Wall clock time and date at job start Mon Mar 30 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 N 1.46496 * 109.47378 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00347 * 179.97438 * 9 8 7 11 11 O 1.21281 * 119.99879 * 0.02562 * 10 9 8 12 12 C 1.50696 * 120.00079 * 180.02562 * 10 9 8 13 13 C 1.53000 * 109.47110 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47114 * 180.02562 * 13 12 10 15 15 H 1.08002 * 120.00473 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00200 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99710 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00165 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47474 * 59.99511 * 18 16 14 20 20 H 1.48501 * 109.46754 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47026 * 299.99476 * 18 16 14 22 22 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 23 23 C 1.38143 * 120.05579 * 359.44512 * 22 6 5 24 24 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 25 25 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 27 27 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 30 30 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 31 31 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 32 32 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 33 33 H 0.97001 * 119.99484 * 0.02562 * 9 8 7 34 34 H 1.09000 * 109.47543 * 300.00434 * 12 10 9 35 35 H 1.09000 * 109.46926 * 60.00402 * 12 10 9 36 36 H 1.09005 * 109.47322 * 299.99831 * 13 12 10 37 37 H 1.08991 * 109.47114 * 60.00075 * 13 12 10 38 38 H 0.96995 * 120.00177 * 180.02562 * 17 16 14 39 39 H 1.08001 * 119.97259 * 179.69844 * 22 6 5 40 40 H 1.07992 * 120.02912 * 180.24892 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 7 4.8813 6.7803 -1.4383 10 6 5.1870 7.3818 -2.6049 11 8 4.9115 6.8425 -3.6557 12 6 5.8711 8.7246 -2.6038 13 6 6.1018 9.1807 -4.0459 14 6 6.7865 10.5231 -4.0447 15 1 7.0321 11.0033 -3.1090 16 6 7.0984 11.1390 -5.2382 17 7 6.7989 10.5546 -6.3777 18 14 7.9465 12.8034 -5.2368 19 1 9.2521 12.6932 -4.5380 20 1 8.1694 13.2465 -6.6365 21 1 7.0914 13.7940 -4.5348 22 6 1.9209 3.6048 0.0081 23 6 1.2914 2.3752 0.0014 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 4.0208 0.3801 -0.0005 28 1 5.1344 2.5752 -0.0008 29 1 3.3580 5.7459 0.5176 30 1 4.9441 4.9378 0.5160 31 1 4.8445 4.7475 -1.9543 32 1 3.2585 5.5555 -1.9527 33 1 5.1019 7.2114 -0.5978 34 1 5.2432 9.4519 -2.0891 35 1 6.8291 8.6438 -2.0902 36 1 6.7296 8.4535 -4.5609 37 1 5.1437 9.2615 -4.5590 38 1 7.0186 10.9876 -7.2173 39 1 1.3340 4.5114 0.0143 40 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290945128.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:52 Heat of formation + Delta-G solvation = -95.538741 kcal Electronic energy + Delta-G solvation = -19858.164804 eV Core-core repulsion = 16636.403591 eV Total energy + Delta-G solvation = -3221.761212 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13072 -40.61003 -38.77036 -36.29277 -35.52013 -33.41495 -32.68430 -32.01378 -29.51753 -28.16684 -27.27382 -24.62711 -23.60446 -23.15175 -21.97988 -21.05300 -19.10475 -18.78630 -17.44678 -17.30764 -17.04575 -16.63666 -16.63460 -16.45333 -16.03547 -15.46121 -15.12702 -14.78876 -14.59682 -14.36015 -14.16005 -13.87855 -13.76239 -13.22702 -12.92578 -12.84888 -12.76412 -12.54546 -12.44320 -12.26323 -11.88580 -11.83369 -11.67377 -11.61851 -11.30884 -10.72317 -10.55028 -10.05870 -9.94506 -9.06803 -8.16550 -6.30850 0.38441 0.40826 1.43072 1.47872 1.55557 1.74669 2.27880 2.38608 2.46578 2.78832 3.16113 3.82658 3.90790 3.98021 4.08972 4.13636 4.21371 4.31623 4.37393 4.44608 4.52166 4.55011 4.59101 4.62550 4.70311 4.76173 4.93781 5.05295 5.12418 5.16735 5.30972 5.38247 5.48571 5.55120 5.65061 5.68543 5.82685 5.87141 6.19017 6.43842 6.66800 6.87899 7.38534 7.40470 8.95967 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.053086 B = 0.002244 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.319683 B =12477.026847 C =12627.944567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.108 3.892 4 C -0.167 4.167 5 C -0.079 4.079 6 C -0.127 4.127 7 C -0.071 4.071 8 C 0.125 3.875 9 N -0.717 5.717 10 C 0.509 3.491 11 O -0.594 6.594 12 C -0.119 4.119 13 C 0.040 3.960 14 C -0.543 4.543 15 H 0.078 0.922 16 C -0.010 4.010 17 N -0.939 5.939 18 Si 0.976 3.024 19 H -0.262 1.262 20 H -0.289 1.289 21 H -0.262 1.262 22 C -0.081 4.081 23 C -0.213 4.213 24 H 0.060 0.940 25 H 0.118 0.882 26 H 0.066 0.934 27 H 0.136 0.864 28 H 0.144 0.856 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.419 0.581 34 H 0.106 0.894 35 H 0.106 0.894 36 H -0.019 1.019 37 H -0.019 1.019 38 H 0.262 0.738 39 H 0.141 0.859 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.173 -17.602 20.974 29.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.063 3.937 4 C -0.185 4.185 5 C -0.097 4.097 6 C -0.128 4.128 7 C -0.109 4.109 8 C 0.001 3.999 9 N -0.371 5.371 10 C 0.297 3.703 11 O -0.474 6.474 12 C -0.159 4.159 13 C 0.003 3.997 14 C -0.581 4.581 15 H 0.096 0.904 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.799 3.201 19 H -0.186 1.186 20 H -0.214 1.214 21 H -0.186 1.186 22 C -0.099 4.099 23 C -0.231 4.231 24 H 0.079 0.921 25 H 0.136 0.864 26 H 0.084 0.916 27 H 0.154 0.846 28 H 0.162 0.838 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.256 0.744 34 H 0.124 0.876 35 H 0.124 0.876 36 H -0.001 1.001 37 H -0.001 1.001 38 H 0.071 0.929 39 H 0.159 0.841 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.298 -18.178 20.069 29.340 hybrid contribution 0.107 0.746 -0.474 0.890 sum -11.190 -17.432 19.595 28.515 Atomic orbital electron populations 1.23318 0.76592 1.05502 1.02150 1.86039 1.23380 1.27055 1.88769 1.19299 0.92826 0.84703 0.96903 1.20655 0.91736 0.99296 1.06819 1.21138 1.00848 0.90848 0.96868 1.19762 0.93837 0.95074 1.04148 1.20631 1.02409 0.93693 0.94140 1.21306 0.96595 0.83905 0.98112 1.45888 1.61451 1.21270 1.08498 1.21378 0.77726 0.87845 0.83354 1.90660 1.55447 1.67453 1.33813 1.21638 1.01710 0.92299 1.00231 1.18697 0.94660 0.94852 0.91509 1.21707 1.38726 1.04366 0.93331 0.90428 1.26181 0.96739 1.02614 0.95151 1.70179 1.48690 1.40800 0.98196 0.85345 0.79226 0.78437 0.77047 1.18638 1.21449 1.18635 1.21148 0.94198 0.97833 0.96678 1.21463 1.01051 0.92053 1.08552 0.92125 0.86396 0.91572 0.84598 0.83782 0.88473 0.88449 0.93275 0.93298 0.74354 0.87566 0.87570 1.00096 1.00083 0.92890 0.84144 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.24 10.50 -92.47 -0.97 -7.21 16 3 C 0.11 2.10 6.69 22.51 0.15 2.25 16 4 C -0.17 -3.17 9.99 22.37 0.22 -2.94 16 5 C -0.08 -1.39 9.69 22.25 0.22 -1.17 16 6 C -0.13 -2.21 5.14 -19.85 -0.10 -2.31 16 7 C -0.07 -1.06 5.46 29.85 0.16 -0.90 16 8 C 0.12 2.97 5.66 86.38 0.49 3.46 16 9 N -0.72 -18.60 5.56 -463.07 -2.57 -21.17 16 10 C 0.51 19.77 7.83 87.66 0.69 20.45 16 11 O -0.59 -29.94 15.98 -3.03 -0.05 -29.99 16 12 C -0.12 -4.75 5.64 29.85 0.17 -4.58 16 13 C 0.04 2.28 4.26 29.85 0.13 2.41 16 14 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 15 H 0.08 4.00 7.74 -2.91 -0.02 3.97 16 16 C -0.01 -0.56 5.46 84.66 0.46 -0.10 16 17 N -0.94 -60.19 13.29 21.45 0.28 -59.91 16 18 Si 0.98 44.44 29.54 68.60 2.03 46.47 16 19 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 22 C -0.08 -1.36 9.69 22.25 0.22 -1.14 16 23 C -0.21 -3.61 9.04 22.37 0.20 -3.41 16 24 H 0.06 0.55 7.66 -2.39 -0.02 0.53 16 25 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 27 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 28 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.10 1.12 8.08 -2.39 -0.02 1.10 16 30 H 0.10 1.14 8.08 -2.39 -0.02 1.12 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.42 7.30 8.47 -92.71 -0.79 6.51 16 34 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 35 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 36 H -0.02 -1.24 8.10 -2.38 -0.02 -1.26 16 37 H -0.02 -1.23 8.10 -2.39 -0.02 -1.25 16 38 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.15 1.80 6.30 -2.91 -0.02 1.78 16 Total: -1.00 -81.36 343.03 3.31 -78.05 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.24 Total: 11.33 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 4.35 Total: -17.56 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -2.29 Total: -81.08 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.02 Total: -37.20 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -81.36 3.31 -78.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290945128.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.488 kcal (2) G-P(sol) polarization free energy of solvation -81.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds