Wall clock time and date at job start Mon Mar 30 2020 01:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47066 * 2 1 4 4 C 1.35972 * 116.99979 * 180.02562 * 3 2 1 5 5 C 1.38740 * 119.98315 * 359.97438 * 4 3 2 6 6 C 1.38071 * 120.01088 * 179.97438 * 5 4 3 7 7 C 1.38857 * 119.98778 * 0.02562 * 6 5 4 8 8 N 1.40108 * 120.01737 * 179.97438 * 7 6 5 9 9 C 1.34776 * 119.99683 * 325.28309 * 8 7 6 10 10 O 1.21297 * 120.00307 * 4.49487 * 9 8 7 11 11 C 1.50705 * 120.00240 * 184.50068 * 9 8 7 12 12 C 1.53000 * 109.47330 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.47001 * 179.97438 * 12 11 9 14 14 H 1.08003 * 120.00019 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99885 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99929 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99891 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.46880 * 90.00548 * 17 15 13 19 19 H 1.48502 * 109.46825 * 209.99992 * 17 15 13 20 20 H 1.48499 * 109.47241 * 330.00426 * 17 15 13 21 21 C 1.38828 * 119.97361 * 359.97438 * 7 6 5 22 22 C 1.50695 * 120.01179 * 180.02562 * 21 7 6 23 23 C 1.38113 * 119.98019 * 359.74949 * 21 7 6 24 24 H 1.08993 * 109.46800 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.46761 * 300.00125 * 1 2 3 26 26 H 1.08998 * 109.47441 * 59.99932 * 1 2 3 27 27 H 1.08998 * 109.47177 * 119.99586 * 2 1 3 28 28 H 1.08997 * 109.47373 * 239.99871 * 2 1 3 29 29 H 1.08001 * 119.99783 * 0.02562 * 5 4 3 30 30 H 1.08000 * 120.00230 * 179.97438 * 6 5 4 31 31 H 0.97000 * 120.00477 * 145.28465 * 8 7 6 32 32 H 1.09001 * 109.46471 * 300.00208 * 11 9 8 33 33 H 1.09000 * 109.47134 * 59.99502 * 11 9 8 34 34 H 1.09001 * 109.46898 * 299.99606 * 12 11 9 35 35 H 1.09001 * 109.46779 * 59.99869 * 12 11 9 36 36 H 0.97001 * 120.00116 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.47308 * 90.00039 * 22 21 7 38 38 H 1.09007 * 109.47096 * 210.00217 * 22 21 7 39 39 H 1.09003 * 109.47142 * 329.99908 * 22 21 7 40 40 H 1.08000 * 119.99330 * 180.27512 * 23 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3543 1.5255 -0.0005 5 6 4.1992 0.4250 -0.0005 6 6 5.5681 0.6052 -0.0016 7 6 6.0991 1.8882 -0.0022 8 7 7.4881 2.0719 -0.0027 9 6 8.2821 1.2092 0.6620 10 8 7.8030 0.2291 1.1921 11 6 9.7653 1.4624 0.7468 12 6 10.4288 0.3423 1.5507 13 6 11.9121 0.5952 1.6349 14 1 12.3389 1.4673 1.1620 15 6 12.7243 -0.2873 2.3148 16 7 14.0186 -0.0664 2.3888 17 14 11.9861 -1.7961 3.1322 18 1 11.9817 -2.9278 2.1706 19 1 12.7964 -2.1608 4.3220 20 1 10.5935 -1.4993 3.5537 21 6 5.2532 2.9890 -0.0022 22 6 5.8287 4.3818 -0.0034 23 6 3.8841 2.8073 -0.0069 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.7860 -0.5729 -0.0005 30 1 6.2256 -0.2515 -0.0012 31 1 7.8784 2.8198 -0.4815 32 1 10.1874 1.4882 -0.2578 33 1 9.9432 2.4178 1.2403 34 1 10.0066 0.3170 2.5553 35 1 10.2509 -0.6133 1.0575 36 1 14.5901 -0.6871 2.8674 37 1 5.9667 4.7170 -1.0313 38 1 5.1452 5.0578 0.5106 39 1 6.7903 4.3781 0.5098 40 1 3.2259 3.6635 -0.0114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292427679.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:27 Heat of formation + Delta-G solvation = -85.828321 kcal Electronic energy + Delta-G solvation = -20688.383993 eV Core-core repulsion = 17467.043856 eV Total energy + Delta-G solvation = -3221.340137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.76998 -40.60207 -38.70867 -35.61228 -35.46416 -33.52473 -33.36704 -32.61178 -29.99849 -28.34133 -27.41476 -24.49020 -24.34110 -22.86672 -21.77332 -21.17859 -19.26428 -18.83667 -18.45991 -17.81395 -17.09148 -16.93678 -16.34434 -16.19830 -15.45019 -15.24789 -14.91391 -14.74009 -14.65128 -14.40350 -14.11683 -13.86621 -13.67338 -13.44264 -13.34574 -12.94678 -12.76476 -12.74135 -12.59153 -12.13147 -12.00098 -11.95331 -11.78285 -11.73110 -11.40720 -10.95697 -10.78407 -10.68624 -9.79563 -8.70869 -8.31892 -6.34681 0.24851 0.33612 1.32456 1.34844 1.49327 1.60402 2.09126 2.26477 2.34242 2.72949 3.03956 3.74156 3.83266 3.92908 4.03884 4.09003 4.16335 4.30372 4.34641 4.36502 4.45284 4.48683 4.62700 4.77732 4.83908 4.92200 4.93647 4.98489 5.04617 5.20396 5.24705 5.32845 5.36478 5.40833 5.43181 5.48605 5.60419 5.83718 6.22682 6.42948 6.46813 6.72018 7.18823 7.30720 8.83676 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026608 B = 0.003372 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.047454 B = 8301.978877 C = 9213.348442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.327 6.327 4 C 0.110 3.890 5 C -0.202 4.202 6 C -0.100 4.100 7 C 0.092 3.908 8 N -0.658 5.658 9 C 0.514 3.486 10 O -0.565 6.565 11 C -0.113 4.113 12 C 0.005 3.995 13 C -0.528 4.528 14 H 0.053 0.947 15 C 0.014 3.986 16 N -0.943 5.943 17 Si 0.937 3.063 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.262 1.262 21 C -0.068 4.068 22 C -0.115 4.115 23 C -0.141 4.141 24 H 0.097 0.903 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.139 0.861 30 H 0.120 0.880 31 H 0.426 0.574 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.010 0.990 35 H 0.010 0.990 36 H 0.267 0.733 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.504 6.557 -8.029 28.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.241 6.241 4 C 0.064 3.936 5 C -0.222 4.222 6 C -0.120 4.120 7 C -0.002 4.002 8 N -0.305 5.305 9 C 0.304 3.696 10 O -0.443 6.443 11 C -0.153 4.153 12 C -0.033 4.033 13 C -0.566 4.566 14 H 0.071 0.929 15 C -0.184 4.184 16 N -0.584 5.584 17 Si 0.762 3.238 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.186 1.186 21 C -0.070 4.070 22 C -0.172 4.172 23 C -0.160 4.160 24 H 0.116 0.884 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.157 0.843 30 H 0.137 0.863 31 H 0.265 0.735 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.076 0.924 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -26.774 5.947 -7.569 28.451 hybrid contribution 0.607 -0.967 0.326 1.187 sum -26.167 4.980 -7.243 27.604 Atomic orbital electron populations 1.21791 0.91067 1.04128 1.03386 1.23038 0.97140 0.81026 1.01908 1.86045 1.18385 1.30869 1.88824 1.19074 0.82627 0.94250 0.97671 1.21228 0.93163 0.99094 1.08673 1.21101 0.95172 0.96903 0.98838 1.17742 0.83345 0.93646 1.05498 1.43434 1.04055 1.31025 1.51991 1.21477 0.90203 0.81796 0.76160 1.90637 1.76777 1.29643 1.47246 1.21516 0.87931 1.02010 1.03845 1.19232 0.93739 0.94794 0.95583 1.21421 0.91952 1.09577 1.33649 0.92910 1.25790 0.95032 1.00960 0.96629 1.70019 1.05104 1.38927 1.44310 0.85846 0.79079 0.80144 0.78729 1.19385 1.20459 1.18646 1.19783 0.91994 0.95730 0.99488 1.20860 1.01724 0.90443 1.04127 1.20352 0.94064 0.95306 1.06311 0.88436 0.91741 0.91426 0.91959 0.91383 0.84282 0.86253 0.73452 0.87315 0.87367 0.97186 0.97182 0.92388 0.88687 0.89441 0.91148 0.82881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 71.98 0.74 -0.83 16 2 C 0.04 0.68 5.46 71.98 0.39 1.07 16 3 O -0.33 -7.04 10.14 -93.23 -0.95 -7.98 16 4 C 0.11 2.62 6.69 22.50 0.15 2.77 16 5 C -0.20 -5.23 9.03 22.35 0.20 -5.03 16 6 C -0.10 -3.04 8.70 22.38 0.19 -2.84 16 7 C 0.09 2.51 6.29 38.11 0.24 2.75 16 8 N -0.66 -17.28 4.75 -303.39 -1.44 -18.72 16 9 C 0.51 18.00 7.68 87.66 0.67 18.67 16 10 O -0.56 -24.50 13.40 -3.08 -0.04 -24.54 16 11 C -0.11 -4.12 5.64 29.85 0.17 -3.95 16 12 C 0.00 0.22 3.33 29.85 0.10 0.32 16 13 C -0.53 -30.06 9.66 25.60 0.25 -29.81 16 14 H 0.05 3.14 7.99 -2.91 -0.02 3.12 16 15 C 0.01 0.81 5.47 84.65 0.46 1.27 16 16 N -0.94 -58.77 13.96 21.45 0.30 -58.47 16 17 Si 0.94 46.62 27.47 68.60 1.88 48.50 16 18 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 20 H -0.26 -12.98 6.54 99.48 0.65 -12.33 16 21 C -0.07 -1.46 5.89 -19.75 -0.12 -1.58 16 22 C -0.12 -1.64 9.47 71.23 0.67 -0.96 16 23 C -0.14 -3.03 9.64 22.35 0.22 -2.82 16 24 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.96 7.66 -2.39 -0.02 0.94 16 28 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 29 H 0.14 3.07 6.29 -2.91 -0.02 3.05 16 30 H 0.12 4.20 6.20 -2.91 -0.02 4.18 16 31 H 0.43 7.88 7.85 -92.71 -0.73 7.16 16 32 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 33 H 0.11 3.52 8.14 -2.39 -0.02 3.51 16 34 H 0.01 0.50 7.16 -2.39 -0.02 0.49 16 35 H 0.01 0.50 7.53 -2.39 -0.02 0.48 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 1.01 8.09 -2.38 -0.02 0.99 16 39 H 0.07 1.03 7.16 -2.39 -0.02 1.01 16 40 H 0.15 2.55 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -74.08 332.48 4.36 -69.72 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.26 Total: 12.46 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 4.34 Total: -20.97 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -1.14 Total: -77.19 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.99 Total: -32.52 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.88 Total: 48.50 kcal Total: -74.08 4.36 -69.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292427679.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.110 kcal (2) G-P(sol) polarization free energy of solvation -74.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds