.73255 -32.34116 -31.81799 -28.80207 -27.63219 -26.83833 -25.47397 -23.50560 -22.91440 -22.19817 -20.96133 -18.47240 -17.87011 -17.74493 -17.49964 -17.15786 -16.50292 -16.16383 -16.06922 -15.72945 -15.49641 -14.89739 -14.63955 -14.29418 -14.14787 -13.71410 -13.43124 -13.37662 -13.08332 -13.06253 -13.03297 -12.89533 -12.67828 -12.21554 -12.18007 -12.04103 -11.95125 -11.84821 -11.69670 -10.91348 -10.61591 -9.85131 -9.81478 -9.77364 -9.09451 -8.28132 -6.83931 0.31094 0.47095 1.39501 1.43267 1.54699 2.23868 2.42967 2.53702 2.89296 3.18442 3.62971 3.85804 3.88457 3.94789 4.12440 4.20189 4.27622 4.31211 4.36658 4.41195 4.46666 4.55652 4.61744 4.62566 4.69346 4.74402 4.92803 5.04621 5.04960 5.10670 5.13078 5.27733 5.37592 5.52154 5.57862 5.64754 5.77582 6.07121 6.14990 6.21583 6.43548 6.88023 7.42030 8.48096 8.68256 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.002853 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.572982 B = 9810.537703 C =10226.848788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.654 5.654 3 C 0.132 3.868 4 C -0.119 4.119 5 C 0.075 3.925 6 O -0.407 6.407 7 C 0.098 3.902 8 C -0.111 4.111 9 C -0.120 4.120 10 C -0.133 4.133 11 C -0.121 4.121 12 C -0.129 4.129 13 C -0.111 4.111 14 C 0.536 3.464 15 O -0.631 6.631 16 C -0.571 4.571 17 H 0.094 0.906 18 C 0.026 3.974 19 N -0.824 5.824 20 Si 0.996 3.004 21 H -0.252 1.252 22 H -0.276 1.276 23 H -0.254 1.254 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.044 0.956 29 H 0.024 0.976 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.135 0.865 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.813 19.028 8.991 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.390 5.390 3 C 0.008 3.992 4 C -0.158 4.158 5 C -0.002 4.002 6 O -0.328 6.328 7 C 0.022 3.978 8 C -0.111 4.111 9 C -0.138 4.138 10 C -0.151 4.151 11 C -0.138 4.138 12 C -0.147 4.147 13 C -0.129 4.129 14 C 0.342 3.658 15 O -0.518 6.518 16 C -0.607 4.607 17 H 0.112 0.888 18 C -0.188 4.188 19 N -0.453 5.453 20 Si 0.815 3.185 21 H -0.176 1.176 22 H -0.201 1.201 23 H -0.178 1.178 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.153 0.847 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.076 18.855 9.127 21.051 hybrid contribution 0.222 -0.816 -0.280 0.891 sum -1.854 18.039 8.847 20.177 Atomic orbital electron populations 1.21590 0.79279 1.02530 1.01023 1.47878 1.07179 1.05072 1.78889 1.20988 0.97067 0.86241 0.94913 1.21756 1.00213 0.95538 0.98280 1.22389 0.99120 0.95626 0.83067 1.87942 1.77014 1.40339 1.27476 1.21457 0.96655 0.86399 0.93247 1.19843 0.96044 0.99627 0.95559 1.21315 0.97800 0.99070 0.95661 1.21457 1.00534 0.98876 0.94211 1.21568 0.93957 0.97213 1.01096 1.21506 0.98504 1.00405 0.94299 1.21329 0.98339 0.97847 0.95407 1.18691 0.86685 0.84390 0.76073 1.90542 1.16265 1.87627 1.57367 1.21534 0.94942 0.89896 1.54306 0.88833 1.27036 0.95509 1.05079 0.91224 1.70196 1.09616 1.28913 1.36606 0.85094 0.78237 0.74739 0.80380 1.17581 1.20052 1.17801 0.93396 0.92016 0.90255 0.88217 0.93771 0.95743 0.90972 0.90071 0.93522 0.90459 0.92110 0.86079 0.84184 0.83483 0.83478 0.84714 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.50 10.15 127.77 1.30 4.79 16 2 N -0.65 -30.33 2.87 -851.89 -2.45 -32.78 16 3 C 0.13 5.12 5.41 86.38 0.47 5.59 16 4 C -0.12 -4.38 5.91 30.59 0.18 -4.20 16 5 C 0.07 2.18 5.94 71.98 0.43 2.61 16 6 O -0.41 -12.70 10.33 -148.98 -1.54 -14.24 16 7 C 0.10 2.32 6.06 71.24 0.43 2.75 16 8 C -0.11 -2.63 5.51 -19.86 -0.11 -2.74 16 9 C -0.12 -2.79 9.70 22.27 0.22 -2.57 16 10 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 11 C -0.12 -2.03 10.05 22.27 0.22 -1.80 16 12 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 13 C -0.11 -2.26 9.70 22.27 0.22 -2.05 16 14 C 0.54 31.96 7.61 86.36 0.66 32.62 16 15 O -0.63 -43.40 14.60 -4.34 -0.06 -43.47 16 16 C -0.57 -32.84 8.74 24.83 0.22 -32.62 16 17 H 0.09 4.78 6.00 -2.91 -0.02 4.76 16 18 C 0.03 1.50 5.50 85.31 0.47 1.97 16 19 N -0.82 -51.65 11.83 21.84 0.26 -51.39 16 20 Si 1.00 41.53 29.56 68.60 2.03 43.56 16 21 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 22 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 24 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 2.30 6.10 -2.39 -0.01 2.29 16 26 H 0.08 2.20 8.07 -2.39 -0.02 2.18 16 27 H 0.10 2.92 8.07 -2.38 -0.02 2.90 16 28 H 0.04 1.97 7.42 -2.39 -0.02 1.95 16 29 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 31 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 1.44 8.08 -2.38 -0.02 1.42 16 34 H 0.06 1.34 8.09 -2.39 -0.02 1.32 16 35 H 0.12 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.27 15.57 8.29 -92.71 -0.77 14.80 16 Total: -1.00 -81.33 341.99 4.39 -76.94 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 1.01 Total: 21.38 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 5.14 Total: 0.00 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.19 Total: -84.17 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -1.60 Total: -57.71 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -81.33 4.39 -76.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281586199.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.861 kcal (2) G-P(sol) polarization free energy of solvation -81.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds