Wall clock time and date at job start Mon Mar 30 2020 02:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50697 * 120.00121 * 2 1 4 4 N 1.46898 * 109.47184 * 124.15957 * 3 2 1 5 5 C 1.46899 * 111.00243 * 301.53729 * 4 3 2 6 6 C 1.50695 * 109.47117 * 288.99155 * 5 4 3 7 7 H 1.08004 * 120.00370 * 354.86723 * 6 5 4 8 8 C 1.37876 * 119.99933 * 174.86897 * 6 5 4 9 9 N 1.31509 * 120.00334 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99945 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47259 * 59.99998 * 10 8 6 12 12 H 1.48503 * 109.47422 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47219 * 299.99833 * 10 8 6 14 14 C 1.46907 * 111.00229 * 65.49320 * 4 3 2 15 15 C 1.50697 * 109.47126 * 66.04239 * 14 4 3 16 16 C 1.38278 * 120.00416 * 260.23493 * 15 14 4 17 17 C 1.38214 * 120.14857 * 180.27952 * 16 15 14 18 18 C 1.38289 * 120.14193 * 359.76466 * 17 16 15 19 19 C 1.38521 * 120.00029 * 359.97438 * 18 17 16 20 20 O 1.35996 * 120.06729 * 180.02562 * 19 18 17 21 21 C 1.42894 * 117.00357 * 359.97438 * 20 19 18 22 22 C 1.38529 * 119.99619 * 80.00126 * 15 14 4 23 23 O 1.35990 * 120.07351 * 359.97438 * 22 15 14 24 24 H 1.08006 * 120.00205 * 179.97438 * 1 2 3 25 25 H 1.08005 * 119.99929 * 0.02562 * 1 2 3 26 26 H 1.08004 * 120.00009 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47355 * 4.16080 * 3 2 1 28 28 H 1.09002 * 109.47384 * 244.15671 * 3 2 1 29 29 H 1.09007 * 109.46782 * 48.98862 * 5 4 3 30 30 H 1.08998 * 109.47408 * 168.98568 * 5 4 3 31 31 H 0.97005 * 120.00308 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.46570 * 306.04676 * 14 4 3 33 33 H 1.09000 * 109.47252 * 186.05147 * 14 4 3 34 34 H 1.08000 * 119.93104 * 0.02793 * 16 15 14 35 35 H 1.07998 * 119.92764 * 179.74451 * 17 16 15 36 36 H 1.08003 * 119.99478 * 180.02562 * 18 17 16 37 37 H 1.09005 * 109.47055 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.46898 * 299.99382 * 21 20 19 39 39 H 1.08996 * 109.47424 * 59.99822 * 21 20 19 40 40 H 0.96698 * 113.99865 * 269.72081 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9818 1.3403 1.1460 5 6 2.2514 1.1837 2.4109 6 6 1.4544 2.4322 2.6887 7 1 1.5509 3.2900 2.0397 8 6 0.6021 2.4793 3.7713 9 7 0.4841 1.4346 4.5614 10 14 -0.3853 4.0271 4.1160 11 1 -1.2630 4.3231 2.9553 12 1 -1.2197 3.8226 5.3274 13 1 0.5412 5.1659 4.3391 14 6 4.0292 0.3188 1.0130 15 6 4.9103 0.6531 -0.1629 16 6 4.7220 0.0106 -1.3728 17 6 5.5322 0.3107 -2.4517 18 6 6.5316 1.2584 -2.3272 19 6 6.7221 1.9095 -1.1195 20 8 7.7042 2.8421 -0.9957 21 6 8.5030 3.1004 -2.1520 22 6 5.9059 1.6076 -0.0332 23 8 6.0890 2.2441 1.1545 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3575 2.1322 0.0746 28 1 2.6331 1.3958 -0.9249 29 1 1.5767 0.3307 2.3377 30 1 2.9605 1.0174 3.2218 31 1 -0.1153 1.4679 5.3234 32 1 3.5679 -0.6562 0.8558 33 1 4.6302 0.2941 1.9220 34 1 3.9427 -0.7303 -1.4739 35 1 5.3846 -0.1962 -3.3938 36 1 7.1630 1.4913 -3.1719 37 1 9.2460 3.8627 -1.9174 38 1 9.0068 2.1835 -2.4578 39 1 7.8654 3.4525 -2.9629 40 1 5.5757 3.0583 1.2476 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292882693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:42 Heat of formation + Delta-G solvation = -46.462991 kcal Electronic energy + Delta-G solvation = -21756.610199 eV Core-core repulsion = 18536.977071 eV Total energy + Delta-G solvation = -3219.633128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.41339 -39.48804 -38.21756 -37.27230 -34.80719 -33.89986 -31.93875 -30.58077 -29.03095 -28.20000 -27.34902 -25.53951 -23.37326 -22.80171 -22.11455 -20.34485 -19.20872 -18.42205 -18.19904 -17.54002 -17.02087 -16.73037 -16.21556 -16.17561 -15.96483 -15.44813 -15.14379 -14.94173 -14.88622 -14.17030 -13.97852 -13.32881 -13.13081 -13.07950 -12.98231 -12.85121 -12.58505 -12.48284 -12.23324 -12.17278 -12.05250 -11.89659 -11.85881 -11.43849 -11.18168 -10.55852 -10.16575 -9.61453 -9.04503 -8.93065 -8.13717 -6.22636 0.28265 0.44273 1.42350 1.44789 1.48487 1.52411 2.37084 2.43121 2.66590 3.19059 3.42140 3.53373 3.85959 4.02105 4.10433 4.18170 4.30583 4.40326 4.42616 4.42914 4.46546 4.55853 4.73312 4.76035 4.83301 4.98160 5.00723 5.12203 5.26719 5.27767 5.37913 5.45803 5.59894 5.68818 5.75299 5.80060 5.93741 6.13728 6.37984 6.41284 6.64619 6.92952 6.94466 7.46121 8.96367 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020714 B = 0.004878 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.409550 B = 5739.051953 C = 6533.619433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.186 4.186 3 C 0.093 3.907 4 N -0.525 5.525 5 C 0.209 3.791 6 C -0.512 4.512 7 H 0.059 0.941 8 C 0.006 3.994 9 N -0.934 5.934 10 Si 0.961 3.039 11 H -0.268 1.268 12 H -0.286 1.286 13 H -0.271 1.271 14 C 0.098 3.902 15 C -0.068 4.068 16 C -0.141 4.141 17 C -0.083 4.083 18 C -0.195 4.195 19 C 0.086 3.914 20 O -0.335 6.335 21 C 0.017 3.983 22 C 0.069 3.931 23 O -0.501 6.501 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.108 0.892 27 H 0.061 0.939 28 H 0.084 0.916 29 H -0.016 1.016 30 H -0.009 1.009 31 H 0.262 0.738 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.136 0.864 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.077 -1.025 -17.802 20.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.206 4.206 3 C -0.034 4.034 4 N -0.247 5.247 5 C 0.083 3.917 6 C -0.551 4.551 7 H 0.077 0.923 8 C -0.192 4.192 9 N -0.574 5.574 10 Si 0.786 3.214 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.196 1.196 14 C -0.030 4.030 15 C -0.069 4.069 16 C -0.159 4.159 17 C -0.101 4.101 18 C -0.213 4.213 19 C 0.040 3.960 20 O -0.249 6.249 21 C -0.077 4.077 22 C 0.023 3.977 23 O -0.311 6.311 24 H 0.123 0.877 25 H 0.106 0.894 26 H 0.126 0.874 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.002 0.998 30 H 0.009 0.991 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.154 0.846 35 H 0.178 0.822 36 H 0.177 0.823 37 H 0.132 0.868 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 11.680 -0.946 -17.332 20.921 hybrid contribution -1.302 0.164 0.686 1.481 sum 10.378 -0.781 -16.645 19.631 Atomic orbital electron populations 1.23834 0.96129 1.01673 1.00143 1.23516 0.96863 0.99638 1.00546 1.21204 0.94270 0.94306 0.93642 1.62293 1.13008 1.46438 1.02981 1.19373 0.91115 0.95544 0.85640 1.21335 1.23098 0.99856 1.10768 0.92298 1.25784 0.98108 0.99342 0.95940 1.70076 1.39062 1.31419 1.16877 0.85564 0.78565 0.79686 0.77554 1.19299 1.21131 1.19601 1.20831 0.92534 0.93721 0.95866 1.19970 0.94371 0.96756 0.95847 1.21109 1.01398 1.01709 0.91717 1.21255 0.93335 0.96208 0.99322 1.21442 1.02870 1.00545 0.96477 1.19587 0.90900 0.91571 0.93950 1.86125 1.43840 1.55224 1.39673 1.23358 0.94590 1.02684 0.87052 1.17838 0.96760 0.98007 0.85054 1.84725 1.70138 1.42717 1.33549 0.87732 0.89435 0.87394 0.92061 0.89771 0.99848 0.99074 0.92938 0.93886 0.92206 0.84596 0.82159 0.82307 0.86771 0.91453 0.91401 0.74826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.25 14.32 67.79 0.97 -5.28 16 2 C -0.19 -6.59 7.39 25.65 0.19 -6.40 16 3 C 0.09 3.54 5.43 85.56 0.46 4.00 16 4 N -0.52 -22.42 4.65 -909.94 -4.24 -26.65 16 5 C 0.21 11.09 4.57 85.56 0.39 11.48 16 6 C -0.51 -28.84 8.52 25.60 0.22 -28.62 16 7 H 0.06 3.27 7.61 -2.91 -0.02 3.25 16 8 C 0.01 0.35 5.46 84.66 0.46 0.81 16 9 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 10 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 14 C 0.10 3.70 4.60 85.55 0.39 4.09 16 15 C -0.07 -2.19 4.60 -19.79 -0.09 -2.28 16 16 C -0.14 -3.55 8.56 22.27 0.19 -3.36 16 17 C -0.08 -1.67 10.04 22.28 0.22 -1.44 16 18 C -0.19 -4.08 9.04 22.35 0.20 -3.88 16 19 C 0.09 2.40 6.70 22.57 0.15 2.55 16 20 O -0.33 -8.90 10.28 -79.66 -0.82 -9.72 16 21 C 0.02 0.26 9.81 113.37 1.11 1.37 16 22 C 0.07 2.31 6.69 22.57 0.15 2.46 16 23 O -0.50 -18.33 12.52 -79.59 -1.00 -19.32 16 24 H 0.10 3.17 8.06 -2.91 -0.02 3.15 16 25 H 0.09 3.18 7.84 -2.91 -0.02 3.16 16 26 H 0.11 3.52 6.84 -2.91 -0.02 3.50 16 27 H 0.06 2.56 7.01 -2.39 -0.02 2.55 16 28 H 0.08 2.80 6.32 -2.39 -0.02 2.79 16 29 H -0.02 -0.92 6.68 -2.38 -0.02 -0.94 16 30 H -0.01 -0.52 7.83 -2.39 -0.02 -0.54 16 31 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 32 H 0.04 1.54 6.27 -2.39 -0.01 1.53 16 33 H 0.06 2.50 7.58 -2.39 -0.02 2.48 16 34 H 0.14 3.05 8.04 -2.91 -0.02 3.02 16 35 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 36 H 0.16 2.21 6.30 -2.91 -0.02 2.19 16 37 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.07 0.80 7.66 -2.39 -0.02 0.79 16 39 H 0.07 0.81 7.66 -2.39 -0.02 0.79 16 40 H 0.40 13.08 9.06 -74.06 -0.67 12.41 16 Total: -1.00 -68.82 332.61 1.66 -67.16 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.37 Total: 22.56 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 5.03 Total: -24.49 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -3.95 Total: -82.79 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -1.82 Total: -29.04 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -68.82 1.66 -67.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292882693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.693 kcal (2) G-P(sol) polarization free energy of solvation -68.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds