Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 N 1.46496 * 109.47378 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00347 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99879 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00079 * 180.02562 * 10 9 8 13 13 C 1.53000 * 109.47110 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47114 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00473 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00200 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99710 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00165 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47474 * 59.99511 * 18 16 14 20 20 H 1.48501 * 109.46754 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47026 * 299.99476 * 18 16 14 22 22 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 23 23 C 1.38143 * 120.05579 * 359.44512 * 22 6 5 24 24 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 25 25 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 27 27 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 30 30 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 31 31 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 32 32 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 33 33 H 0.97001 * 119.99484 * 0.02562 * 9 8 7 34 34 H 1.09000 * 109.47543 * 300.00434 * 12 10 9 35 35 H 1.09000 * 109.46926 * 60.00402 * 12 10 9 36 36 H 1.09005 * 109.47322 * 299.99831 * 13 12 10 37 37 H 1.08991 * 109.47114 * 60.00075 * 13 12 10 38 38 H 0.96995 * 120.00177 * 180.02562 * 17 16 14 39 39 H 1.08001 * 119.97259 * 179.69844 * 22 6 5 40 40 H 1.07992 * 120.02912 * 180.24892 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 7 4.8813 6.7803 -1.4383 10 6 5.1870 7.3818 -2.6049 11 8 4.9115 6.8425 -3.6557 12 6 5.8711 8.7246 -2.6038 13 6 6.1018 9.1807 -4.0459 14 6 6.7865 10.5231 -4.0447 15 1 7.0321 11.0033 -3.1090 16 6 7.0984 11.1390 -5.2382 17 7 6.7989 10.5546 -6.3777 18 14 7.9465 12.8034 -5.2368 19 1 9.2521 12.6932 -4.5380 20 1 8.1694 13.2465 -6.6365 21 1 7.0914 13.7940 -4.5348 22 6 1.9209 3.6048 0.0081 23 6 1.2914 2.3752 0.0014 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 4.0208 0.3801 -0.0005 28 1 5.1344 2.5752 -0.0008 29 1 3.3580 5.7459 0.5176 30 1 4.9441 4.9378 0.5160 31 1 4.8445 4.7475 -1.9543 32 1 3.2585 5.5555 -1.9527 33 1 5.1019 7.2114 -0.5978 34 1 5.2432 9.4519 -2.0891 35 1 6.8291 8.6438 -2.0902 36 1 6.7296 8.4535 -4.5609 37 1 5.1437 9.2615 -4.5590 38 1 7.0186 10.9876 -7.2173 39 1 1.3340 4.5114 0.0143 40 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290945128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = -71.273648 kcal Electronic energy + Delta-G solvation = -19857.112590 eV Core-core repulsion = 16636.403591 eV Total energy + Delta-G solvation = -3220.708999 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45069 -39.13214 -38.03850 -35.08296 -33.41465 -32.24977 -31.35483 -30.87714 -28.65196 -27.30648 -25.58679 -23.45693 -22.90356 -21.42966 -21.16619 -19.54611 -18.45995 -16.85473 -16.62624 -16.09379 -15.93208 -15.61612 -15.31152 -15.18934 -14.54879 -14.38467 -14.25511 -13.87236 -13.47903 -13.29340 -12.90483 -12.38663 -12.23535 -12.16327 -12.12532 -11.74092 -11.40146 -11.19128 -11.12951 -11.01532 -10.88638 -10.60010 -9.92258 -9.63597 -9.27668 -9.15960 -8.99406 -8.73712 -8.36127 -8.29491 -5.93703 -3.98175 1.06984 1.12212 2.94180 3.30883 3.35895 3.39425 3.40937 3.42723 3.65793 4.45881 4.49179 4.57067 4.70731 4.72121 4.76867 4.92682 4.97624 5.07448 5.10274 5.23541 5.36129 5.40894 5.48446 5.62914 5.71506 5.86404 5.99327 6.04292 6.08297 6.26283 6.27907 6.39032 6.47487 6.76674 6.92988 7.07085 7.76604 7.89452 7.93523 8.10099 8.41354 8.83167 9.10530 9.65063 11.17225 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.053086 B = 0.002244 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.319683 B =12477.026847 C =12627.944567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.150 4.150 5 C -0.073 4.073 6 C -0.115 4.115 7 C -0.087 4.087 8 C 0.124 3.876 9 N -0.746 5.746 10 C 0.508 3.492 11 O -0.535 6.535 12 C -0.130 4.130 13 C 0.037 3.963 14 C -0.528 4.528 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.073 4.073 23 C -0.206 4.206 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.055 0.945 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.397 0.603 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.126 0.874 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.289 -18.654 18.288 28.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.076 3.924 4 C -0.168 4.168 5 C -0.091 4.091 6 C -0.116 4.116 7 C -0.124 4.124 8 C 0.000 4.000 9 N -0.401 5.401 10 C 0.297 3.703 11 O -0.410 6.410 12 C -0.170 4.170 13 C -0.001 4.001 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.091 4.091 23 C -0.225 4.225 24 H 0.074 0.926 25 H 0.117 0.883 26 H 0.073 0.927 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.230 0.770 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.144 0.856 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.406 -19.223 17.289 28.258 hybrid contribution 0.217 1.184 0.347 1.252 sum -11.189 -18.039 17.636 27.597 Atomic orbital electron populations 1.23054 0.78379 1.03929 1.01425 1.86065 1.21414 1.27052 1.88787 1.19062 0.92431 0.84128 0.96749 1.20427 0.91354 0.98712 1.06340 1.20912 1.00016 0.90939 0.97270 1.19628 0.93524 0.94812 1.03609 1.20730 1.01026 0.93742 0.96930 1.21222 0.97970 0.85316 0.95482 1.46221 1.63388 1.21174 1.09281 1.21562 0.77972 0.88058 0.82737 1.90672 1.52803 1.66163 1.31384 1.21862 0.99502 0.91082 1.04556 1.18894 0.97829 0.95613 0.87754 1.21196 1.39114 1.03946 0.92333 0.92650 1.25037 0.95973 0.97778 0.95664 1.69989 1.47093 1.38486 0.97277 0.86642 0.80010 0.84252 0.76948 1.20260 1.21305 1.20274 1.20875 0.93972 0.97163 0.97110 1.21220 1.00026 0.92333 1.08915 0.92551 0.88259 0.92667 0.85171 0.85115 0.90391 0.90302 0.91750 0.91838 0.76965 0.90276 0.90256 0.95836 0.95849 0.92904 0.85595 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.03 10.50 -19.44 -0.20 -3.23 16 3 C 0.12 1.21 6.69 -39.21 -0.26 0.95 16 4 C -0.15 -1.45 9.99 -39.43 -0.39 -1.84 16 5 C -0.07 -0.68 9.69 -39.61 -0.38 -1.07 16 6 C -0.11 -1.09 5.14 -104.60 -0.54 -1.63 16 7 C -0.09 -0.76 5.46 -27.88 -0.15 -0.91 16 8 C 0.12 1.56 5.66 -4.04 -0.02 1.54 16 9 N -0.75 -10.42 5.56 -60.30 -0.33 -10.76 16 10 C 0.51 9.95 7.83 -10.99 -0.09 9.86 16 11 O -0.54 -12.99 15.98 5.56 0.09 -12.90 16 12 C -0.13 -2.66 5.64 -27.89 -0.16 -2.82 16 13 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 14 C -0.53 -15.11 9.11 -34.44 -0.31 -15.43 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.71 13.29 55.43 0.74 -26.97 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.07 -0.67 9.69 -39.61 -0.38 -1.06 16 23 C -0.21 -1.87 9.04 -39.43 -0.36 -2.22 16 24 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 25 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.25 7.66 -51.93 -0.40 -0.14 16 27 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 28 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 30 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.40 4.18 8.47 -40.82 -0.35 3.84 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.13 0.88 6.30 -52.49 -0.33 0.55 16 LS Contribution 343.03 15.07 5.17 5.17 Total: -1.00 -35.76 343.03 -7.92 -43.68 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -6.08 Total: -0.75 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.27 Total: -11.02 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.40 Total: -37.73 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.12 Total: -16.13 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.76 -7.92 -43.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290945128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.597 kcal (2) G-P(sol) polarization free energy of solvation -35.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds