Wall clock time and date at job start Mon Mar 30 2020 01:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35903 * 116.99799 * 2 1 4 4 C 1.38729 * 120.05042 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.94076 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05750 * 0.02562 * 5 4 3 7 7 C 1.50695 * 119.94498 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47390 * 90.00144 * 7 6 5 9 9 C 1.46506 * 119.99759 * 89.99689 * 8 7 6 10 10 C 1.34771 * 120.00157 * 270.00017 * 8 7 6 11 11 O 1.21283 * 120.00062 * 0.02562 * 10 8 7 12 12 C 1.50700 * 120.00216 * 179.97438 * 10 8 7 13 13 C 1.52999 * 109.47172 * 179.97438 * 12 10 8 14 14 C 1.50706 * 109.46844 * 180.02562 * 13 12 10 15 15 H 1.07992 * 120.00404 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99867 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99793 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00291 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46877 * 59.99532 * 18 16 14 20 20 H 1.48493 * 109.47305 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46806 * 300.00152 * 18 16 14 22 22 C 1.38266 * 120.10959 * 0.25798 * 6 5 4 23 23 C 1.38154 * 120.05402 * 359.45000 * 22 6 5 24 24 H 1.08999 * 109.47208 * 300.00178 * 1 2 3 25 25 H 1.09000 * 109.46919 * 60.00087 * 1 2 3 26 26 H 1.09002 * 109.46953 * 179.97438 * 1 2 3 27 27 H 1.08007 * 120.03149 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.97105 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.47441 * 329.99864 * 7 6 5 30 30 H 1.08999 * 109.46821 * 210.00382 * 7 6 5 31 31 H 1.09001 * 109.47060 * 90.00688 * 9 8 7 32 32 H 1.09004 * 109.47073 * 210.00177 * 9 8 7 33 33 H 1.09000 * 109.47212 * 330.00260 * 9 8 7 34 34 H 1.09000 * 109.47357 * 300.00116 * 12 10 8 35 35 H 1.08998 * 109.46869 * 60.00030 * 12 10 8 36 36 H 1.09000 * 109.47535 * 299.99991 * 13 12 10 37 37 H 1.08998 * 109.47172 * 60.00248 * 13 12 10 38 38 H 0.97006 * 120.00061 * 179.97438 * 17 16 14 39 39 H 1.07993 * 119.97575 * 179.70076 * 22 6 5 40 40 H 1.07999 * 120.02495 * 180.24920 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5169 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9861 5.0185 0.0028 8 7 4.2082 5.4546 -1.3780 9 6 3.1888 6.2487 -2.0684 10 6 5.3504 5.1253 -2.0132 11 8 6.1941 4.4676 -1.4419 12 6 5.5787 5.5735 -3.4338 13 6 6.9416 5.0710 -3.9143 14 6 7.1701 5.5198 -5.3347 15 1 6.4184 6.1044 -5.8439 16 6 8.3387 5.1830 -5.9845 17 7 9.2540 4.4706 -5.3646 18 14 8.6223 5.7397 -7.7449 19 1 8.5927 7.2232 -7.8057 20 1 9.9451 5.2520 -8.2112 21 1 7.5549 5.1872 -8.6168 22 6 1.9211 3.6048 0.0070 23 6 1.2915 2.3751 0.0004 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.0208 0.3798 0.0014 28 1 5.1345 2.5750 0.0011 29 1 4.9438 4.9379 0.5169 30 1 3.3579 5.7459 0.5169 31 1 3.3758 7.3086 -1.8963 32 1 3.2295 6.0415 -3.1378 33 1 2.2027 5.9866 -1.6848 34 1 4.7952 5.1672 -4.0734 35 1 5.5566 6.6623 -3.4793 36 1 7.7250 5.4777 -3.2747 37 1 6.9642 3.9823 -3.8687 38 1 10.0759 4.2334 -5.8218 39 1 1.3342 4.5113 0.0123 40 1 0.2129 2.3202 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290969968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:19 Heat of formation + Delta-G solvation = -77.660130 kcal Electronic energy + Delta-G solvation = -20946.178727 eV Core-core repulsion = 17725.192790 eV Total energy + Delta-G solvation = -3220.985938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.30895 -40.63619 -38.58264 -36.40166 -35.58283 -33.23847 -32.14817 -31.82219 -28.80549 -27.88889 -27.70572 -26.00394 -23.66726 -23.44429 -22.08108 -19.96116 -19.12400 -18.75631 -17.56975 -17.26227 -17.07663 -16.80142 -16.62809 -16.43742 -16.02603 -15.28545 -14.78517 -14.61770 -14.52235 -14.27418 -14.15398 -13.67612 -13.51635 -13.29676 -13.13290 -12.94981 -12.78633 -12.67267 -12.59098 -12.45577 -11.96828 -11.89902 -11.73080 -11.55945 -11.31577 -10.66355 -10.55913 -9.98448 -9.62924 -9.11947 -8.17654 -6.32179 0.33538 0.37033 1.41558 1.46554 1.54261 1.74578 2.16539 2.36118 2.43652 2.85559 3.14954 3.74702 3.87423 3.94069 3.97882 4.20746 4.37098 4.38515 4.40491 4.41468 4.48927 4.53526 4.58515 4.66115 4.73499 4.78759 4.87379 4.95791 5.06545 5.12015 5.25797 5.34140 5.48162 5.62800 5.63979 5.68829 5.80523 5.85377 6.17788 6.43775 6.44605 6.86254 7.32381 7.38326 8.94892 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022329 B = 0.003511 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.663379 B = 7973.600178 C = 8436.852925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.341 6.341 3 C 0.118 3.882 4 C -0.177 4.177 5 C -0.077 4.077 6 C -0.149 4.149 7 C 0.157 3.843 8 N -0.612 5.612 9 C 0.071 3.929 10 C 0.506 3.494 11 O -0.584 6.584 12 C -0.115 4.115 13 C 0.045 3.955 14 C -0.544 4.544 15 H 0.076 0.924 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.975 3.025 19 H -0.261 1.261 20 H -0.288 1.288 21 H -0.262 1.262 22 C -0.058 4.058 23 C -0.207 4.207 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.102 0.898 36 H -0.019 1.019 37 H -0.022 1.022 38 H 0.263 0.737 39 H 0.163 0.837 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.250 0.037 11.650 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.073 3.927 4 C -0.196 4.196 5 C -0.096 4.096 6 C -0.151 4.151 7 C 0.036 3.964 8 N -0.345 5.345 9 C -0.070 4.070 10 C 0.296 3.704 11 O -0.464 6.464 12 C -0.155 4.155 13 C 0.007 3.993 14 C -0.582 4.582 15 H 0.094 0.906 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.798 3.202 19 H -0.185 1.185 20 H -0.213 1.213 21 H -0.187 1.187 22 C -0.076 4.076 23 C -0.226 4.226 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.134 0.866 27 H 0.140 0.860 28 H 0.124 0.876 29 H 0.082 0.918 30 H 0.142 0.858 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.000 1.000 37 H -0.004 1.004 38 H 0.071 0.929 39 H 0.180 0.820 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -23.592 -0.546 11.937 26.445 hybrid contribution 0.905 -0.289 -0.712 1.188 sum -22.686 -0.835 11.225 25.325 Atomic orbital electron populations 1.23370 0.76174 1.05587 1.02508 1.86053 1.23793 1.26967 1.88646 1.19168 0.91982 0.85296 0.96254 1.20521 0.92608 0.98416 1.08007 1.21008 0.99672 0.92297 0.96578 1.20271 0.94734 0.95147 1.04917 1.20365 1.00591 0.92731 0.82760 1.48071 1.18147 1.53986 1.14336 1.22097 0.91282 0.95515 0.98137 1.21364 0.81116 0.78532 0.89395 1.90623 1.45972 1.40935 1.68846 1.21624 0.99957 1.02773 0.91141 1.18664 0.91544 0.94193 0.94885 1.21691 1.03506 1.34166 0.98852 0.90603 1.26164 0.95770 0.95036 1.03531 1.70183 1.08797 1.39331 1.39518 0.85360 0.77349 0.79159 0.78300 1.18528 1.21340 1.18674 1.21165 0.92704 0.98441 0.95283 1.21529 1.01291 0.91485 1.08273 0.91122 0.91635 0.86551 0.86042 0.87618 0.91823 0.85765 0.90694 0.90848 0.88336 0.88446 0.87975 1.00022 1.00374 0.92869 0.81987 0.82309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -7.72 10.50 -92.46 -0.97 -8.69 16 3 C 0.12 2.93 6.69 22.50 0.15 3.08 16 4 C -0.18 -5.22 9.99 22.37 0.22 -5.00 16 5 C -0.08 -2.41 9.69 22.25 0.22 -2.20 16 6 C -0.15 -3.78 5.46 -19.85 -0.11 -3.89 16 7 C 0.16 3.84 5.53 85.63 0.47 4.32 16 8 N -0.61 -17.16 2.86 -851.13 -2.43 -19.60 16 9 C 0.07 1.26 10.24 127.77 1.31 2.57 16 10 C 0.51 20.42 7.67 87.66 0.67 21.09 16 11 O -0.58 -29.30 15.08 -3.04 -0.05 -29.34 16 12 C -0.12 -4.83 4.19 29.85 0.13 -4.70 16 13 C 0.04 2.57 4.26 29.85 0.13 2.70 16 14 C -0.54 -31.65 9.11 25.60 0.23 -31.41 16 15 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 16 C -0.01 -0.45 5.46 84.66 0.46 0.01 16 17 N -0.94 -60.73 13.29 21.45 0.28 -60.45 16 18 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 20 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 C -0.06 -1.06 9.69 22.26 0.22 -0.84 16 23 C -0.21 -3.89 9.04 22.37 0.20 -3.69 16 24 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 25 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 26 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 28 H 0.11 3.90 7.57 -2.91 -0.02 3.88 16 29 H 0.06 1.90 7.36 -2.39 -0.02 1.89 16 30 H 0.12 1.90 8.01 -2.39 -0.02 1.88 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.07 1.38 6.44 -2.38 -0.02 1.37 16 33 H 0.10 1.10 8.07 -2.39 -0.02 1.08 16 34 H 0.10 3.67 7.40 -2.39 -0.02 3.65 16 35 H 0.10 3.75 8.11 -2.39 -0.02 3.73 16 36 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 37 H -0.02 -1.45 8.10 -2.39 -0.02 -1.47 16 38 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 39 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.16 1.86 6.30 -2.91 -0.02 1.84 16 Total: -1.00 -82.66 338.66 5.29 -77.37 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 1.02 Total: 10.43 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 5.41 Total: -16.63 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -2.15 Total: -80.04 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -1.02 Total: -38.03 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -82.66 5.29 -77.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290969968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.293 kcal (2) G-P(sol) polarization free energy of solvation -82.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds