Wall clock time and date at job start Mon Mar 30 2020 01:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.38749 * 120.05764 * 0.24762 * 3 2 1 5 5 C 1.38124 * 119.94616 * 180.32030 * 4 3 2 6 6 C 1.38294 * 120.04986 * 359.68533 * 5 4 3 7 7 C 1.38236 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05848 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03133 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 265.00010 * 9 8 7 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00376 * 180.02562 * 11 10 9 13 13 O 1.21288 * 119.99593 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00115 * 180.02562 * 12 11 10 15 15 C 1.53005 * 109.46783 * 179.97438 * 14 12 11 16 16 C 1.50705 * 109.46609 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99745 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99517 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00491 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99744 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47158 * 60.00120 * 20 18 16 22 22 H 1.48506 * 109.46954 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46873 * 299.99710 * 20 18 16 24 24 H 1.09006 * 109.47170 * 60.00300 * 1 2 3 25 25 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47142 * 300.00353 * 1 2 3 27 27 H 1.08002 * 120.03011 * 0.02562 * 4 3 2 28 28 H 1.07994 * 119.97736 * 179.70050 * 5 4 3 29 29 H 1.08004 * 119.94098 * 180.02562 * 6 5 4 30 30 H 1.08003 * 119.97210 * 180.02562 * 7 6 5 31 31 H 1.09002 * 109.47060 * 25.00065 * 9 8 7 32 32 H 1.09001 * 109.47380 * 145.00153 * 9 8 7 33 33 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 34 34 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 35 35 H 0.97004 * 119.99396 * 0.02562 * 11 10 9 36 36 H 1.09002 * 109.46793 * 299.99519 * 14 12 11 37 37 H 1.08992 * 109.46831 * 59.99969 * 14 12 11 38 38 H 1.08992 * 109.47457 * 299.99923 * 15 14 12 39 39 H 1.09001 * 109.46962 * 59.99990 * 15 14 12 40 40 H 0.97000 * 119.99871 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6757 -0.0068 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0222 0.0000 10 6 4.4215 -0.4776 -1.4362 11 7 5.2217 -1.7048 -1.4360 12 6 5.5005 -2.3277 -2.5982 13 8 5.0893 -1.8721 -3.6443 14 6 6.3232 -3.5904 -2.5979 15 6 6.4910 -4.0901 -4.0342 16 6 7.3142 -5.3524 -4.0339 17 1 7.6805 -5.7579 -3.1024 18 6 7.5995 -5.9896 -5.2228 19 7 7.1528 -5.4961 -6.3571 20 14 8.6193 -7.5547 -5.2224 21 1 7.9311 -8.5937 -4.4147 22 1 8.7822 -8.0397 -6.6166 23 1 9.9545 -7.2753 -4.6357 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.2128 2.3203 0.0097 28 1 1.3339 4.5113 -0.0024 29 1 3.7922 4.6381 -0.0116 30 1 5.1344 2.5752 -0.0097 31 1 5.2341 0.2273 0.4302 32 1 3.7489 -0.7402 0.5934 33 1 3.4412 -0.6828 -1.8664 34 1 4.9262 0.2847 -2.0297 35 1 5.5508 -2.0689 -0.5993 36 1 7.3033 -3.3853 -2.1673 37 1 5.8181 -4.3529 -2.0050 38 1 5.5108 -4.2952 -4.4644 39 1 6.9958 -3.3277 -4.6275 40 1 7.3539 -5.9442 -7.1936 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291053611.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:54 Heat of formation + Delta-G solvation = -94.184272 kcal Electronic energy + Delta-G solvation = -20359.143977 eV Core-core repulsion = 17137.441499 eV Total energy + Delta-G solvation = -3221.702478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25587 -40.58066 -38.38122 -36.54476 -35.53326 -33.79409 -32.86664 -31.06027 -29.72963 -28.15043 -27.51000 -24.84798 -23.23074 -23.05092 -22.16911 -21.10217 -18.96392 -18.73667 -17.45161 -17.32667 -17.14212 -16.63595 -16.55042 -16.48773 -16.24251 -15.35767 -15.31168 -14.80196 -14.55308 -14.22615 -13.96314 -13.94821 -13.73324 -13.23017 -12.85021 -12.81580 -12.77845 -12.63202 -12.49383 -12.07755 -11.98071 -11.89396 -11.73401 -11.62677 -11.31436 -10.74228 -10.55398 -10.06529 -9.80974 -9.09767 -8.16832 -6.31295 0.34831 0.49745 1.42641 1.47672 1.55314 1.73001 2.26957 2.40077 2.46182 2.82163 3.15813 3.80066 3.86640 4.02936 4.10419 4.19159 4.21131 4.29407 4.37027 4.45327 4.50146 4.53465 4.58077 4.59469 4.71346 4.75536 4.90937 5.00196 5.10903 5.18644 5.39992 5.46820 5.52141 5.53743 5.61382 5.64318 5.86563 5.88378 6.18572 6.45860 6.64703 6.87199 7.37006 7.39354 8.95831 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035218 B = 0.002690 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.858457 B =10405.673223 C =10692.429331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.334 6.334 3 C 0.113 3.887 4 C -0.217 4.217 5 C -0.087 4.087 6 C -0.163 4.163 7 C -0.083 4.083 8 C -0.135 4.135 9 C -0.067 4.067 10 C 0.132 3.868 11 N -0.717 5.717 12 C 0.508 3.492 13 O -0.593 6.593 14 C -0.118 4.118 15 C 0.041 3.959 16 C -0.544 4.544 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.939 5.939 20 Si 0.976 3.024 21 H -0.262 1.262 22 H -0.288 1.288 23 H -0.261 1.261 24 H 0.059 0.941 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.144 0.856 28 H 0.148 0.852 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.051 0.949 35 H 0.418 0.582 36 H 0.107 0.893 37 H 0.105 0.895 38 H -0.020 1.020 39 H -0.019 1.019 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.198 17.285 20.798 29.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.248 6.248 3 C 0.067 3.933 4 C -0.236 4.236 5 C -0.105 4.105 6 C -0.181 4.181 7 C -0.101 4.101 8 C -0.136 4.136 9 C -0.104 4.104 10 C 0.008 3.992 11 N -0.370 5.370 12 C 0.297 3.703 13 O -0.474 6.474 14 C -0.158 4.158 15 C 0.004 3.996 16 C -0.582 4.582 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.799 3.201 21 H -0.187 1.187 22 H -0.214 1.214 23 H -0.186 1.186 24 H 0.078 0.922 25 H 0.129 0.871 26 H 0.089 0.911 27 H 0.161 0.839 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.118 0.882 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.255 0.745 36 H 0.125 0.875 37 H 0.123 0.877 38 H -0.001 1.001 39 H 0.000 1.000 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.432 17.391 19.895 28.791 hybrid contribution 0.047 -0.662 -0.429 0.790 sum -11.385 16.730 19.466 28.079 Atomic orbital electron populations 1.23287 0.76861 1.05191 1.02135 1.86071 1.23075 1.27099 1.88557 1.19171 0.92277 0.84931 0.96891 1.21506 1.00997 0.92258 1.08813 1.21314 0.95110 0.97572 0.96470 1.21395 0.94222 0.99139 1.03346 1.21222 1.01060 0.90869 0.96975 1.19246 0.90719 0.96065 1.07605 1.20476 1.00742 0.94792 0.94408 1.21184 0.94318 0.85775 0.97919 1.45890 1.54900 1.27132 1.09108 1.21418 0.79620 0.86078 0.83200 1.90652 1.54729 1.68045 1.33932 1.21639 1.00342 0.93411 1.00383 1.18694 0.94809 0.94724 0.91406 1.21699 1.33113 1.09511 0.93837 0.90460 1.26174 0.97463 1.01856 0.95102 1.70183 1.47148 1.41923 0.98656 0.85348 0.79163 0.78456 0.77105 1.18655 1.21364 1.18583 0.92250 0.87129 0.91146 0.83860 0.83437 0.83683 0.83734 0.88178 0.89787 0.94089 0.93098 0.74480 0.87476 0.87689 1.00127 1.00006 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.27 9.64 -92.42 -0.89 -8.16 16 3 C 0.11 2.39 6.66 22.51 0.15 2.54 16 4 C -0.22 -3.71 9.04 22.36 0.20 -3.51 16 5 C -0.09 -1.28 10.04 22.26 0.22 -1.05 16 6 C -0.16 -2.45 10.04 22.28 0.22 -2.23 16 7 C -0.08 -1.45 9.68 22.25 0.22 -1.23 16 8 C -0.14 -2.80 5.15 -19.77 -0.10 -2.90 16 9 C -0.07 -1.31 5.18 29.85 0.15 -1.16 16 10 C 0.13 3.67 5.66 86.38 0.49 4.16 16 11 N -0.72 -20.77 5.56 -463.06 -2.57 -23.35 16 12 C 0.51 20.82 7.83 87.66 0.69 21.51 16 13 O -0.59 -31.01 15.98 -3.05 -0.05 -31.06 16 14 C -0.12 -4.89 5.64 29.85 0.17 -4.72 16 15 C 0.04 2.37 4.26 29.85 0.13 2.50 16 16 C -0.54 -31.52 9.11 25.60 0.23 -31.29 16 17 H 0.08 4.04 7.74 -2.91 -0.02 4.02 16 18 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 19 N -0.94 -60.70 13.29 21.45 0.28 -60.42 16 20 Si 0.98 44.83 29.54 68.60 2.03 46.86 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 24 H 0.06 0.75 7.67 -2.38 -0.02 0.73 16 25 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.07 0.70 7.65 -2.39 -0.02 0.69 16 27 H 0.14 1.81 6.30 -2.91 -0.02 1.80 16 28 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 29 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 30 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 31 H 0.10 1.50 8.05 -2.39 -0.02 1.48 16 32 H 0.08 1.63 7.70 -2.39 -0.02 1.61 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.42 8.61 8.47 -92.71 -0.79 7.83 16 36 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 37 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 38 H -0.02 -1.28 8.10 -2.39 -0.02 -1.30 16 39 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 40 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -82.05 341.85 3.39 -78.66 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.24 Total: 13.51 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 4.35 Total: -16.05 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -2.29 Total: -83.76 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.94 Total: -39.22 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -82.05 3.39 -78.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291053611.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.524 kcal (2) G-P(sol) polarization free energy of solvation -82.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds