Wall clock time and date at job start Mon Mar 30 2020 01:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47038 * 269.98132 * 8 7 6 10 10 C 1.46502 * 119.99645 * 269.99911 * 9 8 7 11 11 C 1.34772 * 120.00586 * 90.00133 * 9 8 7 12 12 O 1.21285 * 119.99539 * 359.97438 * 11 9 8 13 13 C 1.50695 * 120.00365 * 180.02562 * 11 9 8 14 14 C 1.53005 * 109.47339 * 179.97438 * 13 11 9 15 15 C 1.50698 * 109.47144 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00139 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99691 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00377 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99618 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47112 * 60.00420 * 19 17 15 21 21 H 1.48496 * 109.46805 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47235 * 300.00141 * 19 17 15 23 23 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 24 24 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 25 25 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 27 27 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 28 28 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 29 29 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 30 30 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 31 31 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 32 32 H 1.09000 * 109.47169 * 90.00079 * 10 9 8 33 33 H 1.09005 * 109.47034 * 209.99923 * 10 9 8 34 34 H 1.09003 * 109.47383 * 329.99730 * 10 9 8 35 35 H 1.08998 * 109.47006 * 299.99500 * 13 11 9 36 36 H 1.09004 * 109.47408 * 59.99650 * 13 11 9 37 37 H 1.08998 * 109.46800 * 299.99794 * 14 13 11 38 38 H 1.09004 * 109.47020 * 59.99579 * 14 13 11 39 39 H 0.96994 * 120.00196 * 180.02562 * 18 17 15 40 40 H 1.08006 * 120.02917 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 7 6.0484 2.6242 -1.3810 10 6 6.3606 1.3702 -2.0712 11 6 6.2100 3.8016 -2.0167 12 8 5.9512 4.8396 -1.4454 13 6 6.7111 3.8282 -3.4376 14 6 6.8029 5.2776 -3.9191 15 6 7.3046 5.3042 -5.3398 16 1 7.5354 4.3799 -5.8484 17 6 7.4690 6.5087 -5.9904 18 7 7.1875 7.6343 -5.3713 19 14 8.0902 6.5416 -7.7518 20 1 7.1512 5.7891 -8.6220 21 1 8.1782 7.9483 -8.2194 22 1 9.4344 5.9137 -7.8144 23 6 3.4311 1.2849 -0.0001 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2128 2.3203 -0.0106 28 1 1.3339 4.5114 0.0011 29 1 3.7922 4.6381 0.0002 30 1 5.8756 3.5067 0.5138 31 1 5.9714 1.7293 0.5143 32 1 5.4705 1.0070 -2.5850 33 1 7.1544 1.5434 -2.7979 34 1 6.6891 0.6274 -1.3444 35 1 7.6975 3.3666 -3.4837 36 1 6.0215 3.2764 -4.0766 37 1 5.8163 5.7388 -3.8731 38 1 7.4922 5.8297 -3.2802 39 1 7.3028 8.4816 -5.8291 40 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291030318.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:21 Heat of formation + Delta-G solvation = -76.884431 kcal Electronic energy + Delta-G solvation = -20991.099497 eV Core-core repulsion = 17770.147196 eV Total energy + Delta-G solvation = -3220.952301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.32801 -40.63181 -38.54109 -36.48473 -35.58454 -33.36154 -32.37602 -31.36029 -28.61536 -28.01563 -27.83589 -26.24218 -23.65196 -23.41425 -22.04753 -20.00937 -18.84885 -18.71913 -17.59187 -17.19356 -17.04172 -16.76457 -16.67310 -16.59555 -16.40369 -15.33485 -14.85609 -14.67648 -14.45236 -14.18026 -13.97043 -13.70554 -13.52017 -13.32859 -13.14211 -12.94866 -12.76513 -12.66411 -12.57820 -12.44661 -12.00200 -11.90549 -11.79645 -11.57033 -11.31558 -10.72261 -10.55695 -9.89967 -9.65211 -9.18909 -8.17547 -6.31892 0.23361 0.44513 1.41854 1.46676 1.54338 1.71921 2.13558 2.35175 2.43703 2.83945 3.15105 3.75512 3.79444 3.87372 4.12216 4.22207 4.33429 4.37192 4.38877 4.39907 4.48501 4.51833 4.53080 4.66044 4.70769 4.74675 4.80236 4.94685 5.05202 5.11335 5.27132 5.44683 5.48167 5.60712 5.63296 5.65821 5.73188 5.85377 6.18046 6.41140 6.43505 6.86317 7.29595 7.38417 8.94987 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024621 B = 0.003432 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.978507 B = 8156.064944 C = 8289.234003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.114 3.886 4 C -0.206 4.206 5 C -0.092 4.092 6 C -0.157 4.157 7 C -0.071 4.071 8 C 0.153 3.847 9 N -0.612 5.612 10 C 0.072 3.928 11 C 0.508 3.492 12 O -0.581 6.581 13 C -0.116 4.116 14 C 0.045 3.955 15 C -0.545 4.545 16 H 0.075 0.925 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.974 3.026 20 H -0.263 1.263 21 H -0.287 1.287 22 H -0.261 1.261 23 C -0.140 4.140 24 H 0.059 0.941 25 H 0.121 0.879 26 H 0.065 0.935 27 H 0.150 0.850 28 H 0.136 0.864 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.096 0.904 37 H -0.021 1.021 38 H -0.018 1.018 39 H 0.263 0.737 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.742 -19.881 11.684 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.068 3.932 4 C -0.225 4.225 5 C -0.110 4.110 6 C -0.176 4.176 7 C -0.073 4.073 8 C 0.031 3.969 9 N -0.345 5.345 10 C -0.070 4.070 11 C 0.298 3.702 12 O -0.460 6.460 13 C -0.155 4.155 14 C 0.008 3.992 15 C -0.582 4.582 16 H 0.093 0.907 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.187 1.187 21 H -0.213 1.213 22 H -0.186 1.186 23 C -0.159 4.159 24 H 0.078 0.922 25 H 0.139 0.861 26 H 0.083 0.917 27 H 0.168 0.832 28 H 0.154 0.846 29 H 0.121 0.879 30 H 0.090 0.910 31 H 0.142 0.858 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.114 0.886 37 H -0.003 1.003 38 H 0.001 0.999 39 H 0.071 0.929 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.782 -19.383 11.966 25.202 hybrid contribution -0.118 1.092 -0.719 1.313 sum -10.900 -18.290 11.246 24.080 Atomic orbital electron populations 1.23336 0.76567 1.05623 1.02102 1.86040 1.23336 1.26319 1.88737 1.19126 0.92568 0.84690 0.96779 1.21476 1.01172 0.91765 1.08043 1.21166 0.94167 0.98258 0.97373 1.21195 0.94759 0.98424 1.03242 1.20104 0.96482 0.92418 0.98266 1.20465 0.88844 1.04556 0.83075 1.48022 1.65406 1.06914 1.14146 1.22101 1.01685 0.84373 0.98814 1.21367 0.76417 0.83059 0.89367 1.90624 1.52276 1.34339 1.68774 1.21637 1.02744 1.00178 0.90978 1.18663 0.94559 0.91145 0.94868 1.21687 1.44291 0.93406 0.98852 0.90660 1.26147 0.95628 0.95163 1.03477 1.70172 1.49758 0.98338 1.39508 0.85371 0.79409 0.77096 0.78360 1.18731 1.21304 1.18558 1.20419 0.91703 0.97967 1.05797 0.92192 0.86065 0.91678 0.83196 0.84634 0.87859 0.91042 0.85822 0.92187 0.90017 0.87833 0.87782 0.88606 1.00271 0.99913 0.92852 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.51 10.50 -92.48 -0.97 -7.48 16 3 C 0.11 2.58 6.69 22.50 0.15 2.73 16 4 C -0.21 -4.53 9.04 22.37 0.20 -4.33 16 5 C -0.09 -2.37 10.04 22.26 0.22 -2.15 16 6 C -0.16 -4.82 9.70 22.28 0.22 -4.61 16 7 C -0.07 -1.91 5.46 -19.88 -0.11 -2.02 16 8 C 0.15 3.89 5.57 85.63 0.48 4.37 16 9 N -0.61 -17.67 2.86 -851.12 -2.43 -20.10 16 10 C 0.07 1.38 10.29 127.77 1.31 2.70 16 11 C 0.51 20.53 7.67 87.66 0.67 21.21 16 12 O -0.58 -28.91 15.08 -3.05 -0.05 -28.95 16 13 C -0.12 -4.85 4.19 29.85 0.13 -4.72 16 14 C 0.05 2.59 4.26 29.85 0.13 2.71 16 15 C -0.54 -31.56 9.11 25.60 0.23 -31.32 16 16 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 17 C -0.01 -0.40 5.46 84.66 0.46 0.07 16 18 N -0.94 -60.33 13.29 21.45 0.28 -60.05 16 19 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 C -0.14 -3.20 9.64 22.36 0.22 -2.99 16 24 H 0.06 0.64 7.65 -2.39 -0.02 0.62 16 25 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.61 7.67 -2.39 -0.02 0.59 16 27 H 0.15 2.41 6.30 -2.91 -0.02 2.39 16 28 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 29 H 0.10 3.72 7.58 -2.91 -0.02 3.70 16 30 H 0.07 2.15 7.36 -2.39 -0.02 2.13 16 31 H 0.12 2.09 7.84 -2.39 -0.02 2.07 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.54 6.44 -2.38 -0.02 1.53 16 34 H 0.10 1.26 7.89 -2.39 -0.02 1.24 16 35 H 0.10 3.80 7.40 -2.39 -0.02 3.79 16 36 H 0.10 3.65 8.11 -2.38 -0.02 3.63 16 37 H -0.02 -1.37 8.10 -2.39 -0.02 -1.39 16 38 H -0.02 -1.13 8.10 -2.38 -0.02 -1.15 16 39 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 40 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -80.10 338.40 5.31 -74.79 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.02 Total: 12.07 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 5.42 Total: -17.04 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -2.15 Total: -80.15 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -1.02 Total: -36.44 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -80.10 5.31 -74.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291030318.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.094 kcal (2) G-P(sol) polarization free energy of solvation -80.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds