Wall clock time and date at job start Mon Mar 30 2020 01:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 116.99799 * 2 1 4 4 C 1.38729 * 120.05042 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.94076 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05750 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.94498 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47390 * 90.00144 * 7 6 5 9 9 C 1.46506 * 119.99759 * 89.99689 * 8 7 6 10 10 C 1.34771 * 120.00157 * 270.00017 * 8 7 6 11 11 O 1.21283 * 120.00062 * 0.02562 * 10 8 7 12 12 C 1.50700 * 120.00216 * 179.97438 * 10 8 7 13 13 C 1.52999 * 109.47172 * 179.97438 * 12 10 8 14 14 C 1.50706 * 109.46844 * 180.02562 * 13 12 10 15 15 H 1.07992 * 120.00404 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99867 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99793 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00291 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46877 * 59.99532 * 18 16 14 20 20 H 1.48493 * 109.47305 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46806 * 300.00152 * 18 16 14 22 22 C 1.38266 * 120.10959 * 0.25798 * 6 5 4 23 23 C 1.38154 * 120.05402 * 359.45000 * 22 6 5 24 24 H 1.08999 * 109.47208 * 300.00178 * 1 2 3 25 25 H 1.09000 * 109.46919 * 60.00087 * 1 2 3 26 26 H 1.09002 * 109.46953 * 179.97438 * 1 2 3 27 27 H 1.08007 * 120.03149 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.97105 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.47441 * 329.99864 * 7 6 5 30 30 H 1.08999 * 109.46821 * 210.00382 * 7 6 5 31 31 H 1.09001 * 109.47060 * 90.00688 * 9 8 7 32 32 H 1.09004 * 109.47073 * 210.00177 * 9 8 7 33 33 H 1.09000 * 109.47212 * 330.00260 * 9 8 7 34 34 H 1.09000 * 109.47357 * 300.00116 * 12 10 8 35 35 H 1.08998 * 109.46869 * 60.00030 * 12 10 8 36 36 H 1.09000 * 109.47535 * 299.99991 * 13 12 10 37 37 H 1.08998 * 109.47172 * 60.00248 * 13 12 10 38 38 H 0.97006 * 120.00061 * 179.97438 * 17 16 14 39 39 H 1.07993 * 119.97575 * 179.70076 * 22 6 5 40 40 H 1.07999 * 120.02495 * 180.24920 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5169 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 7 4.2082 5.4546 -1.3780 9 6 3.1888 6.2487 -2.0684 10 6 5.3504 5.1253 -2.0132 11 8 6.1941 4.4676 -1.4419 12 6 5.5787 5.5735 -3.4338 13 6 6.9416 5.0710 -3.9143 14 6 7.1701 5.5198 -5.3347 15 1 6.4184 6.1044 -5.8439 16 6 8.3387 5.1830 -5.9845 17 7 9.2540 4.4706 -5.3646 18 14 8.6223 5.7397 -7.7449 19 1 8.5927 7.2232 -7.8057 20 1 9.9451 5.2520 -8.2112 21 1 7.5549 5.1872 -8.6168 22 6 1.9211 3.6048 0.0070 23 6 1.2915 2.3751 0.0004 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0208 0.3798 0.0014 28 1 5.1345 2.5750 0.0011 29 1 4.9438 4.9379 0.5169 30 1 3.3579 5.7459 0.5169 31 1 3.3758 7.3086 -1.8963 32 1 3.2295 6.0415 -3.1378 33 1 2.2027 5.9866 -1.6848 34 1 4.7952 5.1672 -4.0734 35 1 5.5566 6.6623 -3.4793 36 1 7.7250 5.4777 -3.2747 37 1 6.9642 3.9823 -3.8687 38 1 10.0759 4.2334 -5.8218 39 1 1.3342 4.5113 0.0123 40 1 0.2129 2.3202 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290969968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:20 Heat of formation + Delta-G solvation = -55.149921 kcal Electronic energy + Delta-G solvation = -20945.202611 eV Core-core repulsion = 17725.192790 eV Total energy + Delta-G solvation = -3220.009822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.30828 -39.34363 -37.57656 -35.12044 -33.47069 -31.62932 -31.12946 -30.46662 -27.95970 -26.80707 -26.19497 -24.55945 -22.69444 -21.79578 -20.83181 -18.54022 -18.23013 -16.91773 -16.31246 -15.99487 -15.94785 -15.77715 -15.44501 -14.83876 -14.40474 -14.17379 -13.87096 -13.53879 -13.17474 -12.99194 -12.67270 -12.31955 -12.27595 -12.15448 -12.02703 -11.74959 -11.59520 -11.17717 -11.07622 -10.89075 -10.83123 -10.58526 -9.91054 -9.59304 -9.16486 -9.03046 -8.98883 -8.44047 -8.28930 -8.14226 -5.93344 -3.97642 1.31751 1.33061 3.12334 3.25520 3.33875 3.36071 3.40819 3.42745 3.87284 4.49297 4.62464 4.77910 4.86230 4.89594 4.91413 5.07192 5.19936 5.22573 5.33077 5.41413 5.45594 5.52020 5.61465 5.70804 5.78046 5.83353 6.03865 6.20972 6.25681 6.26516 6.29747 6.64286 6.74443 6.78074 6.93287 7.27857 7.76291 7.77815 7.90149 8.10374 8.41701 8.78577 9.10701 9.65592 11.17578 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022329 B = 0.003511 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.663379 B = 7973.600178 C = 8436.852925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.124 3.876 4 C -0.152 4.152 5 C -0.053 4.053 6 C -0.138 4.138 7 C 0.158 3.842 8 N -0.626 5.626 9 C 0.082 3.918 10 C 0.512 3.488 11 O -0.531 6.531 12 C -0.128 4.128 13 C 0.038 3.962 14 C -0.527 4.527 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.070 4.070 23 C -0.214 4.214 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.130 0.870 28 H 0.138 0.862 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.261 0.739 39 H 0.121 0.879 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.120 -1.999 12.528 23.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.171 4.171 5 C -0.071 4.071 6 C -0.140 4.140 7 C 0.035 3.965 8 N -0.361 5.361 9 C -0.061 4.061 10 C 0.302 3.698 11 O -0.406 6.406 12 C -0.168 4.168 13 C 0.000 4.000 14 C -0.566 4.566 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.089 4.089 23 C -0.233 4.233 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.148 0.852 28 H 0.156 0.844 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.380 -2.613 12.802 23.374 hybrid contribution -0.279 0.411 -1.066 1.176 sum -19.659 -2.202 11.736 23.001 Atomic orbital electron populations 1.23024 0.78651 1.03757 1.01243 1.86075 1.21195 1.27184 1.88832 1.19061 0.92397 0.84020 0.96615 1.20498 0.91257 0.98919 1.06406 1.21132 1.00859 0.90720 0.94437 1.20224 0.93554 0.96097 1.04088 1.20193 1.00848 0.91455 0.83973 1.48120 1.19200 1.55114 1.13683 1.21729 0.90997 0.94952 0.98427 1.21576 0.79888 0.78623 0.89673 1.90632 1.43664 1.38407 1.67937 1.21881 1.03528 1.01563 0.89797 1.18893 0.88697 0.97143 0.95230 1.21189 1.02863 1.34206 0.98305 0.92721 1.25020 0.96134 0.95194 0.98004 1.69989 1.08071 1.37717 1.37060 0.86659 0.77336 0.78963 0.85013 1.20266 1.21290 1.20263 1.20786 0.93820 0.96806 0.97465 1.21134 0.99680 0.92393 1.10052 0.92793 0.92708 0.88392 0.85196 0.84384 0.89185 0.90369 0.92831 0.90575 0.91892 0.90391 0.90359 0.95856 0.95875 0.92914 0.86076 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.78 10.50 -19.44 -0.20 -3.99 16 3 C 0.12 1.59 6.69 -39.22 -0.26 1.33 16 4 C -0.15 -2.11 9.99 -39.43 -0.39 -2.50 16 5 C -0.05 -0.77 9.69 -39.60 -0.38 -1.16 16 6 C -0.14 -1.82 5.46 -104.60 -0.57 -2.39 16 7 C 0.16 2.04 5.53 -5.20 -0.03 2.01 16 8 N -0.63 -9.26 2.86 -182.95 -0.52 -9.78 16 9 C 0.08 0.90 10.24 59.85 0.61 1.52 16 10 C 0.51 10.07 7.67 -10.99 -0.08 9.99 16 11 O -0.53 -12.34 15.08 5.55 0.08 -12.25 16 12 C -0.13 -2.66 4.19 -27.88 -0.12 -2.78 16 13 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 14 C -0.53 -15.13 9.11 -34.44 -0.31 -15.44 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -27.67 13.29 55.43 0.74 -26.94 16 18 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.07 -0.78 9.69 -39.60 -0.38 -1.16 16 23 C -0.21 -2.36 9.04 -39.43 -0.36 -2.72 16 24 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 25 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.13 1.68 8.06 -52.48 -0.42 1.25 16 28 H 0.14 2.20 7.57 -52.49 -0.40 1.81 16 29 H 0.09 1.29 7.36 -51.93 -0.38 0.91 16 30 H 0.08 0.76 8.01 -51.93 -0.42 0.35 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.86 6.44 -51.93 -0.33 0.53 16 33 H 0.06 0.54 8.07 -51.93 -0.42 0.12 16 34 H 0.08 1.51 7.40 -51.93 -0.38 1.12 16 35 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.12 1.05 6.30 -52.49 -0.33 0.72 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -34.85 338.66 -7.29 -42.14 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -5.95 Total: -1.52 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -1.51 Total: -9.58 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.21 Total: -36.72 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.12 Total: -16.24 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.85 -7.29 -42.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290969968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.009 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds