Wall clock time and date at job start Mon Mar 30 2020 01:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47006 * 2 1 4 4 C 1.35899 * 116.99930 * 180.02562 * 3 2 1 5 5 C 1.38747 * 120.05586 * 359.97438 * 4 3 2 6 6 C 1.38125 * 119.94590 * 180.02562 * 5 4 3 7 7 C 1.38289 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11362 * 0.02562 * 7 6 5 9 9 C 1.38163 * 120.05438 * 359.97438 * 8 7 6 10 10 C 1.50708 * 120.02715 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.47357 * 260.02510 * 10 9 8 12 12 C 1.34772 * 120.00011 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99956 * 0.02562 * 12 11 10 14 14 C 1.50702 * 119.99906 * 179.97438 * 12 11 10 15 15 C 1.53004 * 109.46998 * 179.97438 * 14 12 11 16 16 C 1.50702 * 109.46998 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00119 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00228 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99649 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00445 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46906 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47163 * 119.99902 * 20 18 16 23 23 H 1.48491 * 109.47425 * 240.00117 * 20 18 16 24 24 H 1.08993 * 109.47487 * 299.99875 * 1 2 3 25 25 H 1.09003 * 109.46669 * 60.00618 * 1 2 3 26 26 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47474 * 239.99645 * 2 1 3 28 28 H 1.08995 * 109.46823 * 119.99665 * 2 1 3 29 29 H 1.08000 * 120.03046 * 0.02562 * 5 4 3 30 30 H 1.07993 * 119.97844 * 179.72247 * 6 5 4 31 31 H 1.08004 * 119.94567 * 179.97438 * 7 6 5 32 32 H 1.08001 * 119.97538 * 179.97438 * 8 7 6 33 33 H 1.09002 * 109.47162 * 20.02710 * 10 9 8 34 34 H 1.09005 * 109.46612 * 140.02285 * 10 9 8 35 35 H 0.97001 * 119.99694 * 359.97438 * 11 10 9 36 36 H 1.09002 * 109.47259 * 300.00107 * 14 12 11 37 37 H 1.08998 * 109.46926 * 59.99805 * 14 12 11 38 38 H 1.08995 * 109.47052 * 300.00352 * 15 14 12 39 39 H 1.08999 * 109.46742 * 60.00422 * 15 14 12 40 40 H 0.97001 * 119.99611 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4259 -0.0005 6 6 5.5689 0.6095 -0.0005 7 6 6.0961 1.8879 -0.0011 8 6 5.2551 2.9851 -0.0011 9 6 3.8850 2.8066 -0.0011 10 6 2.9687 4.0031 -0.0005 11 7 2.4819 4.2448 1.3599 12 6 1.6420 5.2705 1.6028 13 8 1.2888 5.9930 0.6950 14 6 1.1407 5.5187 3.0022 15 6 0.2105 6.7335 3.0027 16 6 -0.2902 6.9822 4.4022 17 1 0.0240 6.3384 5.2105 18 6 -1.1493 8.0314 4.6507 19 7 -1.5323 8.8151 3.6663 20 14 -1.7706 8.3393 6.3853 21 1 -1.1961 7.3240 7.3043 22 1 -1.3566 9.6956 6.8259 23 1 -3.2522 8.2432 6.4048 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7886 -0.5727 -0.0005 30 1 6.2281 -0.2459 0.0040 31 1 7.1668 2.0295 -0.0007 32 1 5.6692 3.9825 -0.0012 33 1 3.5143 4.8788 -0.3522 34 1 2.1225 3.8130 -0.6609 35 1 2.7635 3.6662 2.0857 36 1 0.5953 4.6428 3.3535 37 1 1.9867 5.7090 3.6626 38 1 0.7563 7.6092 2.6515 39 1 -0.6354 6.5436 2.3421 40 1 -2.1364 9.5535 3.8413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292430838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:30 Heat of formation + Delta-G solvation = -68.833433 kcal Electronic energy + Delta-G solvation = -20732.722817 eV Core-core repulsion = 17512.119633 eV Total energy + Delta-G solvation = -3220.603183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.56071 -38.89240 -37.75169 -34.68554 -33.37221 -32.18321 -31.48571 -30.71745 -29.75739 -26.62458 -24.95728 -24.28481 -22.03287 -21.67752 -21.14322 -19.54663 -18.37924 -16.88169 -16.37221 -16.30751 -16.06762 -15.46721 -15.21378 -14.85600 -14.59504 -14.36499 -13.82417 -13.56683 -13.18726 -12.95442 -12.83478 -12.77338 -12.23860 -12.10467 -11.96371 -11.89900 -11.53563 -11.09169 -11.00443 -10.95705 -10.90440 -10.53820 -9.88631 -9.59644 -9.35904 -9.06148 -8.87846 -8.62630 -8.36273 -8.27095 -5.91366 -3.95340 1.00063 1.19006 2.96100 3.35550 3.38282 3.39877 3.42628 3.46164 3.96064 4.45235 4.52007 4.54114 4.65609 4.73283 4.81353 4.94569 5.02728 5.08426 5.26496 5.43471 5.47538 5.56054 5.56824 5.58986 5.76967 5.86580 6.01606 6.08026 6.20617 6.29327 6.33540 6.34409 6.54309 6.85294 6.98360 7.18816 7.80559 7.93807 8.04192 8.13534 8.44930 8.91397 9.14026 9.67837 11.19663 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021928 B = 0.003369 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.587597 B = 8307.898813 C = 8903.289005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.055 3.945 3 O -0.305 6.305 4 C 0.147 3.853 5 C -0.214 4.214 6 C -0.077 4.077 7 C -0.162 4.162 8 C -0.063 4.063 9 C -0.136 4.136 10 C 0.171 3.829 11 N -0.735 5.735 12 C 0.510 3.490 13 O -0.537 6.537 14 C -0.129 4.129 15 C 0.037 3.963 16 C -0.525 4.525 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.132 0.868 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.396 0.604 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.023 0.977 39 H 0.023 0.977 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.611 -21.364 -8.059 26.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 O -0.218 6.218 4 C 0.101 3.899 5 C -0.233 4.233 6 C -0.095 4.095 7 C -0.180 4.180 8 C -0.081 4.081 9 C -0.137 4.137 10 C 0.047 3.953 11 N -0.389 5.389 12 C 0.298 3.702 13 O -0.413 6.413 14 C -0.169 4.169 15 C -0.001 4.001 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.089 0.911 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.229 0.771 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.048 -20.520 -8.775 25.852 hybrid contribution -0.065 -0.450 1.231 1.312 sum 12.983 -20.970 -7.544 25.792 Atomic orbital electron populations 1.21784 0.92459 1.02760 1.04111 1.22805 0.96219 0.81867 1.01106 1.86196 1.18502 1.29181 1.87915 1.18876 0.82675 0.93436 0.94937 1.21236 0.94422 0.97950 1.09657 1.20962 0.94277 0.97368 0.96877 1.21055 0.99931 0.92377 1.04632 1.21004 0.91551 0.99517 0.96071 1.19371 0.94253 0.92250 1.07817 1.19887 0.96089 0.93614 0.85690 1.46198 1.50161 1.33100 1.09433 1.21524 0.77074 0.78885 0.92678 1.90661 1.56915 1.46732 1.46992 1.21850 1.01277 1.03186 0.90590 1.18901 0.93705 0.90738 0.96749 1.21277 1.27827 1.13157 0.94057 0.92590 1.25032 0.96417 0.96112 0.96904 1.70018 1.34225 1.17561 1.31069 0.86540 0.78574 0.78038 0.84838 1.19771 1.21048 1.21053 0.91092 0.91383 0.90441 0.92209 0.92053 0.85486 0.85858 0.85770 0.85035 0.91181 0.90817 0.77081 0.90376 0.90378 0.95821 0.95814 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.16 0.38 -0.85 16 2 C 0.06 0.46 5.46 37.16 0.20 0.67 16 3 O -0.30 -3.65 9.37 -19.42 -0.18 -3.83 16 4 C 0.15 1.67 6.66 -39.22 -0.26 1.41 16 5 C -0.21 -1.96 9.04 -39.43 -0.36 -2.32 16 6 C -0.08 -0.63 10.04 -39.60 -0.40 -1.03 16 7 C -0.16 -1.38 10.04 -39.56 -0.40 -1.78 16 8 C -0.06 -0.63 9.67 -39.61 -0.38 -1.01 16 9 C -0.14 -1.60 5.26 -104.47 -0.55 -2.15 16 10 C 0.17 2.45 5.46 -5.19 -0.03 2.42 16 11 N -0.74 -11.56 5.55 -61.47 -0.34 -11.90 16 12 C 0.51 10.45 7.83 -10.99 -0.09 10.37 16 13 O -0.54 -13.33 15.98 5.56 0.09 -13.24 16 14 C -0.13 -2.75 5.64 -27.88 -0.16 -2.91 16 15 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 16 C -0.52 -15.23 9.11 -34.44 -0.31 -15.54 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.90 13.29 55.43 0.74 -27.17 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 24 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 29 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 30 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 32 H 0.13 1.14 8.04 -52.49 -0.42 0.72 16 33 H 0.07 1.01 8.00 -51.93 -0.42 0.59 16 34 H 0.07 1.18 7.85 -51.93 -0.41 0.77 16 35 H 0.40 5.31 8.46 -40.82 -0.35 4.96 16 36 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 40 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -35.28 342.32 -8.18 -43.46 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.06 Total: 0.78 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -2.56 Total: -10.24 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.40 Total: -39.06 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.09 Total: -17.07 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.28 -8.18 -43.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292430838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.376 kcal (2) G-P(sol) polarization free energy of solvation -35.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds