Wall clock time and date at job start Mon Mar 30 2020 02:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00121 * 2 1 4 4 N 1.46898 * 109.47184 * 124.15957 * 3 2 1 5 5 C 1.46899 * 111.00243 * 301.53729 * 4 3 2 6 6 C 1.50695 * 109.47117 * 288.99155 * 5 4 3 7 7 H 1.08004 * 120.00370 * 354.86723 * 6 5 4 8 8 C 1.37876 * 119.99933 * 174.86897 * 6 5 4 9 9 N 1.31509 * 120.00334 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99945 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47259 * 59.99998 * 10 8 6 12 12 H 1.48503 * 109.47422 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47219 * 299.99833 * 10 8 6 14 14 C 1.46907 * 111.00229 * 65.49320 * 4 3 2 15 15 C 1.50697 * 109.47126 * 66.04239 * 14 4 3 16 16 C 1.38278 * 120.00416 * 260.23493 * 15 14 4 17 17 C 1.38214 * 120.14857 * 180.27952 * 16 15 14 18 18 C 1.38289 * 120.14193 * 359.76466 * 17 16 15 19 19 C 1.38521 * 120.00029 * 359.97438 * 18 17 16 20 20 O 1.35996 * 120.06729 * 180.02562 * 19 18 17 21 21 C 1.42894 * 117.00357 * 359.97438 * 20 19 18 22 22 C 1.38529 * 119.99619 * 80.00126 * 15 14 4 23 23 O 1.35990 * 120.07351 * 359.97438 * 22 15 14 24 24 H 1.08006 * 120.00205 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99929 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.00009 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47355 * 4.16080 * 3 2 1 28 28 H 1.09002 * 109.47384 * 244.15671 * 3 2 1 29 29 H 1.09007 * 109.46782 * 48.98862 * 5 4 3 30 30 H 1.08998 * 109.47408 * 168.98568 * 5 4 3 31 31 H 0.97005 * 120.00308 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.46570 * 306.04676 * 14 4 3 33 33 H 1.09000 * 109.47252 * 186.05147 * 14 4 3 34 34 H 1.08000 * 119.93104 * 0.02793 * 16 15 14 35 35 H 1.07998 * 119.92764 * 179.74451 * 17 16 15 36 36 H 1.08003 * 119.99478 * 180.02562 * 18 17 16 37 37 H 1.09005 * 109.47055 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.46898 * 299.99382 * 21 20 19 39 39 H 1.08996 * 109.47424 * 59.99822 * 21 20 19 40 40 H 0.96698 * 113.99865 * 269.72081 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9818 1.3403 1.1460 5 6 2.2514 1.1837 2.4109 6 6 1.4544 2.4322 2.6887 7 1 1.5509 3.2900 2.0397 8 6 0.6021 2.4793 3.7713 9 7 0.4841 1.4346 4.5614 10 14 -0.3853 4.0271 4.1160 11 1 -1.2630 4.3231 2.9553 12 1 -1.2197 3.8226 5.3274 13 1 0.5412 5.1659 4.3391 14 6 4.0292 0.3188 1.0130 15 6 4.9103 0.6531 -0.1629 16 6 4.7220 0.0106 -1.3728 17 6 5.5322 0.3107 -2.4517 18 6 6.5316 1.2584 -2.3272 19 6 6.7221 1.9095 -1.1195 20 8 7.7042 2.8421 -0.9957 21 6 8.5030 3.1004 -2.1520 22 6 5.9059 1.6076 -0.0332 23 8 6.0890 2.2441 1.1545 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3575 2.1322 0.0746 28 1 2.6331 1.3958 -0.9249 29 1 1.5767 0.3307 2.3377 30 1 2.9605 1.0174 3.2218 31 1 -0.1153 1.4679 5.3234 32 1 3.5679 -0.6562 0.8558 33 1 4.6302 0.2941 1.9220 34 1 3.9427 -0.7303 -1.4739 35 1 5.3846 -0.1962 -3.3938 36 1 7.1630 1.4913 -3.1719 37 1 9.2460 3.8627 -1.9174 38 1 9.0068 2.1835 -2.4578 39 1 7.8654 3.4525 -2.9629 40 1 5.5757 3.0583 1.2476 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292882693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:42 Heat of formation + Delta-G solvation = -25.165336 kcal Electronic energy + Delta-G solvation = -21755.686664 eV Core-core repulsion = 18536.977071 eV Total energy + Delta-G solvation = -3218.709593 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33049 -38.23214 -36.81458 -36.10201 -32.77454 -32.42388 -30.52993 -29.57069 -27.43266 -27.01190 -25.99071 -23.78461 -22.25380 -21.26598 -20.74811 -18.89804 -18.00731 -17.27907 -16.43220 -16.15422 -15.89525 -15.27889 -15.00775 -14.70011 -14.27208 -14.08881 -13.96136 -13.67422 -13.58273 -12.68007 -12.29436 -12.13320 -12.04616 -11.76642 -11.48607 -11.22669 -11.10885 -10.92906 -10.82971 -10.69757 -10.57828 -10.41371 -10.18782 -9.88375 -9.23871 -8.72704 -8.46462 -8.36785 -7.98139 -7.23547 -5.97731 -3.98617 1.37459 1.50565 2.92309 3.25925 3.35311 3.39768 3.42286 3.74178 4.46164 4.54570 4.81746 4.97744 5.02969 5.03933 5.25086 5.30974 5.37784 5.38726 5.48956 5.50909 5.57701 5.76598 5.95321 6.07969 6.12919 6.27180 6.36624 6.44015 6.50032 6.65515 6.72449 6.84699 7.18703 7.29549 7.34052 7.37274 7.47445 7.84183 8.12080 8.14637 8.21968 8.57038 9.08463 9.64946 11.12775 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020714 B = 0.004878 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.409550 B = 5739.051953 C = 6533.619433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.179 4.179 3 C 0.088 3.912 4 N -0.522 5.522 5 C 0.191 3.809 6 C -0.502 4.502 7 H 0.060 0.940 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.894 3.106 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.090 3.910 15 C -0.052 4.052 16 C -0.137 4.137 17 C -0.095 4.095 18 C -0.204 4.204 19 C 0.093 3.907 20 O -0.309 6.309 21 C 0.028 3.972 22 C 0.102 3.898 23 O -0.482 6.482 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.006 0.994 30 H 0.024 0.976 31 H 0.261 0.739 32 H 0.037 0.963 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.661 -1.249 -14.995 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.199 4.199 3 C -0.040 4.040 4 N -0.245 5.245 5 C 0.066 3.934 6 C -0.540 4.540 7 H 0.079 0.921 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.202 1.202 14 C -0.038 4.038 15 C -0.053 4.053 16 C -0.156 4.156 17 C -0.114 4.114 18 C -0.223 4.223 19 C 0.048 3.952 20 O -0.222 6.222 21 C -0.068 4.068 22 C 0.056 3.944 23 O -0.292 6.292 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.024 0.976 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 11.245 -1.173 -14.493 18.381 hybrid contribution -1.284 0.243 -0.090 1.310 sum 9.961 -0.930 -14.582 17.684 Atomic orbital electron populations 1.23681 0.96050 1.01074 1.00783 1.23496 0.96660 0.99705 1.00022 1.21273 0.94654 0.94361 0.93738 1.62442 1.12787 1.45036 1.04218 1.19782 0.92320 0.97058 0.84210 1.21053 1.22914 0.99320 1.10744 0.92142 1.24943 0.97015 0.96229 0.96214 1.69945 1.38205 1.29297 1.16328 0.86624 0.80020 0.83611 0.77492 1.20402 1.21463 1.20234 1.20978 0.93285 0.94146 0.95405 1.20161 0.94076 0.95297 0.95764 1.20925 1.00637 1.01756 0.92243 1.20832 0.94806 0.97096 0.98628 1.21031 1.02935 1.01745 0.96615 1.19492 0.90913 0.91056 0.93743 1.86158 1.43640 1.55417 1.37001 1.23019 0.94462 1.01298 0.88002 1.17522 0.95205 0.97089 0.84600 1.84748 1.69857 1.42415 1.32211 0.89759 0.88525 0.88755 0.89957 0.91974 0.97608 0.95767 0.92985 0.94482 0.89750 0.85854 0.85983 0.85672 0.88474 0.92946 0.92897 0.74856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 14.32 29.02 0.42 -2.73 16 2 C -0.18 -3.22 7.39 -36.03 -0.27 -3.48 16 3 C 0.09 1.66 5.43 -4.98 -0.03 1.63 16 4 N -0.52 -10.81 4.65 -238.96 -1.11 -11.92 16 5 C 0.19 4.84 4.57 -4.98 -0.02 4.82 16 6 C -0.50 -13.76 8.52 -34.44 -0.29 -14.06 16 7 H 0.06 1.65 7.61 -52.48 -0.40 1.25 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 10 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.09 1.64 4.60 -4.97 -0.02 1.62 16 15 C -0.05 -0.84 4.60 -104.50 -0.48 -1.32 16 16 C -0.14 -1.89 8.56 -39.58 -0.34 -2.22 16 17 C -0.10 -1.14 10.04 -39.57 -0.40 -1.54 16 18 C -0.20 -2.51 9.04 -39.46 -0.36 -2.86 16 19 C 0.09 1.37 6.70 -39.12 -0.26 1.11 16 20 O -0.31 -4.30 10.28 -34.20 -0.35 -4.65 16 21 C 0.03 0.24 9.81 101.05 0.99 1.24 16 22 C 0.10 1.69 6.69 -39.12 -0.26 1.43 16 23 O -0.48 -8.37 12.52 -34.18 -0.43 -8.79 16 24 H 0.08 1.34 8.06 -52.48 -0.42 0.92 16 25 H 0.10 1.76 7.84 -52.48 -0.41 1.35 16 26 H 0.09 1.59 6.84 -52.48 -0.36 1.23 16 27 H 0.08 1.70 7.01 -51.93 -0.36 1.34 16 28 H 0.06 1.07 6.32 -51.93 -0.33 0.74 16 29 H 0.01 0.17 6.68 -51.93 -0.35 -0.18 16 30 H 0.02 0.67 7.83 -51.93 -0.41 0.26 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.04 0.65 6.27 -51.93 -0.33 0.33 16 33 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 34 H 0.12 1.55 8.04 -52.49 -0.42 1.13 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.19 6.30 -52.48 -0.33 0.86 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 39 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 40 H 0.39 6.04 9.06 45.56 0.41 6.46 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -31.05 332.61 -7.46 -38.51 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -4.87 Total: 5.96 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -1.42 Total: -14.87 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.38 Total: -37.71 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.78 Total: -13.44 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.05 -7.46 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292882693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.342 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds