Wall clock time and date at job start Mon Mar 30 2020 01:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46504 * 119.99757 * 2 1 4 4 C 1.53001 * 109.46908 * 270.00030 * 3 2 1 5 5 O 1.42902 * 109.47386 * 65.00040 * 4 3 2 6 6 C 1.35898 * 116.99694 * 180.02562 * 5 4 3 7 7 C 1.38735 * 120.05254 * 179.97438 * 6 5 4 8 8 C 1.38144 * 119.94607 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.05233 * 0.02562 * 8 7 6 10 10 C 1.38269 * 120.11595 * 359.95530 * 9 8 7 11 11 C 1.38142 * 120.04935 * 0.04230 * 10 9 8 12 12 C 1.34770 * 120.00000 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99855 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00292 * 0.02562 * 12 2 1 15 15 C 1.52998 * 109.47323 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.47323 * 179.97438 * 15 14 12 17 17 H 1.08005 * 119.99951 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00423 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99436 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00443 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46930 * 59.99615 * 20 18 16 22 22 H 1.48494 * 109.47352 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46961 * 300.00207 * 20 18 16 24 24 H 1.09002 * 109.46952 * 90.00230 * 1 2 3 25 25 H 1.08997 * 109.47022 * 210.00303 * 1 2 3 26 26 H 1.09004 * 109.47123 * 330.00246 * 1 2 3 27 27 H 1.08997 * 109.46959 * 150.00039 * 3 2 1 28 28 H 1.09000 * 109.47126 * 29.99686 * 3 2 1 29 29 H 1.08999 * 109.46920 * 304.99793 * 4 3 2 30 30 H 1.08998 * 109.47220 * 185.00164 * 4 3 2 31 31 H 1.08002 * 120.02704 * 359.70561 * 7 6 5 32 32 H 1.08001 * 119.97447 * 179.97438 * 8 7 6 33 33 H 1.08000 * 119.94089 * 179.97438 * 9 8 7 34 34 H 1.07992 * 119.97577 * 180.02562 * 10 9 8 35 35 H 1.08005 * 120.02748 * 179.97438 * 11 10 9 36 36 H 1.09004 * 109.46694 * 299.99566 * 14 12 2 37 37 H 1.09000 * 109.46897 * 59.99594 * 14 12 2 38 38 H 1.09004 * 109.46725 * 299.99355 * 15 14 12 39 39 H 1.08997 * 109.47783 * 59.99349 * 15 14 12 40 40 H 0.97003 * 119.99746 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 8 1.2060 1.9935 -2.0815 6 6 1.2554 2.4011 -3.3769 7 6 0.0828 2.6925 -4.0588 8 6 0.1356 3.1072 -5.3754 9 6 1.3557 3.2314 -6.0139 10 6 2.5258 2.9420 -5.3365 11 6 2.4783 2.5270 -4.0197 12 6 2.1389 -1.1671 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0018 16 6 1.6263 -4.9403 0.0024 17 1 0.5463 -4.9403 0.0024 18 6 2.3157 -6.1344 0.0031 19 7 3.6308 -6.1343 0.0026 20 14 1.3818 -7.7521 0.0046 21 1 0.5276 -7.8316 -1.2075 22 1 2.3468 -8.8808 0.0057 23 1 0.5284 -7.8299 1.2174 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 3.1499 1.1385 0.5138 28 1 1.6084 2.0284 0.5138 29 1 2.9643 0.9131 -1.9815 30 1 3.0732 2.6064 -1.4439 31 1 -0.8708 2.5910 -3.5619 32 1 -0.7770 3.3337 -5.9068 33 1 1.3948 3.5553 -7.0434 34 1 3.4776 3.0402 -5.8372 35 1 3.3925 2.3007 -3.4910 36 1 0.7586 -2.5298 0.8904 37 1 0.7591 -2.5302 -0.8897 38 1 3.0070 -3.5778 -0.8878 39 1 3.0058 -3.5771 0.8921 40 1 4.1159 -6.9743 0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290890890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:37 Heat of formation + Delta-G solvation = -77.230714 kcal Electronic energy + Delta-G solvation = -20849.309420 eV Core-core repulsion = 17628.342103 eV Total energy + Delta-G solvation = -3220.967317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.27865 -40.65494 -38.41482 -36.54903 -35.60784 -33.27619 -32.12699 -31.52467 -30.22910 -27.93043 -27.25910 -25.15010 -23.56353 -23.22135 -22.33024 -20.02269 -19.32378 -18.73110 -17.66889 -17.51111 -17.08736 -16.84732 -16.49510 -16.41451 -16.09498 -15.40973 -14.91099 -14.62283 -14.34508 -14.20579 -14.14481 -13.73125 -13.59539 -13.38656 -13.29827 -13.11421 -12.77792 -12.63732 -12.49171 -12.43942 -11.98983 -11.92597 -11.73848 -11.58969 -11.33312 -10.70145 -10.56658 -9.95678 -9.70419 -9.16651 -8.18610 -6.32992 0.38825 0.49584 1.41524 1.46335 1.54055 1.63707 2.01613 2.24048 2.43137 2.84893 3.14117 3.75251 3.79025 3.94048 4.02212 4.06698 4.18578 4.27922 4.37991 4.40311 4.47551 4.50376 4.51111 4.61325 4.67811 4.78676 4.80040 4.95509 5.08116 5.10356 5.36555 5.46542 5.48311 5.58836 5.59909 5.61225 5.83695 5.85726 6.16669 6.34642 6.42725 6.84897 7.22662 7.37287 8.93960 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020996 B = 0.003365 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.246254 B = 8318.132587 C = 8758.616566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.614 5.614 3 C 0.117 3.883 4 C 0.049 3.951 5 O -0.315 6.315 6 C 0.108 3.892 7 C -0.166 4.166 8 C -0.083 4.083 9 C -0.166 4.166 10 C -0.090 4.090 11 C -0.228 4.228 12 C 0.508 3.492 13 O -0.587 6.587 14 C -0.117 4.117 15 C 0.044 3.956 16 C -0.545 4.545 17 H 0.075 0.925 18 C -0.007 4.007 19 N -0.938 5.938 20 Si 0.975 3.025 21 H -0.263 1.263 22 H -0.287 1.287 23 H -0.261 1.261 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.120 0.880 29 H 0.038 0.962 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.096 0.904 38 H -0.021 1.021 39 H -0.017 1.017 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 22.458 -7.322 25.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.347 5.347 3 C -0.006 4.006 4 C -0.027 4.027 5 O -0.229 6.229 6 C 0.063 3.937 7 C -0.185 4.185 8 C -0.101 4.101 9 C -0.184 4.184 10 C -0.108 4.108 11 C -0.247 4.247 12 C 0.298 3.702 13 O -0.467 6.467 14 C -0.156 4.156 15 C 0.007 3.993 16 C -0.583 4.583 17 H 0.093 0.907 18 C -0.204 4.204 19 N -0.578 5.578 20 Si 0.798 3.202 21 H -0.187 1.187 22 H -0.213 1.213 23 H -0.186 1.186 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.111 0.889 28 H 0.138 0.862 29 H 0.057 0.943 30 H 0.109 0.891 31 H 0.157 0.843 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.114 0.886 38 H -0.003 1.003 39 H 0.002 0.998 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.399 22.338 -7.175 25.275 hybrid contribution 0.636 -1.043 -0.032 1.222 sum -8.764 21.295 -7.208 24.130 Atomic orbital electron populations 1.21997 0.76871 1.04558 1.02681 1.47972 1.08682 1.04833 1.73184 1.21658 0.99512 0.85479 0.93921 1.23270 0.84991 1.00346 0.94128 1.86029 1.32852 1.81344 1.22712 1.19373 0.94912 0.95323 0.84080 1.20730 0.96681 1.05378 0.95677 1.21351 0.99312 0.96286 0.93157 1.21431 0.92190 1.03271 1.01476 1.21276 0.99931 0.96351 0.93277 1.21484 0.97006 1.08317 0.97885 1.21381 0.87700 0.86797 0.74296 1.90633 1.16387 1.88133 1.51541 1.21637 0.99318 0.90381 1.04268 1.18672 0.93629 0.92452 0.94566 1.21683 0.93974 0.91632 1.51016 0.90671 1.26150 0.95742 1.03973 0.94547 1.70174 1.08324 1.27903 1.51354 0.85362 0.78064 0.77245 0.79511 1.18742 1.21252 1.18561 0.92373 0.90227 0.88441 0.88852 0.86171 0.94347 0.89054 0.84254 0.82698 0.83534 0.84204 0.85760 0.87734 0.88602 1.00261 0.99819 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.68 9.89 127.77 1.26 2.94 16 2 N -0.61 -17.71 2.84 -846.73 -2.40 -20.11 16 3 C 0.12 2.76 5.86 86.38 0.51 3.26 16 4 C 0.05 1.17 5.08 71.98 0.37 1.54 16 5 O -0.32 -7.70 9.69 -92.40 -0.90 -8.60 16 6 C 0.11 2.60 6.69 22.51 0.15 2.75 16 7 C -0.17 -3.35 9.99 22.37 0.22 -3.13 16 8 C -0.08 -1.36 10.04 22.25 0.22 -1.14 16 9 C -0.17 -2.72 10.04 22.28 0.22 -2.49 16 10 C -0.09 -1.72 10.04 22.25 0.22 -1.50 16 11 C -0.23 -5.23 9.04 22.36 0.20 -5.03 16 12 C 0.51 20.46 7.67 87.66 0.67 21.13 16 13 O -0.59 -29.06 15.56 -3.04 -0.05 -29.11 16 14 C -0.12 -4.89 4.19 29.85 0.13 -4.77 16 15 C 0.04 2.54 4.26 29.85 0.13 2.67 16 16 C -0.55 -31.62 9.11 25.60 0.23 -31.39 16 17 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 18 C -0.01 -0.39 5.46 84.65 0.46 0.07 16 19 N -0.94 -60.22 13.29 21.45 0.28 -59.94 16 20 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 21 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 24 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.08 1.60 6.44 -2.39 -0.02 1.58 16 26 H 0.10 1.44 7.89 -2.39 -0.02 1.42 16 27 H 0.09 2.44 7.42 -2.39 -0.02 2.42 16 28 H 0.12 1.97 7.89 -2.39 -0.02 1.95 16 29 H 0.04 1.16 7.66 -2.39 -0.02 1.14 16 30 H 0.09 1.73 7.66 -2.39 -0.02 1.71 16 31 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 33 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 34 H 0.14 2.06 8.06 -2.91 -0.02 2.03 16 35 H 0.12 2.77 6.30 -2.91 -0.02 2.76 16 36 H 0.10 3.84 7.40 -2.39 -0.02 3.82 16 37 H 0.10 3.68 8.11 -2.39 -0.02 3.66 16 38 H -0.02 -1.36 8.10 -2.39 -0.02 -1.38 16 39 H -0.02 -1.07 8.10 -2.39 -0.02 -1.08 16 40 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -78.93 339.00 4.98 -73.95 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.01 Total: 12.14 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 5.00 Total: -15.09 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -2.12 Total: -80.05 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -0.94 Total: -37.71 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -78.93 4.98 -73.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290890890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.280 kcal (2) G-P(sol) polarization free energy of solvation -78.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds