Wall clock time and date at job start Mon Mar 30 2020 01:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00178 * 2 1 4 4 N 1.46901 * 109.47198 * 125.79283 * 3 2 1 5 5 C 1.46899 * 111.00039 * 300.67355 * 4 3 2 6 6 C 1.50707 * 109.46745 * 288.37335 * 5 4 3 7 7 H 1.07994 * 120.00260 * 4.87523 * 6 5 4 8 8 C 1.37875 * 119.99535 * 184.88137 * 6 5 4 9 9 N 1.31516 * 119.99871 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00375 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47308 * 89.99887 * 10 8 6 12 12 H 1.48498 * 109.47346 * 210.00180 * 10 8 6 13 13 H 1.48502 * 109.47033 * 329.99976 * 10 8 6 14 14 C 1.46897 * 110.99740 * 64.62672 * 4 3 2 15 15 C 1.50699 * 109.47563 * 71.15473 * 14 4 3 16 16 C 1.38150 * 120.00205 * 256.73622 * 15 14 4 17 17 C 1.38675 * 120.00240 * 179.76680 * 16 15 14 18 18 O 1.35981 * 120.00393 * 180.25139 * 17 16 15 19 19 C 1.42900 * 117.00288 * 180.27750 * 18 17 16 20 20 C 1.38723 * 119.99687 * 0.52591 * 17 16 15 21 21 C 1.38101 * 119.99893 * 359.72951 * 20 17 16 22 22 C 1.38678 * 119.99730 * 77.00645 * 15 14 4 23 23 O 1.35976 * 120.00189 * 359.97438 * 22 15 14 24 24 H 1.08006 * 120.00475 * 180.02562 * 1 2 3 25 25 H 1.08006 * 120.00178 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99863 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47040 * 5.79070 * 3 2 1 28 28 H 1.09003 * 109.47403 * 245.79580 * 3 2 1 29 29 H 1.08994 * 109.47271 * 48.36640 * 5 4 3 30 30 H 1.08997 * 109.47225 * 168.37294 * 5 4 3 31 31 H 0.96997 * 119.99855 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47349 * 191.15883 * 14 4 3 33 33 H 1.08999 * 109.47367 * 311.15414 * 14 4 3 34 34 H 1.08002 * 119.99943 * 0.02562 * 16 15 14 35 35 H 1.08996 * 109.47069 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.46589 * 299.99841 * 19 18 17 37 37 H 1.08992 * 109.47405 * 59.99408 * 19 18 17 38 38 H 1.08002 * 120.00120 * 179.70124 * 20 17 16 39 39 H 1.08000 * 119.99862 * 179.97438 * 21 20 17 40 40 H 0.96701 * 114.00386 * 95.01823 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0098 1.3241 1.1234 5 6 2.3087 1.1699 2.4050 6 6 1.5456 2.4320 2.7151 7 1 1.5137 3.2348 1.9935 8 6 0.8883 2.5616 3.9201 9 7 0.2227 3.6631 4.1910 10 14 0.9430 1.1727 5.1681 11 1 2.1096 1.3609 6.0674 12 1 -0.3065 1.1786 5.9705 13 1 1.0694 -0.1257 4.4585 14 6 4.0415 0.2912 0.9601 15 6 4.9738 0.6844 -0.1567 16 6 4.8662 0.0766 -1.3926 17 6 5.7209 0.4419 -2.4218 18 8 5.6116 -0.1527 -3.6398 19 6 6.5287 0.2680 -4.6518 20 6 6.6911 1.4098 -2.2070 21 6 6.8022 2.0136 -0.9699 22 6 5.9434 1.6523 0.0579 23 8 6.0527 2.2470 1.2759 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3598 2.1309 0.1037 28 1 2.6101 1.4091 -0.9373 29 1 1.6145 0.3321 2.3409 30 1 3.0346 0.9806 3.1958 31 1 -0.2394 3.7544 5.0389 32 1 4.6064 0.1921 1.8871 33 1 3.5679 -0.6607 0.7199 34 1 4.1136 -0.6800 -1.5586 35 1 6.3328 -0.2832 -5.5715 36 1 6.4035 1.3353 -4.8345 37 1 7.5489 0.0732 -4.3213 38 1 7.3600 1.6908 -3.0070 39 1 7.5578 2.7668 -0.8026 40 1 6.7096 1.8380 1.8558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292718663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:37 Heat of formation + Delta-G solvation = -18.460199 kcal Electronic energy + Delta-G solvation = -21677.349710 eV Core-core repulsion = 18458.930874 eV Total energy + Delta-G solvation = -3218.418836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.31524 -38.58357 -37.20078 -35.59083 -32.75987 -32.54674 -31.12881 -29.49721 -27.64405 -27.12618 -26.13158 -23.63885 -22.52834 -21.08862 -20.71247 -18.87031 -18.04070 -17.57681 -16.62002 -16.55589 -15.85110 -15.29482 -14.99310 -14.72892 -14.42165 -14.05103 -13.86729 -13.77479 -13.27494 -12.81648 -12.67244 -12.40442 -12.25396 -12.00541 -11.53732 -11.38105 -11.31138 -11.00686 -10.82516 -10.70918 -10.45285 -10.39946 -10.13727 -9.79470 -9.24471 -8.89856 -8.69491 -8.47234 -7.91034 -7.25416 -5.96424 -3.91670 1.33344 1.43062 2.83900 3.19705 3.33062 3.40301 3.42421 3.68617 4.48843 4.49188 4.75086 4.85013 4.96076 4.97533 5.04743 5.19758 5.27801 5.36722 5.46429 5.49340 5.59062 5.71590 5.82144 5.98401 6.05109 6.15568 6.25990 6.31684 6.39383 6.59548 6.67933 6.76360 6.88350 7.06693 7.14428 7.32133 7.32690 7.69097 7.97537 8.03412 8.10864 8.75373 9.13719 9.65840 11.17179 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.004847 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.422442 B = 5775.825547 C = 6462.052133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.183 4.183 3 C 0.087 3.913 4 N -0.504 5.504 5 C 0.163 3.837 6 C -0.497 4.497 7 H 0.079 0.921 8 C 0.068 3.932 9 N -0.903 5.903 10 Si 0.872 3.128 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.269 1.269 14 C 0.092 3.908 15 C -0.051 4.051 16 C -0.131 4.131 17 C 0.111 3.889 18 O -0.319 6.319 19 C 0.029 3.971 20 C -0.198 4.198 21 C -0.115 4.115 22 C 0.098 3.902 23 O -0.475 6.475 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.065 0.935 29 H -0.005 1.005 30 H 0.021 0.979 31 H 0.262 0.738 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.130 0.870 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.611 -8.822 -13.806 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.203 4.203 3 C -0.041 4.041 4 N -0.225 5.225 5 C 0.037 3.963 6 C -0.535 4.535 7 H 0.097 0.903 8 C -0.133 4.133 9 N -0.543 5.543 10 Si 0.700 3.300 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.194 1.194 14 C -0.037 4.037 15 C -0.052 4.052 16 C -0.151 4.151 17 C 0.066 3.934 18 O -0.233 6.233 19 C -0.066 4.066 20 C -0.217 4.217 21 C -0.134 4.134 22 C 0.052 3.948 23 O -0.283 6.283 24 H 0.103 0.897 25 H 0.118 0.882 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.083 0.917 29 H 0.013 0.987 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.148 0.852 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 13.165 -8.029 -13.910 20.767 hybrid contribution 0.157 -1.584 0.883 1.821 sum 13.322 -9.613 -13.027 20.966 Atomic orbital electron populations 1.23757 0.96042 1.01322 1.00735 1.23582 0.96767 0.99831 1.00116 1.21307 0.94435 0.94445 0.93866 1.62229 1.12772 1.44257 1.03277 1.20204 0.92724 0.97424 0.85920 1.20984 1.28994 1.00887 1.02681 0.90294 1.24860 0.95282 0.95338 0.97823 1.69895 1.34242 1.26162 1.23954 0.86905 0.77570 0.83497 0.82030 1.20274 1.21359 1.19374 1.20945 0.93263 0.93743 0.95700 1.20081 0.96301 0.93994 0.94811 1.20216 1.00683 1.03350 0.90824 1.18916 0.95620 0.93581 0.85256 1.86078 1.56300 1.62044 1.18883 1.23006 0.92719 1.00710 0.90209 1.20995 1.01484 1.00588 0.98648 1.21228 0.99376 0.99876 0.92873 1.18163 0.95814 0.94044 0.86778 1.85074 1.63145 1.56325 1.23725 0.89657 0.88165 0.88651 0.89374 0.91710 0.98739 0.96142 0.92833 0.90359 0.94496 0.85220 0.88496 0.92732 0.92874 0.85595 0.85421 0.76749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 14.32 29.02 0.42 -2.72 16 2 C -0.18 -3.27 7.43 -36.03 -0.27 -3.54 16 3 C 0.09 1.73 5.52 -4.98 -0.03 1.70 16 4 N -0.50 -10.71 4.61 -238.97 -1.10 -11.81 16 5 C 0.16 3.99 3.65 -4.97 -0.02 3.98 16 6 C -0.50 -14.34 9.23 -34.44 -0.32 -14.66 16 7 H 0.08 2.51 7.56 -52.49 -0.40 2.11 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 9 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 10 Si 0.87 21.86 27.37 -169.99 -4.65 17.21 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 13 H -0.27 -6.50 6.68 56.52 0.38 -6.13 16 14 C 0.09 1.59 4.61 -4.98 -0.02 1.57 16 15 C -0.05 -0.79 4.69 -104.49 -0.49 -1.28 16 16 C -0.13 -1.89 8.86 -39.45 -0.35 -2.24 16 17 C 0.11 1.47 6.69 -39.24 -0.26 1.21 16 18 O -0.32 -3.88 10.50 -19.68 -0.21 -4.09 16 19 C 0.03 0.22 9.81 101.05 0.99 1.21 16 20 C -0.20 -2.37 9.03 -39.45 -0.36 -2.73 16 21 C -0.11 -1.48 9.98 -39.45 -0.39 -1.88 16 22 C 0.10 1.48 6.68 -39.24 -0.26 1.22 16 23 O -0.47 -7.44 12.79 -19.66 -0.25 -7.69 16 24 H 0.09 1.29 8.06 -52.48 -0.42 0.87 16 25 H 0.10 1.81 7.84 -52.48 -0.41 1.40 16 26 H 0.10 1.56 6.70 -52.48 -0.35 1.21 16 27 H 0.09 1.95 6.83 -51.93 -0.35 1.60 16 28 H 0.06 1.20 6.75 -51.93 -0.35 0.85 16 29 H -0.01 -0.12 6.09 -51.93 -0.32 -0.44 16 30 H 0.02 0.50 6.91 -51.93 -0.36 0.15 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 32 H 0.08 1.32 7.55 -51.93 -0.39 0.93 16 33 H 0.04 0.60 6.02 -51.93 -0.31 0.29 16 34 H 0.13 1.78 8.01 -52.49 -0.42 1.36 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 37 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 38 H 0.13 1.16 6.29 -52.49 -0.33 0.83 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.38 3.94 9.06 45.56 0.41 4.35 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -33.73 329.60 -6.74 -40.47 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.80 Total: 4.55 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -1.46 Total: -16.27 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.33 Total: -39.14 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.46 Total: -11.78 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.65 Total: 17.21 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.73 -6.74 -40.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292718663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.011 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds