Wall clock time and date at job start Mon Mar 30 2020 01:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 120.00178 * 2 1 4 4 N 1.46901 * 109.47198 * 125.79283 * 3 2 1 5 5 C 1.46899 * 111.00039 * 300.67355 * 4 3 2 6 6 C 1.50707 * 109.46745 * 288.37335 * 5 4 3 7 7 H 1.07994 * 120.00260 * 4.87523 * 6 5 4 8 8 C 1.37875 * 119.99535 * 184.88137 * 6 5 4 9 9 N 1.31516 * 119.99871 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00375 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47308 * 89.99887 * 10 8 6 12 12 H 1.48498 * 109.47346 * 210.00180 * 10 8 6 13 13 H 1.48502 * 109.47033 * 329.99976 * 10 8 6 14 14 C 1.46897 * 110.99740 * 64.62672 * 4 3 2 15 15 C 1.50699 * 109.47563 * 71.15473 * 14 4 3 16 16 C 1.38150 * 120.00205 * 256.73622 * 15 14 4 17 17 C 1.38675 * 120.00240 * 179.76680 * 16 15 14 18 18 O 1.35981 * 120.00393 * 180.25139 * 17 16 15 19 19 C 1.42900 * 117.00288 * 180.27750 * 18 17 16 20 20 C 1.38723 * 119.99687 * 0.52591 * 17 16 15 21 21 C 1.38101 * 119.99893 * 359.72951 * 20 17 16 22 22 C 1.38678 * 119.99730 * 77.00645 * 15 14 4 23 23 O 1.35976 * 120.00189 * 359.97438 * 22 15 14 24 24 H 1.08006 * 120.00475 * 180.02562 * 1 2 3 25 25 H 1.08006 * 120.00178 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99863 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47040 * 5.79070 * 3 2 1 28 28 H 1.09003 * 109.47403 * 245.79580 * 3 2 1 29 29 H 1.08994 * 109.47271 * 48.36640 * 5 4 3 30 30 H 1.08997 * 109.47225 * 168.37294 * 5 4 3 31 31 H 0.96997 * 119.99855 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47349 * 191.15883 * 14 4 3 33 33 H 1.08999 * 109.47367 * 311.15414 * 14 4 3 34 34 H 1.08002 * 119.99943 * 0.02562 * 16 15 14 35 35 H 1.08996 * 109.47069 * 180.02562 * 19 18 17 36 36 H 1.09004 * 109.46589 * 299.99841 * 19 18 17 37 37 H 1.08992 * 109.47405 * 59.99408 * 19 18 17 38 38 H 1.08002 * 120.00120 * 179.70124 * 20 17 16 39 39 H 1.08000 * 119.99862 * 179.97438 * 21 20 17 40 40 H 0.96701 * 114.00386 * 95.01823 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0098 1.3241 1.1234 5 6 2.3087 1.1699 2.4050 6 6 1.5456 2.4320 2.7151 7 1 1.5137 3.2348 1.9935 8 6 0.8883 2.5616 3.9201 9 7 0.2227 3.6631 4.1910 10 14 0.9430 1.1727 5.1681 11 1 2.1096 1.3609 6.0674 12 1 -0.3065 1.1786 5.9705 13 1 1.0694 -0.1257 4.4585 14 6 4.0415 0.2912 0.9601 15 6 4.9738 0.6844 -0.1567 16 6 4.8662 0.0766 -1.3926 17 6 5.7209 0.4419 -2.4218 18 8 5.6116 -0.1527 -3.6398 19 6 6.5287 0.2680 -4.6518 20 6 6.6911 1.4098 -2.2070 21 6 6.8022 2.0136 -0.9699 22 6 5.9434 1.6523 0.0579 23 8 6.0527 2.2470 1.2759 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9354 -0.0004 27 1 1.3598 2.1309 0.1037 28 1 2.6101 1.4091 -0.9373 29 1 1.6145 0.3321 2.3409 30 1 3.0346 0.9806 3.1958 31 1 -0.2394 3.7544 5.0389 32 1 4.6064 0.1921 1.8871 33 1 3.5679 -0.6607 0.7199 34 1 4.1136 -0.6800 -1.5586 35 1 6.3328 -0.2832 -5.5715 36 1 6.4035 1.3353 -4.8345 37 1 7.5489 0.0732 -4.3213 38 1 7.3600 1.6908 -3.0070 39 1 7.5578 2.7668 -0.8026 40 1 6.7096 1.8380 1.8558 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292718663.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:36 Heat of formation + Delta-G solvation = -43.692138 kcal Electronic energy + Delta-G solvation = -21678.443849 eV Core-core repulsion = 18458.930874 eV Total energy + Delta-G solvation = -3219.512975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33021 -39.66609 -38.65911 -36.66194 -34.78022 -34.02136 -32.51485 -30.59672 -29.44469 -27.90788 -27.48567 -25.33555 -23.57432 -22.65414 -22.05753 -20.33696 -19.14161 -18.85453 -18.47390 -17.59045 -16.89727 -16.60554 -16.25206 -16.13938 -16.03928 -15.50031 -15.26480 -14.91688 -14.57488 -14.37728 -14.05518 -13.66434 -13.33102 -13.25152 -13.11016 -12.87832 -12.59665 -12.37894 -12.25263 -12.16281 -12.13264 -11.83667 -11.68799 -11.46430 -11.14891 -10.73445 -10.26048 -9.85957 -8.92323 -8.88519 -8.23061 -6.24397 0.28678 0.40317 1.35767 1.37056 1.42107 1.48278 2.37799 2.38735 2.64136 3.10593 3.46201 3.49961 3.82631 3.85991 4.05478 4.11734 4.25207 4.33998 4.44461 4.45585 4.47895 4.55118 4.64745 4.75892 4.79732 4.91342 4.96290 5.03012 5.03582 5.18323 5.24402 5.32447 5.56179 5.62295 5.68479 5.71136 5.85818 6.08570 6.42533 6.45987 6.71053 6.80245 7.07075 7.37727 8.94313 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.004847 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.422442 B = 5775.825547 C = 6462.052133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.189 4.189 3 C 0.094 3.906 4 N -0.523 5.523 5 C 0.177 3.823 6 C -0.503 4.503 7 H 0.030 0.970 8 C 0.007 3.993 9 N -0.952 5.952 10 Si 0.946 3.054 11 H -0.265 1.265 12 H -0.284 1.284 13 H -0.250 1.250 14 C 0.096 3.904 15 C -0.069 4.069 16 C -0.140 4.140 17 C 0.107 3.893 18 O -0.335 6.335 19 C 0.018 3.982 20 C -0.189 4.189 21 C -0.115 4.115 22 C 0.079 3.921 23 O -0.500 6.500 24 H 0.115 0.885 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.049 0.951 28 H 0.076 0.924 29 H -0.003 1.003 30 H 0.024 0.976 31 H 0.265 0.735 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.132 0.868 35 H 0.118 0.882 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.158 0.842 39 H 0.148 0.852 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.295 -11.087 -14.669 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.208 4.208 3 C -0.034 4.034 4 N -0.245 5.245 5 C 0.050 3.950 6 C -0.542 4.542 7 H 0.048 0.952 8 C -0.189 4.189 9 N -0.593 5.593 10 Si 0.769 3.231 11 H -0.190 1.190 12 H -0.209 1.209 13 H -0.174 1.174 14 C -0.031 4.031 15 C -0.070 4.070 16 C -0.159 4.159 17 C 0.062 3.938 18 O -0.249 6.249 19 C -0.077 4.077 20 C -0.207 4.207 21 C -0.133 4.133 22 C 0.034 3.966 23 O -0.311 6.311 24 H 0.133 0.867 25 H 0.100 0.900 26 H 0.137 0.863 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.015 0.985 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.150 0.850 35 H 0.136 0.864 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.175 0.825 39 H 0.166 0.834 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 14.879 -10.309 -14.802 23.383 hybrid contribution -0.303 -0.788 0.971 1.287 sum 14.576 -11.097 -13.831 22.954 Atomic orbital electron populations 1.23914 0.96072 1.01909 0.99839 1.23563 0.96922 0.99490 1.00849 1.21124 0.93917 0.94461 0.93884 1.62055 1.13401 1.46803 1.02199 1.19904 0.92432 0.94824 0.87844 1.21194 1.29674 1.01460 1.01837 0.95205 1.25804 0.94690 0.98245 1.00199 1.70063 1.35593 1.28789 1.24885 0.85737 0.77964 0.80334 0.79040 1.19046 1.20931 1.17374 1.20925 0.92363 0.93054 0.96801 1.19934 0.96756 0.95413 0.94878 1.20258 1.01262 1.03522 0.90874 1.19007 0.95460 0.93676 0.85619 1.86064 1.57659 1.62258 1.18944 1.23347 0.92823 1.01630 0.89852 1.21331 1.01090 0.99325 0.98992 1.21452 0.99274 1.00068 0.92554 1.18400 0.96609 0.94390 0.87187 1.85010 1.64312 1.57174 1.24589 0.86726 0.89961 0.86337 0.93196 0.90623 0.98546 0.95758 0.92632 0.90237 0.93184 0.84995 0.86419 0.91955 0.91321 0.82477 0.83410 0.74616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.08 14.32 67.78 0.97 -5.11 16 2 C -0.19 -6.58 7.43 25.65 0.19 -6.39 16 3 C 0.09 3.80 5.52 85.56 0.47 4.27 16 4 N -0.52 -22.44 4.61 -909.96 -4.20 -26.64 16 5 C 0.18 8.66 3.65 85.56 0.31 8.98 16 6 C -0.50 -30.08 9.23 25.60 0.24 -29.84 16 7 H 0.03 2.02 7.56 -2.91 -0.02 2.00 16 8 C 0.01 0.42 5.47 84.65 0.46 0.88 16 9 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 10 Si 0.95 45.03 27.37 68.60 1.88 46.91 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 13 H -0.25 -11.07 6.68 99.48 0.67 -10.40 16 14 C 0.10 3.25 4.61 85.56 0.39 3.65 16 15 C -0.07 -2.09 4.69 -19.78 -0.09 -2.19 16 16 C -0.14 -3.85 8.86 22.35 0.20 -3.65 16 17 C 0.11 2.63 6.69 22.49 0.15 2.78 16 18 O -0.34 -7.34 10.50 -93.34 -0.98 -8.32 16 19 C 0.02 0.22 9.81 113.37 1.11 1.33 16 20 C -0.19 -3.99 9.03 22.35 0.20 -3.79 16 21 C -0.12 -2.74 9.98 22.35 0.22 -2.51 16 22 C 0.08 2.34 6.68 22.49 0.15 2.49 16 23 O -0.50 -15.53 12.79 -93.28 -1.19 -16.72 16 24 H 0.11 3.20 8.06 -2.91 -0.02 3.18 16 25 H 0.08 3.06 7.84 -2.91 -0.02 3.04 16 26 H 0.12 3.60 6.70 -2.91 -0.02 3.58 16 27 H 0.05 2.36 6.83 -2.39 -0.02 2.34 16 28 H 0.08 2.84 6.75 -2.39 -0.02 2.82 16 29 H 0.00 -0.15 6.09 -2.39 -0.01 -0.16 16 30 H 0.02 1.17 6.91 -2.39 -0.02 1.16 16 31 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 32 H 0.08 2.62 7.55 -2.39 -0.02 2.60 16 33 H 0.05 1.55 6.02 -2.39 -0.01 1.53 16 34 H 0.13 3.46 8.01 -2.91 -0.02 3.43 16 35 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 0.68 7.66 -2.38 -0.02 0.66 16 37 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 38 H 0.16 2.26 6.29 -2.91 -0.02 2.25 16 39 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.40 8.08 9.06 -74.06 -0.67 7.41 16 Total: -1.00 -74.92 329.60 1.12 -73.80 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: 0.33 Total: 20.94 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 4.98 Total: -29.11 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -3.90 Total: -87.49 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -2.17 Total: -25.04 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -74.92 1.12 -73.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292718663.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.107 kcal (2) G-P(sol) polarization free energy of solvation -74.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds