Wall clock time and date at job start Mon Mar 30 2020 01:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.47607 * 260.00607 * 9 8 7 11 11 C 1.46494 * 119.99742 * 270.00170 * 10 9 8 12 12 C 1.34778 * 119.99464 * 89.99879 * 10 9 8 13 13 O 1.21270 * 120.00549 * 0.02562 * 12 10 9 14 14 C 1.50709 * 119.99170 * 180.02562 * 12 10 9 15 15 C 1.53004 * 109.46705 * 179.97438 * 14 12 10 16 16 C 1.50696 * 109.47148 * 179.97438 * 15 14 12 17 17 H 1.08002 * 119.99623 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00341 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99545 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00048 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47312 * 60.00036 * 20 18 16 22 22 H 1.48502 * 109.47024 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47385 * 299.99903 * 20 18 16 24 24 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 25 25 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 27 27 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 28 28 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 29 29 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 30 30 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 31 31 H 1.09001 * 109.47053 * 20.00832 * 9 8 7 32 32 H 1.09002 * 109.47103 * 140.00310 * 9 8 7 33 33 H 1.08997 * 109.47373 * 90.00403 * 11 10 9 34 34 H 1.09007 * 109.47105 * 209.99919 * 11 10 9 35 35 H 1.08995 * 109.47320 * 329.99475 * 11 10 9 36 36 H 1.08992 * 109.46987 * 299.99665 * 14 12 10 37 37 H 1.09004 * 109.46894 * 60.00366 * 14 12 10 38 38 H 1.09002 * 109.46933 * 300.00138 * 15 14 12 39 39 H 1.09006 * 109.46959 * 59.99791 * 15 14 12 40 40 H 0.97004 * 119.99692 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 7 4.3189 -0.5187 -1.3602 11 6 3.3047 -1.4710 -1.8190 12 6 5.3120 -0.1401 -2.1890 13 8 6.1517 0.6480 -1.8090 14 6 5.3786 -0.6962 -3.5882 15 6 6.5912 -0.1087 -4.3131 16 6 6.6584 -0.6652 -5.7120 17 1 5.9106 -1.3673 -6.0502 18 6 7.6742 -0.2781 -6.5600 19 7 8.5844 0.5773 -6.1481 20 14 7.7570 -0.9674 -8.2941 21 1 6.5185 -0.6066 -9.0298 22 1 8.9339 -0.3973 -8.9978 23 1 7.8839 -2.4457 -8.2337 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 0.2128 2.3203 -0.0010 28 1 1.3339 4.5114 0.0026 29 1 3.7920 4.6381 -0.0024 30 1 5.1344 2.5754 -0.0023 31 1 5.2613 0.2452 0.3508 32 1 3.7927 -0.7115 0.6610 33 1 2.4744 -0.9282 -2.2705 34 1 3.7440 -2.1423 -2.5570 35 1 2.9412 -2.0514 -0.9710 36 1 5.4719 -1.7812 -3.5438 37 1 4.4695 -0.4313 -4.1281 38 1 6.4975 0.9763 -4.3574 39 1 7.5005 -0.3731 -3.7732 40 1 9.2990 0.8499 -6.7448 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290866463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:18 Heat of formation + Delta-G solvation = -53.569636 kcal Electronic energy + Delta-G solvation = -21451.125988 eV Core-core repulsion = 18231.184693 eV Total energy + Delta-G solvation = -3219.941295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.43217 -39.07374 -37.41995 -35.21367 -33.45231 -32.07758 -30.69213 -30.13100 -27.78301 -26.92649 -26.23199 -24.73797 -22.14839 -21.99137 -20.90573 -18.51345 -18.00788 -16.87725 -16.25593 -16.11603 -15.97991 -15.54824 -15.30417 -14.89697 -14.42634 -14.37472 -13.81728 -13.48052 -12.97323 -12.78666 -12.57095 -12.25071 -12.23209 -12.09021 -11.99816 -11.79499 -11.25250 -11.23029 -11.03426 -10.95793 -10.86659 -10.56887 -9.87894 -9.55707 -9.19347 -9.05450 -8.76538 -8.36912 -8.26873 -8.14256 -5.91537 -3.95606 1.26632 1.41887 3.14199 3.32197 3.37242 3.41069 3.42507 3.45556 3.90063 4.50958 4.66522 4.73399 4.90419 4.93615 5.01216 5.21514 5.22643 5.32370 5.38825 5.43187 5.46326 5.57691 5.71253 5.75967 5.90339 5.96241 5.98291 6.25840 6.30685 6.33139 6.41821 6.57540 6.77400 6.85617 6.98394 7.28714 7.79181 7.87525 7.93030 8.12800 8.44322 8.85489 9.12890 9.67450 11.19441 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023710 B = 0.003914 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.646777 B = 7151.194054 C = 7553.982498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.137 3.863 4 C -0.215 4.215 5 C -0.082 4.082 6 C -0.159 4.159 7 C -0.056 4.056 8 C -0.132 4.132 9 C 0.165 3.835 10 N -0.621 5.621 11 C 0.091 3.909 12 C 0.511 3.489 13 O -0.534 6.534 14 C -0.127 4.127 15 C 0.038 3.962 16 C -0.526 4.526 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.054 0.946 25 H 0.098 0.902 26 H 0.052 0.948 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.022 0.978 39 H 0.023 0.977 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.152 0.054 15.184 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.091 3.909 4 C -0.234 4.234 5 C -0.100 4.100 6 C -0.177 4.177 7 C -0.075 4.075 8 C -0.134 4.134 9 C 0.042 3.958 10 N -0.356 5.356 11 C -0.053 4.053 12 C 0.302 3.698 13 O -0.409 6.409 14 C -0.167 4.167 15 C 0.000 4.000 16 C -0.564 4.564 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.529 5.529 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.072 0.928 25 H 0.117 0.883 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.153 0.847 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.436 0.354 15.318 23.211 hybrid contribution -0.433 -0.113 -1.044 1.136 sum -17.869 0.242 14.274 22.871 Atomic orbital electron populations 1.23021 0.78797 1.03751 1.01162 1.86081 1.20935 1.26849 1.88643 1.18824 0.91665 0.84127 0.96255 1.21150 0.99687 0.92476 1.10083 1.20919 0.94714 0.96836 0.97581 1.21096 0.93856 0.98594 1.04155 1.21108 1.00656 0.90877 0.94848 1.19688 0.90651 0.96739 1.06349 1.20077 0.99655 0.91761 0.84338 1.48059 1.28393 1.45887 1.13309 1.21670 0.91223 0.92151 1.00215 1.21557 0.79485 0.80783 0.88016 1.90624 1.39237 1.34308 1.76723 1.21872 1.03622 1.01007 0.90208 1.18894 0.90886 0.96578 0.93612 1.21193 1.10934 1.26472 0.97850 0.92733 1.25017 0.95697 0.95158 0.98465 1.69994 1.14231 1.32540 1.36119 0.86664 0.77418 0.79243 0.84667 1.20296 1.21299 1.20257 0.92774 0.88336 0.92932 0.85769 0.86073 0.85885 0.84724 0.89370 0.90087 0.93333 0.90984 0.91566 0.90361 0.90514 0.95915 0.95856 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.40 8.52 -19.42 -0.17 -3.57 16 3 C 0.14 1.73 6.66 -39.22 -0.26 1.47 16 4 C -0.22 -2.41 9.04 -39.43 -0.36 -2.76 16 5 C -0.08 -0.92 10.04 -39.60 -0.40 -1.32 16 6 C -0.16 -1.99 10.04 -39.56 -0.40 -2.38 16 7 C -0.06 -0.81 9.67 -39.61 -0.38 -1.19 16 8 C -0.13 -1.89 5.47 -104.48 -0.57 -2.46 16 9 C 0.16 2.36 5.25 -5.20 -0.03 2.34 16 10 N -0.62 -9.98 2.86 -182.96 -0.52 -10.51 16 11 C 0.09 1.14 9.21 59.84 0.55 1.70 16 12 C 0.51 10.50 7.67 -10.98 -0.08 10.41 16 13 O -0.53 -12.80 15.56 5.57 0.09 -12.71 16 14 C -0.13 -2.73 4.19 -27.88 -0.12 -2.85 16 15 C 0.04 1.05 4.26 -27.88 -0.12 0.93 16 16 C -0.53 -15.24 9.11 -34.44 -0.31 -15.55 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -27.83 13.29 55.43 0.74 -27.09 16 20 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 27 H 0.12 1.07 6.30 -52.49 -0.33 0.74 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.13 2.03 8.04 -52.49 -0.42 1.61 16 31 H 0.09 1.35 7.28 -51.93 -0.38 0.97 16 32 H 0.08 0.99 7.61 -51.93 -0.39 0.59 16 33 H 0.05 0.61 8.02 -51.93 -0.42 0.19 16 34 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 35 H 0.07 0.69 7.89 -51.93 -0.41 0.28 16 36 H 0.08 1.53 7.40 -51.93 -0.38 1.15 16 37 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 38 H 0.02 0.69 8.10 -51.93 -0.42 0.26 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -34.90 335.88 -7.35 -42.24 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.94 Total: -1.50 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.58 Total: -8.87 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.21 Total: -37.60 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.08 Total: -16.28 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.90 -7.35 -42.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290866463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.325 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds