Wall clock time and date at job start Mon Mar 30 2020 01:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.38749 * 120.05764 * 0.24762 * 3 2 1 5 5 C 1.38124 * 119.94616 * 180.32030 * 4 3 2 6 6 C 1.38294 * 120.04986 * 359.68533 * 5 4 3 7 7 C 1.38236 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05848 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03133 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 265.00010 * 9 8 7 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00376 * 180.02562 * 11 10 9 13 13 O 1.21288 * 119.99593 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00115 * 180.02562 * 12 11 10 15 15 C 1.53005 * 109.46783 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.46609 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99745 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99517 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00491 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99744 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47158 * 60.00120 * 20 18 16 22 22 H 1.48506 * 109.46954 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46873 * 299.99710 * 20 18 16 24 24 H 1.09006 * 109.47170 * 60.00300 * 1 2 3 25 25 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47142 * 300.00353 * 1 2 3 27 27 H 1.08002 * 120.03011 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.97736 * 179.70050 * 5 4 3 29 29 H 1.08004 * 119.94098 * 180.02562 * 6 5 4 30 30 H 1.08003 * 119.97210 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47060 * 25.00065 * 9 8 7 32 32 H 1.09001 * 109.47380 * 145.00153 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 35 35 H 0.97004 * 119.99396 * 0.02562 * 11 10 9 36 36 H 1.09002 * 109.46793 * 299.99519 * 14 12 11 37 37 H 1.08992 * 109.46831 * 59.99969 * 14 12 11 38 38 H 1.08992 * 109.47457 * 299.99923 * 15 14 12 39 39 H 1.09001 * 109.46962 * 59.99990 * 15 14 12 40 40 H 0.97000 * 119.99871 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6757 -0.0068 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0222 0.0000 10 6 4.4215 -0.4776 -1.4362 11 7 5.2217 -1.7048 -1.4360 12 6 5.5005 -2.3277 -2.5982 13 8 5.0893 -1.8721 -3.6443 14 6 6.3232 -3.5904 -2.5979 15 6 6.4910 -4.0901 -4.0342 16 6 7.3142 -5.3524 -4.0339 17 1 7.6805 -5.7579 -3.1024 18 6 7.5995 -5.9896 -5.2228 19 7 7.1528 -5.4961 -6.3571 20 14 8.6193 -7.5547 -5.2224 21 1 7.9311 -8.5937 -4.4147 22 1 8.7822 -8.0397 -6.6166 23 1 9.9545 -7.2753 -4.6357 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.2128 2.3203 0.0097 28 1 1.3339 4.5113 -0.0024 29 1 3.7922 4.6381 -0.0116 30 1 5.1344 2.5752 -0.0097 31 1 5.2341 0.2273 0.4302 32 1 3.7489 -0.7402 0.5934 33 1 3.4412 -0.6828 -1.8664 34 1 4.9262 0.2847 -2.0297 35 1 5.5508 -2.0689 -0.5993 36 1 7.3033 -3.3853 -2.1673 37 1 5.8181 -4.3529 -2.0050 38 1 5.5108 -4.2952 -4.4644 39 1 6.9958 -3.3277 -4.6275 40 1 7.3539 -5.9442 -7.1936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291053611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:55 Heat of formation + Delta-G solvation = -69.686869 kcal Electronic energy + Delta-G solvation = -20358.081690 eV Core-core repulsion = 17137.441499 eV Total energy + Delta-G solvation = -3220.640191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.53055 -38.99504 -37.68005 -35.29455 -33.38586 -32.67739 -30.92210 -30.38655 -28.67042 -27.45629 -25.66802 -23.58680 -22.38813 -21.49031 -21.22290 -19.51691 -18.21603 -16.80638 -16.58182 -16.14967 -15.90677 -15.50646 -15.34012 -15.15926 -14.68578 -14.37725 -14.19590 -13.61376 -13.32081 -13.20615 -12.82943 -12.29309 -12.26018 -12.10883 -11.86676 -11.80078 -11.39242 -11.14104 -11.10991 -11.04565 -10.86697 -10.58158 -9.89019 -9.60337 -9.16884 -9.10355 -8.92613 -8.65779 -8.38438 -8.27320 -5.91670 -3.96018 1.03955 1.18644 3.02986 3.36734 3.37576 3.41432 3.42965 3.45050 3.71321 4.48852 4.52037 4.52993 4.78663 4.81158 4.87799 4.99613 5.07415 5.10192 5.22990 5.25007 5.34438 5.42924 5.53263 5.68111 5.78719 5.88579 6.05926 6.16867 6.21551 6.29306 6.31697 6.32555 6.52366 6.83914 6.96849 7.13307 7.79103 7.92603 8.00601 8.12776 8.43960 8.89117 9.12953 9.67148 11.19301 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035218 B = 0.002690 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.858457 B =10405.673223 C =10692.429331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.133 3.867 4 C -0.209 4.209 5 C -0.084 4.084 6 C -0.157 4.157 7 C -0.076 4.076 8 C -0.111 4.111 9 C -0.082 4.082 10 C 0.128 3.872 11 N -0.744 5.744 12 C 0.508 3.492 13 O -0.536 6.536 14 C -0.130 4.130 15 C 0.037 3.963 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.053 0.947 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.396 0.604 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.847 17.290 18.235 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.087 3.913 4 C -0.228 4.228 5 C -0.102 4.102 6 C -0.175 4.175 7 C -0.094 4.094 8 C -0.112 4.112 9 C -0.119 4.119 10 C 0.004 3.996 11 N -0.398 5.398 12 C 0.297 3.703 13 O -0.412 6.412 14 C -0.170 4.170 15 C -0.001 4.001 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.074 0.926 25 H 0.119 0.881 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.148 0.852 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.230 0.770 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.080 17.387 17.241 27.304 hybrid contribution 0.332 -0.763 0.354 0.905 sum -11.748 16.624 17.595 26.906 Atomic orbital electron populations 1.23075 0.78376 1.04170 1.01178 1.86120 1.21307 1.26574 1.88339 1.18887 0.91815 0.84391 0.96163 1.21228 1.00019 0.92396 1.09117 1.20934 0.94740 0.96911 0.97655 1.21051 0.93918 0.98430 1.04117 1.20953 1.00090 0.90985 0.97373 1.19086 0.90433 0.95611 1.06048 1.20605 0.99400 0.94678 0.97254 1.21162 0.96137 0.86882 0.95456 1.46197 1.56357 1.27507 1.09789 1.21547 0.79978 0.86129 0.82684 1.90667 1.52319 1.66599 1.31576 1.21857 0.98210 0.92420 1.04487 1.18893 0.97754 0.95550 0.87877 1.21201 1.33258 1.09240 0.92816 0.92658 1.25029 0.96118 0.97616 0.95661 1.69994 1.45396 1.39802 0.97713 0.86652 0.80718 0.83594 0.76947 1.20268 1.21311 1.20260 0.92581 0.88073 0.92791 0.85506 0.85912 0.85852 0.85183 0.90448 0.89994 0.91705 0.92019 0.77018 0.90294 0.90297 0.95848 0.95843 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.39 9.64 -19.42 -0.19 -3.58 16 3 C 0.13 1.44 6.66 -39.22 -0.26 1.18 16 4 C -0.21 -1.91 9.04 -39.43 -0.36 -2.26 16 5 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16 6 C -0.16 -1.33 10.04 -39.56 -0.40 -1.73 16 7 C -0.08 -0.71 9.68 -39.61 -0.38 -1.10 16 8 C -0.11 -1.19 5.15 -104.47 -0.54 -1.73 16 9 C -0.08 -0.86 5.18 -27.88 -0.14 -1.00 16 10 C 0.13 1.78 5.66 -4.04 -0.02 1.76 16 11 N -0.74 -11.17 5.56 -60.29 -0.33 -11.51 16 12 C 0.51 10.32 7.83 -10.98 -0.09 10.24 16 13 O -0.54 -13.37 15.98 5.55 0.09 -13.28 16 14 C -0.13 -2.73 5.64 -27.88 -0.16 -2.88 16 15 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 16 C -0.53 -15.25 9.11 -34.44 -0.31 -15.57 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -27.93 13.29 55.43 0.74 -27.20 16 20 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.06 0.36 7.67 -51.93 -0.40 -0.03 16 25 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.30 7.65 -51.93 -0.40 -0.10 16 27 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 28 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 30 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 31 H 0.08 0.68 8.05 -51.93 -0.42 0.26 16 32 H 0.08 0.85 7.70 -51.93 -0.40 0.45 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 4.60 8.47 -40.82 -0.35 4.25 16 36 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -36.05 341.85 -7.90 -43.95 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.06 Total: 0.01 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -2.28 Total: -10.50 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.40 Total: -38.70 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.10 Total: -16.87 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.05 -7.90 -43.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291053611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.736 kcal (2) G-P(sol) polarization free energy of solvation -36.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds