Wall clock time and date at job start Mon Mar 30 2020 02:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35991 * 116.99866 * 2 1 4 4 C 1.38570 * 120.07541 * 359.97438 * 3 2 1 5 5 C 1.38243 * 120.00062 * 180.02562 * 4 3 2 6 6 C 1.50690 * 119.92637 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.46951 * 270.01914 * 6 5 4 8 8 C 1.46903 * 110.99800 * 189.99698 * 7 6 5 9 9 C 1.50699 * 109.46910 * 162.84771 * 8 7 6 10 10 H 1.08004 * 119.99968 * 4.70966 * 9 8 7 11 11 C 1.37873 * 120.00222 * 184.70237 * 9 8 7 12 12 N 1.31520 * 120.00377 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99832 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47348 * 89.99477 * 13 11 9 15 15 H 1.48500 * 109.46801 * 209.99568 * 13 11 9 16 16 H 1.48492 * 109.47155 * 329.99371 * 13 11 9 17 17 C 1.46898 * 110.99862 * 66.04946 * 7 6 5 18 18 C 1.52997 * 117.49977 * 127.42944 * 17 7 6 19 19 C 1.52995 * 60.00109 * 252.50726 * 18 17 7 20 20 C 1.38256 * 120.14499 * 0.02562 * 5 4 3 21 21 C 1.38246 * 120.14658 * 0.02562 * 20 5 4 22 22 C 1.38563 * 120.00110 * 0.22707 * 21 20 5 23 23 O 1.35991 * 120.07392 * 179.75448 * 22 21 20 24 24 H 1.08998 * 109.47502 * 300.00535 * 1 2 3 25 25 H 1.09008 * 109.47114 * 60.00164 * 1 2 3 26 26 H 1.08996 * 109.47164 * 180.02562 * 1 2 3 27 27 H 1.07997 * 120.00015 * 0.02575 * 4 3 2 28 28 H 1.08995 * 109.47456 * 30.02022 * 6 5 4 29 29 H 1.09001 * 109.47329 * 150.02411 * 6 5 4 30 30 H 1.08996 * 109.47545 * 282.85322 * 8 7 6 31 31 H 1.08997 * 109.46967 * 42.85554 * 8 7 6 32 32 H 0.96996 * 119.99927 * 180.02562 * 12 11 9 33 33 H 1.08997 * 115.54687 * 273.13927 * 17 7 6 34 34 H 1.08994 * 117.50038 * 0.02562 * 18 17 7 35 35 H 1.09005 * 117.49520 * 145.01778 * 18 17 7 36 36 H 1.08992 * 117.50363 * 252.50710 * 19 18 17 37 37 H 1.09007 * 117.51653 * 107.48380 * 19 18 17 38 38 H 1.08001 * 119.92242 * 179.97438 * 20 5 4 39 39 H 1.08004 * 119.99426 * 179.97438 * 21 20 5 40 40 H 0.96693 * 114.00303 * 89.99510 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 -0.0005 5 6 1.9223 3.6058 -0.0011 6 6 1.1016 4.8696 -0.0011 7 7 0.8340 5.2796 -1.3861 8 6 0.2446 6.6244 -1.4324 9 6 0.3706 7.1803 -2.8274 10 1 0.7721 6.5655 -3.6195 11 6 -0.0266 8.4737 -3.0927 12 7 0.0830 8.9587 -4.3103 13 14 -0.7204 9.5372 -1.7226 14 1 0.3851 10.2760 -1.0614 15 1 -1.6921 10.5053 -2.2915 16 1 -1.4056 8.6757 -0.7260 17 6 -0.0272 4.3036 -2.0670 18 6 -1.2892 4.8319 -2.7521 19 6 -1.4023 4.0272 -1.4557 20 6 3.3029 3.6799 -0.0016 21 6 4.0603 2.5233 -0.0021 22 6 3.4359 1.2863 -0.0069 23 8 4.1795 0.1477 -0.0125 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 0.2146 2.3197 -0.0005 28 1 0.1577 4.6898 0.5134 29 1 1.6505 5.6593 0.5120 30 1 -0.8086 6.5692 -1.1571 31 1 0.7693 7.2754 -0.7332 32 1 -0.1961 9.8687 -4.4967 33 1 0.4905 3.4689 -2.5395 34 1 -1.4801 5.9036 -2.6979 35 1 -1.6018 4.3447 -3.6757 36 1 -1.7894 3.0108 -1.5264 37 1 -1.6678 4.5693 -0.5481 38 1 3.7907 4.6434 -0.0024 39 1 5.1386 2.5840 -0.0030 40 1 4.3954 -0.1854 0.8692 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282507845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:45 Heat of formation + Delta-G solvation = -10.025282 kcal Electronic energy + Delta-G solvation = -21826.764301 eV Core-core repulsion = 18608.711231 eV Total energy + Delta-G solvation = -3218.053070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.41045 -38.60892 -37.75012 -36.48163 -33.20497 -32.53047 -30.50618 -29.97474 -27.94855 -27.07732 -24.59228 -22.55506 -22.31765 -21.72791 -21.13156 -18.97572 -18.49498 -17.28663 -16.70831 -16.41339 -16.04696 -15.89824 -15.20689 -14.84906 -14.30468 -14.07388 -13.99332 -13.80282 -13.57721 -12.59736 -12.58107 -12.20737 -12.11125 -12.01629 -11.68685 -11.47975 -11.23214 -10.94967 -10.79333 -10.59548 -10.46032 -10.36157 -9.96778 -9.92394 -9.43161 -9.31146 -8.69028 -8.58891 -8.00860 -7.40393 -6.07080 -4.02940 1.28248 1.48631 3.20879 3.24371 3.32391 3.33206 3.67947 4.22951 4.38101 4.44812 4.73427 4.87109 4.95546 5.05769 5.09776 5.23170 5.25033 5.38807 5.47185 5.52832 5.56809 5.62522 5.66784 5.79010 5.88163 6.01944 6.07477 6.24999 6.38938 6.49892 6.56496 6.68484 6.75831 6.80407 6.82751 7.15354 7.20591 7.55319 7.75499 7.82928 7.96154 8.62822 9.06234 9.53565 11.05938 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025753 B = 0.004665 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.010712 B = 6000.977260 C = 6528.857062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.097 3.903 4 C -0.183 4.183 5 C -0.028 4.028 6 C 0.087 3.913 7 N -0.488 5.488 8 C 0.156 3.844 9 C -0.498 4.498 10 H 0.083 0.917 11 C 0.069 3.931 12 N -0.897 5.897 13 Si 0.870 3.130 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.269 1.269 17 C 0.041 3.959 18 C -0.165 4.165 19 C -0.237 4.237 20 C -0.120 4.120 21 C -0.108 4.108 22 C 0.062 3.938 23 O -0.488 6.488 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.097 0.903 27 H 0.131 0.869 28 H 0.037 0.963 29 H 0.081 0.919 30 H -0.005 1.005 31 H 0.023 0.977 32 H 0.263 0.737 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.547 -14.970 12.175 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.051 3.949 4 C -0.203 4.203 5 C -0.029 4.029 6 C -0.040 4.040 7 N -0.211 5.211 8 C 0.031 3.969 9 C -0.537 4.537 10 H 0.101 0.899 11 C -0.133 4.133 12 N -0.536 5.536 13 Si 0.697 3.303 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.194 1.194 17 C -0.068 4.068 18 C -0.202 4.202 19 C -0.276 4.276 20 C -0.139 4.139 21 C -0.127 4.127 22 C 0.017 3.983 23 O -0.297 6.297 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.149 0.851 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.012 0.988 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.011 -14.890 11.196 18.737 hybrid contribution -1.403 0.716 1.505 2.179 sum 0.609 -14.173 12.701 19.041 Atomic orbital electron populations 1.23053 0.78704 1.03620 1.01539 1.86103 1.21035 1.26480 1.88929 1.19399 0.91656 0.84711 0.99086 1.21103 1.00114 0.91300 1.07742 1.19702 0.93858 0.94070 0.95265 1.21114 0.97275 0.93829 0.91787 1.62067 1.45042 1.02496 1.11448 1.20334 0.92671 0.84961 0.98970 1.20964 1.41318 0.97978 0.93393 0.89900 1.24876 0.95722 0.97496 0.95187 1.69886 1.48128 1.16190 1.19441 0.86957 0.79461 0.80988 0.82907 1.20152 1.21197 1.19424 1.22504 0.85306 0.97565 1.01459 1.23500 0.99889 1.02744 0.94035 1.23382 1.04765 1.00731 0.98708 1.20896 0.93082 0.98237 1.01637 1.21205 1.00343 0.90841 1.00297 1.17711 0.86064 0.86448 1.08100 1.84908 1.71897 1.39974 1.32883 0.92823 0.92471 0.88449 0.85124 0.94505 0.90111 0.98777 0.95878 0.92657 0.87601 0.85118 0.89755 0.90091 0.89827 0.85129 0.84947 0.76603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.13 10.28 -34.21 -0.35 -4.49 16 3 C 0.10 1.37 6.70 -39.12 -0.26 1.11 16 4 C -0.18 -2.58 7.82 -39.46 -0.31 -2.89 16 5 C -0.03 -0.42 5.03 -104.62 -0.53 -0.95 16 6 C 0.09 1.44 5.00 -4.98 -0.02 1.42 16 7 N -0.49 -9.86 4.66 -229.53 -1.07 -10.93 16 8 C 0.16 3.61 3.34 -4.97 -0.02 3.59 16 9 C -0.50 -13.56 7.41 -34.44 -0.26 -13.81 16 10 H 0.08 2.52 8.05 -52.48 -0.42 2.10 16 11 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 12 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 13 Si 0.87 20.79 27.38 -169.99 -4.65 16.14 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.18 6.68 56.52 0.38 -5.80 16 17 C 0.04 0.77 4.77 -67.72 -0.32 0.45 16 18 C -0.16 -3.17 8.87 -26.74 -0.24 -3.41 16 19 C -0.24 -3.82 8.68 -26.73 -0.23 -4.05 16 20 C -0.12 -1.69 9.69 -39.57 -0.38 -2.08 16 21 C -0.11 -1.41 9.98 -39.46 -0.39 -1.81 16 22 C 0.06 0.86 6.72 -39.12 -0.26 0.59 16 23 O -0.49 -6.12 13.29 -34.22 -0.45 -6.58 16 24 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 25 H 0.06 0.55 7.66 -51.92 -0.40 0.16 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.13 1.70 5.67 -52.49 -0.30 1.41 16 28 H 0.04 0.58 6.80 -51.93 -0.35 0.23 16 29 H 0.08 1.28 7.79 -51.93 -0.40 0.87 16 30 H -0.01 -0.12 5.41 -51.93 -0.28 -0.40 16 31 H 0.02 0.54 6.95 -51.93 -0.36 0.17 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 33 H 0.11 1.97 8.12 -51.93 -0.42 1.55 16 34 H 0.13 2.95 4.91 -51.93 -0.25 2.69 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.37 7.14 -51.93 -0.37 1.00 16 38 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 40 H 0.38 2.88 9.06 45.56 0.41 3.29 16 LS Contribution 323.83 15.07 4.88 4.88 Total: -1.00 -31.59 323.83 -8.03 -39.62 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.82 Total: 6.21 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -2.33 Total: -18.77 kcal Atomic # 7 Polarization: -36.72 SS G_CDS: -0.30 Total: -37.01 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: -0.81 Total: -11.06 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.65 Total: 16.14 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.59 -8.03 -39.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282507845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.596 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds