Wall clock time and date at job start Mon Mar 30 2020 02:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35990 * 116.99336 * 2 1 4 4 C 1.38563 * 120.07875 * 0.02562 * 3 2 1 5 5 C 1.38247 * 120.00421 * 179.97438 * 4 3 2 6 6 C 1.38251 * 120.14007 * 0.02562 * 5 4 3 7 7 C 1.38240 * 120.15493 * 359.97438 * 6 5 4 8 8 C 1.38572 * 119.99153 * 359.73318 * 7 6 5 9 9 O 1.35997 * 120.07027 * 180.27475 * 8 7 6 10 10 C 1.42903 * 117.00337 * 5.64771 * 9 8 7 11 11 H 1.09006 * 109.49183 * 28.93264 * 10 9 8 12 12 C 1.53033 * 109.49869 * 148.99191 * 10 9 8 13 13 C 1.53041 * 109.53882 * 181.31902 * 12 10 9 14 14 C 1.53186 * 109.31192 * 298.63697 * 13 12 10 15 15 N 1.46930 * 108.77671 * 54.63515 * 14 13 12 16 16 C 1.36936 * 120.62767 * 126.38808 * 15 14 13 17 17 H 1.07998 * 120.00318 * 329.65450 * 16 15 14 18 18 C 1.38818 * 119.99416 * 149.66112 * 16 15 14 19 19 N 1.31615 * 120.00204 * 343.97670 * 18 16 15 20 20 Si 1.86805 * 119.99673 * 163.97819 * 18 16 15 21 21 H 1.48493 * 109.47235 * 90.00067 * 20 18 16 22 22 H 1.48500 * 109.47005 * 210.00195 * 20 18 16 23 23 H 1.48503 * 109.46953 * 329.99779 * 20 18 16 24 24 C 1.46929 * 118.76324 * 306.41185 * 15 14 13 25 25 H 1.09000 * 109.46763 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47511 * 59.99803 * 1 2 3 27 27 H 1.08995 * 109.46944 * 299.99196 * 1 2 3 28 28 H 1.07999 * 119.99849 * 359.97438 * 4 3 2 29 29 H 1.07990 * 119.92872 * 179.97438 * 5 4 3 30 30 H 1.08009 * 119.92407 * 180.02562 * 6 5 4 31 31 H 1.07994 * 120.00906 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.46112 * 301.34387 * 12 10 9 33 33 H 1.09001 * 109.45993 * 61.31383 * 12 10 9 34 34 H 1.09001 * 109.49775 * 58.59328 * 13 12 10 35 35 H 1.09001 * 109.49695 * 178.64867 * 13 12 10 36 36 H 1.09005 * 109.58829 * 174.41882 * 14 13 12 37 37 H 1.08997 * 109.59095 * 294.84579 * 14 13 12 38 38 H 0.97005 * 119.99655 * 180.02562 * 19 18 16 39 39 H 1.09003 * 109.55931 * 293.78373 * 24 15 14 40 40 H 1.08999 * 109.61811 * 173.35841 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9222 3.6058 0.0011 6 6 3.3027 3.6799 0.0005 7 6 4.0602 2.5235 0.0000 8 6 3.4359 1.2865 0.0056 9 8 4.1795 0.1478 0.0107 10 6 5.5952 0.2980 0.1353 11 1 5.8166 1.2050 0.6980 12 6 6.1746 -0.9130 0.8699 13 6 7.6862 -0.7377 1.0329 14 6 8.3385 -0.6537 -0.3506 15 7 7.6861 0.4167 -1.1169 16 6 8.4268 1.4167 -1.6884 17 1 9.3517 1.7333 -1.2295 18 6 7.9886 2.0234 -2.8575 19 7 7.0542 1.4505 -3.5861 20 14 8.7253 3.6532 -3.3967 21 1 9.9044 3.4009 -4.2634 22 1 7.7106 4.4285 -4.1547 23 1 9.1465 4.4259 -2.2005 24 6 6.2238 0.3947 -1.2583 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5137 0.8900 28 1 0.2145 2.3196 0.0005 29 1 1.3340 4.5115 0.0011 30 1 3.7906 4.6436 0.0014 31 1 5.1385 2.5842 0.0000 32 1 5.7107 -0.9978 1.8526 33 1 5.9740 -1.8168 0.2945 34 1 7.8885 0.1790 1.5868 35 1 8.0946 -1.5892 1.5772 36 1 9.3998 -0.4300 -0.2412 37 1 8.2149 -1.6033 -0.8712 38 1 6.7483 1.8744 -4.4033 39 1 5.9277 -0.4692 -1.8534 40 1 5.8895 1.3097 -1.7473 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286397326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:48 Heat of formation + Delta-G solvation = -26.456299 kcal Electronic energy + Delta-G solvation = -22205.565296 eV Core-core repulsion = 18986.799723 eV Total energy + Delta-G solvation = -3218.765573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25354 -38.58219 -36.98716 -36.02380 -32.99824 -30.45253 -30.08371 -29.83857 -28.73181 -27.06581 -25.28847 -23.05596 -22.32883 -21.81108 -21.02780 -19.18219 -18.29537 -17.05152 -16.59326 -16.11371 -15.67213 -15.11387 -14.58501 -14.42956 -14.24449 -14.12845 -13.83716 -13.44334 -12.93643 -12.81238 -12.36814 -12.20240 -12.01608 -11.88482 -11.67648 -11.16228 -11.01137 -10.96524 -10.91095 -10.75291 -10.48872 -10.24240 -10.06036 -9.97961 -9.78577 -9.44011 -8.53261 -8.41147 -7.47157 -6.67790 -5.81714 -3.28674 1.57251 1.74036 3.35102 3.42691 3.44382 3.46231 3.68607 4.02984 4.46977 4.96515 5.11152 5.18528 5.25621 5.28496 5.33244 5.44124 5.48190 5.51551 5.61157 5.64513 5.68600 5.80900 5.91998 6.01539 6.14843 6.29081 6.43145 6.44536 6.50032 6.57389 6.70321 6.77397 6.79959 6.97105 6.98883 7.18567 7.40515 7.60338 7.76959 8.06044 8.42152 9.16231 9.79047 10.37188 11.25938 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.006277 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.327799 B = 4459.942763 C = 5537.765201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.306 6.306 3 C 0.086 3.914 4 C -0.177 4.177 5 C -0.132 4.132 6 C -0.113 4.113 7 C -0.169 4.169 8 C 0.121 3.879 9 O -0.303 6.303 10 C 0.055 3.945 11 H 0.067 0.933 12 C -0.105 4.105 13 C -0.131 4.131 14 C 0.141 3.859 15 N -0.587 5.587 16 C -0.262 4.262 17 H 0.067 0.933 18 C 0.008 3.992 19 N -0.896 5.896 20 Si 0.900 3.100 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.159 3.841 25 H 0.096 0.904 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.128 0.872 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.145 0.855 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.021 0.979 38 H 0.255 0.745 39 H 0.029 0.971 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.588 0.238 9.023 13.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.220 6.220 3 C 0.040 3.960 4 C -0.196 4.196 5 C -0.150 4.150 6 C -0.132 4.132 7 C -0.188 4.188 8 C 0.074 3.926 9 O -0.216 6.216 10 C -0.003 4.003 11 H 0.085 0.915 12 C -0.143 4.143 13 C -0.170 4.170 14 C 0.015 3.985 15 N -0.311 5.311 16 C -0.391 4.391 17 H 0.084 0.916 18 C -0.192 4.192 19 N -0.539 5.539 20 Si 0.729 3.271 21 H -0.212 1.212 22 H -0.214 1.214 23 H -0.203 1.203 24 C 0.032 3.968 25 H 0.114 0.886 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.162 0.838 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.039 0.961 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.626 -0.112 8.838 13.822 hybrid contribution 0.157 1.170 -0.451 1.264 sum -10.470 1.059 8.386 13.456 Atomic orbital electron populations 1.22987 0.79374 1.03505 1.00815 1.86193 1.20324 1.26178 1.89321 1.18270 0.89298 0.84970 1.03418 1.20939 0.99380 0.91717 1.07581 1.20735 0.94543 0.96658 1.03056 1.20871 0.93595 0.97965 1.00734 1.21354 1.01506 0.91057 1.04847 1.18314 0.88112 0.86798 0.99327 1.86130 1.20151 1.27966 1.87318 1.23560 0.76497 0.98665 1.01541 0.91507 1.21464 0.95789 0.97788 0.99209 1.22031 0.94250 1.00876 0.99845 1.21001 0.95892 0.91749 0.89907 1.43929 1.00814 1.25726 1.60632 1.19136 1.05966 1.10674 1.03329 0.91579 1.25141 0.99111 0.99650 0.95281 1.70029 1.31927 1.37624 1.14335 0.86350 0.78431 0.83879 0.78458 1.21222 1.21447 1.20334 1.21150 0.83303 1.02511 0.89803 0.88592 0.93001 0.93142 0.85408 0.86154 0.85875 0.83785 0.92806 0.91573 0.92226 0.92221 0.92463 0.96135 0.93448 0.95279 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -5.06 10.28 -34.21 -0.35 -5.41 16 3 C 0.09 1.48 6.70 -39.12 -0.26 1.22 16 4 C -0.18 -2.53 9.04 -39.46 -0.36 -2.88 16 5 C -0.13 -1.82 10.04 -39.57 -0.40 -2.22 16 6 C -0.11 -1.77 10.04 -39.58 -0.40 -2.16 16 7 C -0.17 -3.10 8.63 -39.46 -0.34 -3.44 16 8 C 0.12 2.35 6.68 -39.12 -0.26 2.09 16 9 O -0.30 -6.36 9.57 -34.24 -0.33 -6.68 16 10 C 0.05 1.13 2.23 -26.62 -0.06 1.07 16 11 H 0.07 1.36 5.93 -51.93 -0.31 1.05 16 12 C -0.10 -1.90 5.54 -26.69 -0.15 -2.05 16 13 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 14 C 0.14 2.95 6.52 -3.71 -0.02 2.92 16 15 N -0.59 -14.75 2.98 -172.32 -0.51 -15.26 16 16 C -0.26 -7.11 9.56 -15.06 -0.14 -7.26 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 18 C 0.01 0.22 4.92 -17.43 -0.09 0.13 16 19 N -0.90 -26.19 11.31 55.49 0.63 -25.57 16 20 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 24 C 0.16 3.91 4.76 -3.71 -0.02 3.89 16 25 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 27 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 28 H 0.13 1.41 6.30 -52.49 -0.33 1.08 16 29 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.14 2.80 5.62 -52.49 -0.29 2.51 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 2.44 5.64 -51.93 -0.29 2.14 16 LS Contribution 321.62 15.07 4.85 4.85 Total: -1.00 -31.15 321.62 -8.20 -39.35 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -5.79 Total: 2.11 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.66 Total: -9.83 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.11 Total: -40.83 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.68 Total: -12.10 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.15 -8.20 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286397326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.891 kcal (2) G-P(sol) polarization free energy of solvation -31.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds