Wall clock time and date at job start Mon Mar 30 2020 02:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00145 * 2 1 4 4 C 1.53004 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.47218 * 179.97438 * 4 3 2 6 6 C 1.38133 * 120.03179 * 265.00376 * 5 4 3 7 7 C 1.38262 * 120.06469 * 179.97438 * 6 5 4 8 8 C 1.38303 * 120.14508 * 0.04391 * 7 6 5 9 9 C 1.38088 * 120.06665 * 359.97438 * 8 7 6 10 10 C 1.38847 * 120.03302 * 84.72229 * 5 4 3 11 11 N 1.39922 * 120.07379 * 0.02562 * 10 5 4 12 12 C 1.34771 * 120.00116 * 145.02548 * 11 10 5 13 13 O 1.21290 * 120.00176 * 4.49058 * 12 11 10 14 14 C 1.50703 * 120.00128 * 184.48784 * 12 11 10 15 15 C 1.52999 * 109.47062 * 180.02562 * 14 12 11 16 16 C 1.50705 * 109.47005 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00190 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99782 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00144 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99730 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46943 * 59.99906 * 20 18 16 22 22 H 1.48496 * 109.46919 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47223 * 300.00275 * 20 18 16 24 24 H 1.09004 * 109.46764 * 60.00173 * 1 2 3 25 25 H 1.09003 * 109.47534 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47221 * 300.00281 * 1 2 3 27 27 H 1.08995 * 109.47391 * 59.99833 * 3 2 1 28 28 H 1.09003 * 109.46904 * 299.99920 * 3 2 1 29 29 H 1.09005 * 109.46987 * 59.99735 * 4 3 2 30 30 H 1.09003 * 109.46813 * 300.00115 * 4 3 2 31 31 H 1.07996 * 119.96969 * 359.97200 * 6 5 4 32 32 H 1.08005 * 119.92773 * 180.02562 * 7 6 5 33 33 H 1.07995 * 119.96484 * 179.97438 * 8 7 6 34 34 H 1.08007 * 120.02917 * 180.02562 * 9 8 7 35 35 H 0.96997 * 119.99713 * 325.02874 * 11 10 5 36 36 H 1.08994 * 109.47216 * 300.00173 * 14 12 11 37 37 H 1.09002 * 109.46851 * 60.00856 * 14 12 11 38 38 H 1.09005 * 109.47465 * 299.99845 * 15 14 12 39 39 H 1.08999 * 109.47501 * 60.00282 * 15 14 12 40 40 H 0.97004 * 120.00303 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1485 2.5613 0.0000 6 6 4.5253 3.1497 -1.1916 7 6 5.0873 4.4130 -1.1930 8 6 5.2749 5.0910 -0.0023 9 6 4.9006 4.5080 1.1923 10 6 4.3297 3.2418 1.1966 11 7 3.9442 2.6507 2.4048 12 6 4.6640 2.8710 3.5227 13 8 5.5974 3.6452 3.5003 14 6 4.3092 2.1553 4.8006 15 6 5.2745 2.5813 5.9086 16 6 4.9201 1.8651 7.1864 17 1 4.0892 1.1755 7.2063 18 6 5.6566 2.0904 8.3300 19 7 6.6680 2.9306 8.3059 20 14 5.2169 1.2033 9.9139 21 1 5.3189 -0.2634 9.7045 22 1 6.1538 1.6167 10.9893 23 1 3.8279 1.5517 10.3073 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.8575 0.6434 -0.8891 30 1 3.8567 0.6438 0.8909 31 1 4.3808 2.6225 -2.1230 32 1 5.3807 4.8711 -2.1260 33 1 5.7145 6.0774 -0.0067 34 1 5.0470 5.0383 2.1218 35 1 3.1588 2.0824 2.4377 36 1 3.2897 2.4110 5.0892 37 1 4.3843 1.0788 4.6470 38 1 6.2942 2.3259 5.6202 39 1 5.1991 3.6578 6.0621 40 1 7.1860 3.0894 9.1105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293477888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:56 Heat of formation + Delta-G solvation = -94.135344 kcal Electronic energy + Delta-G solvation = -20863.141518 eV Core-core repulsion = 17641.441162 eV Total energy + Delta-G solvation = -3221.700356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.71848 -39.76958 -38.69822 -35.93041 -35.59633 -34.24135 -33.13078 -30.81520 -29.82121 -27.73065 -27.08972 -24.63264 -24.38959 -23.02965 -21.87830 -21.17102 -18.92300 -18.56993 -17.63005 -17.54436 -16.99175 -16.70838 -16.52308 -16.39684 -15.89643 -15.71599 -15.28290 -14.73430 -14.41377 -14.23233 -14.10088 -13.95816 -13.76034 -13.28721 -12.80099 -12.77615 -12.66448 -12.52540 -12.27090 -12.13914 -12.01704 -11.94947 -11.67021 -11.37780 -11.31499 -10.73634 -10.60610 -10.56607 -9.73226 -9.09736 -8.18876 -6.33111 0.27441 0.42757 1.42026 1.46386 1.54126 1.59993 2.06785 2.43330 2.70489 2.95051 3.14338 3.81277 3.85216 3.96984 4.13358 4.20319 4.26434 4.39106 4.46149 4.48304 4.49220 4.55314 4.58149 4.59215 4.62605 4.89946 4.91071 4.98599 5.03862 5.16216 5.37721 5.45792 5.48225 5.58091 5.59571 5.62617 5.82941 6.09720 6.15590 6.22142 6.39910 6.84410 7.15556 7.37228 8.93559 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016616 B = 0.003943 C = 0.003254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.708691 B = 7099.337189 C = 8603.804825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.412 6.412 3 C 0.068 3.932 4 C -0.074 4.074 5 C -0.113 4.113 6 C -0.094 4.094 7 C -0.132 4.132 8 C -0.111 4.111 9 C -0.151 4.151 10 C 0.133 3.867 11 N -0.664 5.664 12 C 0.511 3.489 13 O -0.561 6.561 14 C -0.118 4.118 15 C 0.043 3.957 16 C -0.545 4.545 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.937 5.937 20 Si 0.974 3.026 21 H -0.263 1.263 22 H -0.288 1.288 23 H -0.262 1.262 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.136 0.864 34 H 0.108 0.892 35 H 0.421 0.579 36 H 0.109 0.891 37 H 0.107 0.893 38 H -0.017 1.017 39 H -0.015 1.015 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.731 -2.993 -22.475 26.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.332 6.332 3 C -0.009 4.009 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.112 4.112 7 C -0.150 4.150 8 C -0.129 4.129 9 C -0.171 4.171 10 C 0.039 3.961 11 N -0.311 5.311 12 C 0.301 3.699 13 O -0.438 6.438 14 C -0.157 4.157 15 C 0.005 3.995 16 C -0.583 4.583 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.577 5.577 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.213 1.213 23 H -0.187 1.187 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.088 0.912 31 H 0.175 0.825 32 H 0.172 0.828 33 H 0.154 0.846 34 H 0.126 0.874 35 H 0.260 0.740 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.002 0.998 39 H 0.003 0.997 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.841 -2.577 -22.310 25.389 hybrid contribution -0.145 0.079 1.302 1.312 sum -11.987 -2.497 -21.008 24.316 Atomic orbital electron populations 1.22934 0.79485 1.03852 1.00887 1.87838 1.21412 1.28339 1.95602 1.22516 0.92697 0.84543 1.01123 1.20367 0.93489 0.92623 1.04707 1.19640 1.03787 0.96202 0.91889 1.21248 0.97302 0.95344 0.97327 1.21459 0.99803 0.95308 0.98442 1.21305 0.99055 1.00752 0.91838 1.21326 1.01801 0.94550 0.99423 1.17912 1.00284 0.92255 0.85627 1.43579 1.30554 1.50374 1.06587 1.21606 0.81096 0.81271 0.85893 1.90661 1.30947 1.36843 1.85328 1.21677 1.02593 1.01256 0.90205 1.18689 0.93310 0.94971 0.92520 1.21667 1.15512 1.25880 0.95214 0.90551 1.26120 0.94693 0.96028 1.03438 1.70166 1.20584 1.36987 1.29961 0.85379 0.78351 0.79032 0.77519 1.18723 1.21339 1.18662 0.92925 0.88539 0.93447 0.93426 0.91628 0.88438 0.91177 0.82493 0.82802 0.84566 0.87443 0.73981 0.87288 0.87461 0.99835 0.99658 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.65 10.70 -148.98 -1.59 -9.25 16 3 C 0.07 1.11 5.85 71.98 0.42 1.53 16 4 C -0.07 -1.37 5.11 29.85 0.15 -1.22 16 5 C -0.11 -2.49 5.15 -19.74 -0.10 -2.59 16 6 C -0.09 -1.69 9.68 22.25 0.22 -1.47 16 7 C -0.13 -2.46 10.04 22.29 0.22 -2.23 16 8 C -0.11 -2.72 10.04 22.25 0.22 -2.50 16 9 C -0.15 -4.80 8.70 22.39 0.19 -4.61 16 10 C 0.13 3.87 6.29 38.15 0.24 4.11 16 11 N -0.66 -19.68 4.78 -303.51 -1.45 -21.13 16 12 C 0.51 20.19 7.68 87.66 0.67 20.86 16 13 O -0.56 -27.46 13.40 -3.06 -0.04 -27.50 16 14 C -0.12 -4.73 5.64 29.85 0.17 -4.56 16 15 C 0.04 2.38 4.26 29.85 0.13 2.51 16 16 C -0.54 -30.98 9.11 25.60 0.23 -30.75 16 17 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 18 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 19 N -0.94 -59.56 13.29 21.45 0.28 -59.27 16 20 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 0.77 7.25 -2.39 -0.02 0.76 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 1.54 8.05 -2.38 -0.02 1.52 16 30 H 0.07 1.47 7.45 -2.39 -0.02 1.45 16 31 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 32 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 33 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.11 4.14 6.20 -2.91 -0.02 4.13 16 35 H 0.42 9.60 7.03 -92.71 -0.65 8.95 16 36 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 37 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 38 H -0.02 -1.06 8.10 -2.38 -0.02 -1.08 16 39 H -0.02 -0.94 8.10 -2.39 -0.02 -0.96 16 40 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -77.11 338.29 4.09 -73.03 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.38 Total: 17.00 kcal Atomic # 6 Polarization: -23.67 SS G_CDS: 4.48 Total: -19.19 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -1.16 Total: -80.40 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -1.64 Total: -36.75 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -77.11 4.09 -73.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293477888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.110 kcal (2) G-P(sol) polarization free energy of solvation -77.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds