Wall clock time and date at job start Mon Mar 30 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35990 * 116.99336 * 2 1 4 4 C 1.38563 * 120.07875 * 0.02562 * 3 2 1 5 5 C 1.38247 * 120.00421 * 179.97438 * 4 3 2 6 6 C 1.38251 * 120.14007 * 0.02562 * 5 4 3 7 7 C 1.38240 * 120.15493 * 359.97438 * 6 5 4 8 8 C 1.38572 * 119.99153 * 359.73318 * 7 6 5 9 9 O 1.35997 * 120.07027 * 180.27475 * 8 7 6 10 10 C 1.42903 * 117.00337 * 5.64771 * 9 8 7 11 11 H 1.09006 * 109.49183 * 28.93264 * 10 9 8 12 12 C 1.53033 * 109.49869 * 148.99191 * 10 9 8 13 13 C 1.53041 * 109.53882 * 181.31902 * 12 10 9 14 14 C 1.53186 * 109.31192 * 298.63697 * 13 12 10 15 15 N 1.46930 * 108.77671 * 54.63515 * 14 13 12 16 16 C 1.36936 * 120.62767 * 126.38808 * 15 14 13 17 17 H 1.07998 * 120.00318 * 329.65450 * 16 15 14 18 18 C 1.38818 * 119.99416 * 149.66112 * 16 15 14 19 19 N 1.31615 * 120.00204 * 343.97670 * 18 16 15 20 20 Si 1.86805 * 119.99673 * 163.97819 * 18 16 15 21 21 H 1.48493 * 109.47235 * 90.00067 * 20 18 16 22 22 H 1.48500 * 109.47005 * 210.00195 * 20 18 16 23 23 H 1.48503 * 109.46953 * 329.99779 * 20 18 16 24 24 C 1.46929 * 118.76324 * 306.41185 * 15 14 13 25 25 H 1.09000 * 109.46763 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47511 * 59.99803 * 1 2 3 27 27 H 1.08995 * 109.46944 * 299.99196 * 1 2 3 28 28 H 1.07999 * 119.99849 * 359.97438 * 4 3 2 29 29 H 1.07990 * 119.92872 * 179.97438 * 5 4 3 30 30 H 1.08009 * 119.92407 * 180.02562 * 6 5 4 31 31 H 1.07994 * 120.00906 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.46112 * 301.34387 * 12 10 9 33 33 H 1.09001 * 109.45993 * 61.31383 * 12 10 9 34 34 H 1.09001 * 109.49775 * 58.59328 * 13 12 10 35 35 H 1.09001 * 109.49695 * 178.64867 * 13 12 10 36 36 H 1.09005 * 109.58829 * 174.41882 * 14 13 12 37 37 H 1.08997 * 109.59095 * 294.84579 * 14 13 12 38 38 H 0.97005 * 119.99655 * 180.02562 * 19 18 16 39 39 H 1.09003 * 109.55931 * 293.78373 * 24 15 14 40 40 H 1.08999 * 109.61811 * 173.35841 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9222 3.6058 0.0011 6 6 3.3027 3.6799 0.0005 7 6 4.0602 2.5235 0.0000 8 6 3.4359 1.2865 0.0056 9 8 4.1795 0.1478 0.0107 10 6 5.5952 0.2980 0.1353 11 1 5.8166 1.2050 0.6980 12 6 6.1746 -0.9130 0.8699 13 6 7.6862 -0.7377 1.0329 14 6 8.3385 -0.6537 -0.3506 15 7 7.6861 0.4167 -1.1169 16 6 8.4268 1.4167 -1.6884 17 1 9.3517 1.7333 -1.2295 18 6 7.9886 2.0234 -2.8575 19 7 7.0542 1.4505 -3.5861 20 14 8.7253 3.6532 -3.3967 21 1 9.9044 3.4009 -4.2634 22 1 7.7106 4.4285 -4.1547 23 1 9.1465 4.4259 -2.2005 24 6 6.2238 0.3947 -1.2583 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 0.5137 0.8900 28 1 0.2145 2.3196 0.0005 29 1 1.3340 4.5115 0.0011 30 1 3.7906 4.6436 0.0014 31 1 5.1385 2.5842 0.0000 32 1 5.7107 -0.9978 1.8526 33 1 5.9740 -1.8168 0.2945 34 1 7.8885 0.1790 1.5868 35 1 8.0946 -1.5892 1.5772 36 1 9.3998 -0.4300 -0.2412 37 1 8.2149 -1.6033 -0.8712 38 1 6.7483 1.8744 -4.4033 39 1 5.9277 -0.4692 -1.8534 40 1 5.8895 1.3097 -1.7473 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286397326.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:47 Heat of formation + Delta-G solvation = -44.810362 kcal Electronic energy + Delta-G solvation = -22206.361188 eV Core-core repulsion = 18986.799723 eV Total energy + Delta-G solvation = -3219.561465 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57277 -40.00628 -38.40109 -37.50546 -34.87700 -32.21079 -31.52664 -31.25120 -30.18510 -28.03167 -27.26516 -24.54354 -24.03260 -23.15248 -22.50126 -20.82893 -19.61541 -18.78809 -18.12139 -17.45777 -17.02211 -16.67472 -15.98303 -15.86741 -15.64332 -15.59653 -15.41562 -15.09617 -14.39080 -14.35125 -14.10445 -13.67254 -13.49466 -13.05816 -12.99102 -12.95626 -12.64523 -12.50137 -12.25365 -12.08925 -12.01103 -11.96577 -11.78620 -11.62199 -11.50387 -11.15387 -10.61243 -9.68147 -8.84102 -8.66759 -7.90994 -5.42188 0.32637 0.48708 1.44400 1.45879 1.55989 2.23036 2.40362 2.49462 2.78184 3.24605 3.66795 3.85019 3.87098 4.00144 4.08193 4.10686 4.21991 4.28576 4.36747 4.43482 4.45658 4.49756 4.54851 4.74142 4.75610 4.77338 4.92865 5.03174 5.08707 5.14824 5.19323 5.27306 5.36235 5.43477 5.53049 5.57548 5.62017 5.79506 6.19865 6.34740 6.68721 7.07962 7.77382 8.32019 9.14569 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.006277 C = 0.005055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.327799 B = 4459.942763 C = 5537.765201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.337 6.337 3 C 0.076 3.924 4 C -0.170 4.170 5 C -0.117 4.117 6 C -0.123 4.123 7 C -0.186 4.186 8 C 0.076 3.924 9 O -0.321 6.321 10 C 0.068 3.932 11 H 0.067 0.933 12 C -0.102 4.102 13 C -0.117 4.117 14 C 0.133 3.867 15 N -0.605 5.605 16 C -0.270 4.270 17 H 0.073 0.927 18 C -0.046 4.046 19 N -0.934 5.934 20 Si 0.966 3.034 21 H -0.282 1.282 22 H -0.293 1.293 23 H -0.265 1.265 24 C 0.175 3.825 25 H 0.114 0.886 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.143 0.857 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.014 0.986 38 H 0.250 0.750 39 H -0.010 1.010 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.878 1.403 10.709 16.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.030 3.970 4 C -0.188 4.188 5 C -0.135 4.135 6 C -0.141 4.141 7 C -0.205 4.205 8 C 0.031 3.969 9 O -0.235 6.235 10 C 0.011 3.989 11 H 0.085 0.915 12 C -0.139 4.139 13 C -0.156 4.156 14 C 0.008 3.992 15 N -0.330 5.330 16 C -0.400 4.400 17 H 0.091 0.909 18 C -0.242 4.242 19 N -0.579 5.579 20 Si 0.793 3.207 21 H -0.208 1.208 22 H -0.220 1.220 23 H -0.189 1.189 24 C 0.048 3.952 25 H 0.132 0.868 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.184 0.816 29 H 0.180 0.820 30 H 0.160 0.840 31 H 0.138 0.862 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.032 0.968 38 H 0.059 0.941 39 H 0.008 0.992 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.913 1.042 10.558 15.952 hybrid contribution 0.442 0.789 -0.981 1.335 sum -11.470 1.831 9.577 15.054 Atomic orbital electron populations 1.23356 0.76458 1.05428 1.02389 1.86147 1.23433 1.26276 1.89302 1.18531 0.88773 0.86393 1.03269 1.21407 1.01143 0.90641 1.05608 1.21233 0.93916 0.98171 1.00136 1.21182 0.94733 0.97688 1.00537 1.21298 1.00672 0.92162 1.06332 1.18746 0.89353 0.86561 1.02242 1.86087 1.19865 1.29299 1.88216 1.23226 0.76873 1.00052 0.98768 0.91538 1.21490 0.96444 0.96050 0.99940 1.21914 0.93243 1.02805 0.97597 1.21217 0.96501 0.90113 0.91370 1.44204 1.01021 1.26695 1.61058 1.19521 1.06119 1.11117 1.03221 0.90940 1.25936 0.99830 1.02920 0.95532 1.70211 1.33797 1.39137 1.14732 0.85304 0.77369 0.79798 0.78201 1.20826 1.21973 1.18930 1.20791 0.83750 0.98929 0.91741 0.86767 0.91727 0.91022 0.81588 0.81982 0.83956 0.86199 0.90223 0.92256 0.91844 0.88256 0.91698 0.96792 0.94118 0.99226 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.34 -10.94 10.28 -79.57 -0.82 -11.76 16 3 C 0.08 2.58 6.70 22.57 0.15 2.73 16 4 C -0.17 -4.35 9.04 22.35 0.20 -4.15 16 5 C -0.12 -2.87 10.04 22.28 0.22 -2.64 16 6 C -0.12 -3.72 10.04 22.27 0.22 -3.49 16 7 C -0.19 -7.07 8.63 22.35 0.19 -6.88 16 8 C 0.08 3.07 6.68 22.57 0.15 3.22 16 9 O -0.32 -14.13 9.57 -79.65 -0.76 -14.90 16 10 C 0.07 2.94 2.23 30.67 0.07 3.01 16 11 H 0.07 2.84 5.93 -2.38 -0.01 2.82 16 12 C -0.10 -3.65 5.54 30.62 0.17 -3.48 16 13 C -0.12 -3.88 6.08 30.67 0.19 -3.69 16 14 C 0.13 5.59 6.52 86.36 0.56 6.15 16 15 N -0.60 -31.45 2.98 -699.09 -2.08 -33.53 16 16 C -0.27 -15.03 9.56 84.04 0.80 -14.23 16 17 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 18 C -0.05 -2.63 4.92 84.86 0.42 -2.21 16 19 N -0.93 -57.23 11.31 21.65 0.24 -56.99 16 20 Si 0.97 45.11 29.58 68.60 2.03 47.14 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 24 C 0.17 9.14 4.76 86.36 0.41 9.55 16 25 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 27 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 28 H 0.17 2.90 6.30 -2.91 -0.02 2.88 16 29 H 0.16 2.65 8.06 -2.92 -0.02 2.63 16 30 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 31 H 0.12 5.02 5.62 -2.91 -0.02 5.00 16 32 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.06 2.58 7.93 -2.38 -0.02 2.57 16 37 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.06 3.26 5.64 -2.39 -0.01 3.25 16 Total: -1.00 -71.82 321.62 4.51 -67.31 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.03 Total: 17.40 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 4.88 Total: -14.67 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -1.84 Total: -90.52 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -1.58 Total: -26.66 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.82 4.51 -67.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286397326.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.501 kcal (2) G-P(sol) polarization free energy of solvation -71.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds